Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.54250 * 2 1 4 4 C 1.54227 * 110.60714 * 122.84805 * 2 1 3 5 5 C 1.51318 * 103.55846 * 118.51384 * 4 2 1 6 6 O 1.21227 * 125.39684 * 179.97438 * 5 4 2 7 7 N 1.33876 * 109.20449 * 0.02562 * 5 4 2 8 8 C 1.46504 * 122.76282 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.46916 * 90.02140 * 8 7 5 10 10 C 1.46849 * 111.00108 * 30.79231 * 9 8 7 11 11 C 1.53042 * 109.52370 * 185.83568 * 10 9 8 12 12 C 1.53112 * 109.27997 * 300.82222 * 11 10 9 13 13 C 1.53125 * 109.16048 * 57.65110 * 12 11 10 14 14 H 1.08998 * 109.53251 * 62.31256 * 13 12 11 15 15 C 1.50703 * 109.50152 * 182.40239 * 13 12 11 16 16 H 1.08000 * 119.99812 * 119.80518 * 15 13 12 17 17 C 1.37873 * 120.00280 * 299.80878 * 15 13 12 18 18 N 1.31517 * 120.00103 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99866 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47413 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47031 * 119.99972 * 19 17 15 22 22 H 1.48500 * 109.47021 * 239.99430 * 19 17 15 23 23 C 1.46843 * 110.99761 * 154.99991 * 9 8 7 24 24 C 1.34223 * 114.52616 * 0.08925 * 7 5 4 25 25 O 1.21231 * 125.58590 * 179.97438 * 24 7 5 26 26 H 1.09002 * 109.47153 * 59.29868 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.30059 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.30041 * 1 2 3 29 29 H 1.08998 * 109.47183 * 60.70507 * 3 2 1 30 30 H 1.09007 * 109.47093 * 180.70353 * 3 2 1 31 31 H 1.09002 * 109.46853 * 300.69663 * 3 2 1 32 32 H 1.09004 * 110.60924 * 237.03430 * 4 2 1 33 33 H 1.08997 * 110.60613 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.46774 * 210.01871 * 8 7 5 35 35 H 1.08997 * 109.46676 * 330.02563 * 8 7 5 36 36 H 1.09001 * 109.46152 * 305.85507 * 10 9 8 37 37 H 1.09001 * 109.46453 * 65.82054 * 10 9 8 38 38 H 1.08999 * 109.50166 * 180.87314 * 11 10 9 39 39 H 1.09006 * 109.49965 * 60.76327 * 11 10 9 40 40 H 1.09001 * 109.52174 * 297.74943 * 12 11 10 41 41 H 1.09001 * 109.57464 * 177.59004 * 12 11 10 42 42 H 0.96996 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46888 * 294.17388 * 23 9 8 44 44 H 1.08997 * 109.46316 * 54.14591 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0728 -0.7830 1.2128 5 6 2.8549 -1.9150 0.5830 6 8 3.4528 -2.7778 1.1893 7 7 2.7829 -1.8119 -0.7499 8 6 3.4381 -2.7595 -1.6549 9 7 2.5180 -3.8640 -1.9572 10 6 1.1222 -3.4082 -1.9314 11 6 0.1889 -4.6086 -2.1055 12 6 0.4956 -5.2983 -3.4376 13 6 1.9675 -5.7199 -3.4581 14 1 2.1512 -6.4411 -2.6617 15 6 2.2928 -6.3470 -4.7893 16 1 3.0525 -5.9104 -5.4207 17 6 1.6205 -7.4780 -5.2013 18 7 0.6956 -8.0100 -4.4323 19 14 2.0242 -8.2556 -6.8511 20 1 3.0938 -7.4717 -7.5194 21 1 2.4899 -9.6500 -6.6404 22 1 0.8095 -8.2633 -7.7052 23 6 2.8492 -4.4874 -3.2448 24 6 2.0632 -0.7678 -1.1898 25 8 1.8682 -0.4853 -2.3525 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 -1.0276 -0.0125 29 1 1.7235 1.9494 0.8962 30 1 3.1567 1.4123 -0.0126 31 1 1.7031 1.9570 -0.8837 32 1 2.7275 -0.1527 1.8147 33 1 1.2528 -1.1722 1.8163 34 1 3.7103 -2.2500 -2.5793 35 1 4.3359 -3.1543 -1.1795 36 1 0.9161 -2.9233 -0.9772 37 1 0.9567 -2.6989 -2.7423 38 1 -0.8465 -4.2680 -2.1019 39 1 0.3441 -5.3119 -1.2873 40 1 0.3032 -4.6073 -4.2584 41 1 -0.1372 -6.1791 -3.5470 42 1 0.2229 -8.8059 -4.7220 43 1 2.6756 -3.7731 -4.0496 44 1 3.8974 -4.7863 -3.2446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -61.351691 kcal Electronic energy + Delta-G solvation = -25234.039964 eV Core-core repulsion = 21765.486205 eV Total energy + Delta-G solvation = -3468.553759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30245 -38.67320 -38.17123 -36.30747 -35.30409 -33.21146 -31.56832 -29.89545 -28.81660 -27.84522 -26.14294 -24.95625 -24.13918 -22.26199 -21.75448 -20.79861 -19.29356 -18.60878 -17.25401 -16.98742 -16.33946 -16.23441 -15.40686 -14.92562 -14.56868 -14.47902 -14.30697 -14.08623 -13.86886 -13.63710 -13.51572 -13.15737 -12.79434 -12.62210 -12.46177 -12.24211 -12.07385 -11.95636 -11.77582 -11.62307 -11.46956 -10.95702 -10.72399 -10.70767 -10.43332 -10.25435 -10.02670 -9.90012 -9.80885 -9.47663 -9.08910 -8.71286 -8.30027 -7.75483 -5.96800 -4.02942 1.44142 2.40253 2.62530 3.31231 3.39197 3.43060 3.73766 3.96468 4.07858 4.30842 4.40838 4.53799 4.69495 5.08512 5.12085 5.21522 5.24217 5.31569 5.33482 5.34208 5.39259 5.47471 5.50907 5.61321 5.69870 5.80444 5.81008 6.02292 6.19628 6.34443 6.44836 6.66124 6.71803 6.77719 6.91937 7.18367 7.24998 7.32188 7.50305 7.66105 7.75664 7.78392 8.07229 8.16517 8.47165 9.00855 9.61396 11.09458 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.003920 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.230235 B = 7140.972107 C = 7253.177588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.152 4.152 5 C 0.530 3.470 6 O -0.471 6.471 7 N -0.575 5.575 8 C 0.268 3.732 9 N -0.544 5.544 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.069 3.931 24 C 0.533 3.467 25 O -0.471 6.471 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.092 0.908 42 H 0.259 0.741 43 H 0.025 0.975 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 18.534 11.847 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.192 4.192 5 C 0.318 3.682 6 O -0.341 6.341 7 N -0.318 5.318 8 C 0.058 3.942 9 N -0.271 5.271 10 C -0.068 4.068 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.054 0.946 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.057 4.057 24 C 0.321 3.679 25 O -0.340 6.340 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.389 17.696 11.881 21.318 hybrid contribution 0.126 0.043 -1.588 1.594 sum 0.516 17.739 10.293 20.516 Atomic orbital electron populations 1.21786 0.90257 1.03435 1.03715 1.21498 0.99036 0.97296 0.92435 1.21757 1.01217 0.92213 1.03749 1.22728 1.01972 0.96183 0.98325 1.20684 0.79892 0.85961 0.81685 1.90793 1.40845 1.36266 1.66188 1.47000 1.48099 1.27000 1.09743 1.22517 0.94215 0.85368 0.92147 1.62466 1.02453 1.26704 1.35496 1.22079 0.88610 0.97552 0.98553 1.21661 0.96041 0.96358 1.01224 1.21653 1.01247 0.99816 0.92079 1.18664 0.90139 0.90480 0.96972 0.94576 1.21159 1.20550 1.10497 1.03079 0.92705 1.24931 0.95046 0.96769 0.97071 1.69903 1.24439 1.21595 1.36738 0.86556 0.78194 0.79202 0.84145 1.19839 1.21024 1.21100 1.22372 1.00630 0.97553 0.85184 1.20827 0.76596 0.79941 0.90506 1.90775 1.55438 1.68641 1.19180 0.90865 0.90530 0.91620 0.90554 0.91975 0.90912 0.86192 0.86058 0.91889 0.87847 0.93506 0.94852 0.93505 0.92091 0.95062 0.88959 0.93097 0.95657 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.44 37.16 0.31 -0.68 16 2 C -0.10 -0.84 1.05 -154.72 -0.16 -1.00 16 3 C -0.13 -0.82 8.44 37.16 0.31 -0.51 16 4 C -0.15 -1.18 6.32 -26.94 -0.17 -1.35 16 5 C 0.53 6.83 7.78 -11.08 -0.09 6.74 16 6 O -0.47 -7.71 17.48 5.60 0.10 -7.61 16 7 N -0.57 -8.04 1.58 -118.52 -0.19 -8.23 16 8 C 0.27 4.37 6.04 -63.31 -0.38 3.99 16 9 N -0.54 -10.64 4.91 -238.57 -1.17 -11.81 16 10 C 0.06 1.14 4.24 -3.83 -0.02 1.12 16 11 C -0.11 -2.36 6.09 -26.65 -0.16 -2.52 16 12 C -0.11 -2.67 5.03 -26.61 -0.13 -2.81 16 13 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 14 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.57 11.36 55.43 0.63 -24.94 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.07 1.52 4.52 -3.84 -0.02 1.50 16 24 C 0.53 6.95 4.96 -10.93 -0.05 6.90 16 25 O -0.47 -7.65 16.44 5.60 0.09 -7.55 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.12 0.63 7.74 -51.93 -0.40 0.23 16 33 H 0.12 0.76 7.74 -51.93 -0.40 0.36 16 34 H 0.06 1.03 7.55 -51.93 -0.39 0.63 16 35 H 0.10 1.63 7.83 -51.93 -0.41 1.22 16 36 H 0.05 0.80 6.06 -51.93 -0.31 0.48 16 37 H 0.03 0.67 7.06 -51.93 -0.37 0.30 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 2.49 6.16 -51.93 -0.32 2.17 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -32.25 345.55 -8.72 -40.97 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.22 Total: -2.21 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.15 Total: -0.27 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.73 Total: -44.98 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.19 Total: -15.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.25 -8.72 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.377 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds