Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.54250 * 2 1 4 4 C 1.54227 * 110.60714 * 122.84805 * 2 1 3 5 5 C 1.51318 * 103.55846 * 118.51384 * 4 2 1 6 6 O 1.21227 * 125.39684 * 179.97438 * 5 4 2 7 7 N 1.33876 * 109.20449 * 0.02562 * 5 4 2 8 8 C 1.46504 * 122.76282 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.46916 * 90.02140 * 8 7 5 10 10 C 1.46849 * 111.00108 * 30.79231 * 9 8 7 11 11 C 1.53042 * 109.52370 * 185.83568 * 10 9 8 12 12 C 1.53112 * 109.27997 * 300.82222 * 11 10 9 13 13 C 1.53125 * 109.16048 * 57.65110 * 12 11 10 14 14 H 1.08998 * 109.53251 * 62.31256 * 13 12 11 15 15 C 1.50703 * 109.50152 * 182.40239 * 13 12 11 16 16 H 1.08000 * 119.99812 * 119.80518 * 15 13 12 17 17 C 1.37873 * 120.00280 * 299.80878 * 15 13 12 18 18 N 1.31517 * 120.00103 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99866 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47413 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47031 * 119.99972 * 19 17 15 22 22 H 1.48500 * 109.47021 * 239.99430 * 19 17 15 23 23 C 1.46843 * 110.99761 * 154.99991 * 9 8 7 24 24 C 1.34223 * 114.52616 * 0.08925 * 7 5 4 25 25 O 1.21231 * 125.58590 * 179.97438 * 24 7 5 26 26 H 1.09002 * 109.47153 * 59.29868 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.30059 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.30041 * 1 2 3 29 29 H 1.08998 * 109.47183 * 60.70507 * 3 2 1 30 30 H 1.09007 * 109.47093 * 180.70353 * 3 2 1 31 31 H 1.09002 * 109.46853 * 300.69663 * 3 2 1 32 32 H 1.09004 * 110.60924 * 237.03430 * 4 2 1 33 33 H 1.08997 * 110.60613 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.46774 * 210.01871 * 8 7 5 35 35 H 1.08997 * 109.46676 * 330.02563 * 8 7 5 36 36 H 1.09001 * 109.46152 * 305.85507 * 10 9 8 37 37 H 1.09001 * 109.46453 * 65.82054 * 10 9 8 38 38 H 1.08999 * 109.50166 * 180.87314 * 11 10 9 39 39 H 1.09006 * 109.49965 * 60.76327 * 11 10 9 40 40 H 1.09001 * 109.52174 * 297.74943 * 12 11 10 41 41 H 1.09001 * 109.57464 * 177.59004 * 12 11 10 42 42 H 0.96996 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46888 * 294.17388 * 23 9 8 44 44 H 1.08997 * 109.46316 * 54.14591 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0728 -0.7830 1.2128 5 6 2.8549 -1.9150 0.5830 6 8 3.4528 -2.7778 1.1893 7 7 2.7829 -1.8119 -0.7499 8 6 3.4381 -2.7595 -1.6549 9 7 2.5180 -3.8640 -1.9572 10 6 1.1222 -3.4082 -1.9314 11 6 0.1889 -4.6086 -2.1055 12 6 0.4956 -5.2983 -3.4376 13 6 1.9675 -5.7199 -3.4581 14 1 2.1512 -6.4411 -2.6617 15 6 2.2928 -6.3470 -4.7893 16 1 3.0525 -5.9104 -5.4207 17 6 1.6205 -7.4780 -5.2013 18 7 0.6956 -8.0100 -4.4323 19 14 2.0242 -8.2556 -6.8511 20 1 3.0938 -7.4717 -7.5194 21 1 2.4899 -9.6500 -6.6404 22 1 0.8095 -8.2633 -7.7052 23 6 2.8492 -4.4874 -3.2448 24 6 2.0632 -0.7678 -1.1898 25 8 1.8682 -0.4853 -2.3525 26 1 -0.3633 0.5247 -0.8836 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 -1.0276 -0.0125 29 1 1.7235 1.9494 0.8962 30 1 3.1567 1.4123 -0.0126 31 1 1.7031 1.9570 -0.8837 32 1 2.7275 -0.1527 1.8147 33 1 1.2528 -1.1722 1.8163 34 1 3.7103 -2.2500 -2.5793 35 1 4.3359 -3.1543 -1.1795 36 1 0.9161 -2.9233 -0.9772 37 1 0.9567 -2.6989 -2.7423 38 1 -0.8465 -4.2680 -2.1019 39 1 0.3441 -5.3119 -1.2873 40 1 0.3032 -4.6073 -4.2584 41 1 -0.1372 -6.1791 -3.5470 42 1 0.2229 -8.8059 -4.7220 43 1 2.6756 -3.7731 -4.0496 44 1 3.8974 -4.7863 -3.2446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -82.019844 kcal Electronic energy + Delta-G solvation = -25234.936202 eV Core-core repulsion = 21765.486205 eV Total energy + Delta-G solvation = -3469.449997 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.31324 -39.82360 -39.73962 -37.27149 -36.59266 -34.98210 -33.25719 -31.78649 -29.71030 -28.34678 -27.41354 -26.98705 -25.18515 -23.83371 -23.40307 -21.93672 -20.44919 -20.27507 -18.70596 -18.14067 -18.02142 -17.33660 -16.69959 -16.32821 -16.18572 -15.47366 -15.44996 -15.26462 -15.17269 -15.02233 -14.66394 -14.59250 -14.29826 -13.96884 -13.61641 -13.46780 -13.26367 -13.07714 -12.88874 -12.71446 -12.64673 -12.56846 -12.43760 -12.05647 -12.00423 -11.83816 -11.50058 -11.39301 -11.20070 -11.01144 -10.96605 -10.74394 -10.42949 -9.36514 -8.11436 -6.25766 0.44461 1.35697 1.39222 1.40831 1.52386 1.63010 2.40669 2.88665 2.98354 3.15972 3.16902 3.39196 3.80010 3.85493 3.94583 4.06320 4.09417 4.14313 4.22447 4.36109 4.44136 4.55218 4.59812 4.67572 4.72583 4.78432 4.80493 4.84974 4.90917 4.91769 5.02535 5.04141 5.23813 5.26224 5.31107 5.39568 5.58884 5.73874 5.80464 5.99163 6.01234 6.09043 6.27181 6.35986 6.69271 6.85215 7.42226 8.94059 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.003920 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.230235 B = 7140.972107 C = 7253.177588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.135 4.135 5 C 0.524 3.476 6 O -0.512 6.512 7 N -0.581 5.581 8 C 0.268 3.732 9 N -0.555 5.555 10 C 0.072 3.928 11 C -0.108 4.108 12 C -0.102 4.102 13 C 0.055 3.945 14 H 0.000 1.000 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.084 3.916 24 C 0.525 3.475 25 O -0.510 6.510 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.261 0.739 43 H 0.018 0.982 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 20.719 13.376 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.174 4.174 5 C 0.315 3.685 6 O -0.385 6.385 7 N -0.325 5.325 8 C 0.057 3.943 9 N -0.282 5.282 10 C -0.056 4.056 11 C -0.146 4.146 12 C -0.140 4.140 13 C 0.036 3.964 14 H 0.018 0.982 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.043 4.043 24 C 0.316 3.684 25 O -0.382 6.382 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.013 19.913 13.432 24.019 hybrid contribution 0.266 -0.634 -2.052 2.164 sum 0.252 19.278 11.380 22.388 Atomic orbital electron populations 1.21860 0.89125 1.03087 1.05152 1.21616 0.99680 0.97890 0.89859 1.21821 1.01255 0.90556 1.05073 1.22879 1.02372 0.94094 0.98006 1.21647 0.79294 0.86527 0.81036 1.90778 1.42744 1.38269 1.66667 1.47241 1.48247 1.26802 1.10191 1.22338 0.93843 0.85174 0.92962 1.62374 1.03398 1.28619 1.33792 1.21966 0.87942 0.96391 0.99339 1.21572 0.98041 0.96544 0.98415 1.21451 0.99902 0.98659 0.93996 1.18574 0.91736 0.91157 0.94955 0.98191 1.21496 1.20769 1.11226 1.04062 0.92924 1.25726 0.94829 0.97229 1.00603 1.70037 1.25100 1.21896 1.38378 0.85522 0.78146 0.78265 0.79801 1.19207 1.20471 1.20530 1.22029 0.99932 0.96065 0.86312 1.21826 0.75593 0.79590 0.91398 1.90754 1.56724 1.69473 1.21237 0.91824 0.86820 0.92794 0.87005 0.91938 0.91887 0.82625 0.83530 0.92084 0.87527 0.91106 0.95917 0.90980 0.92968 0.96050 0.91838 0.92956 0.96403 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.44 71.98 0.61 -0.90 16 2 C -0.09 -1.17 1.05 -52.32 -0.05 -1.22 16 3 C -0.13 -1.12 8.44 71.98 0.61 -0.51 16 4 C -0.13 -1.51 6.32 30.46 0.19 -1.32 16 5 C 0.52 12.47 7.78 87.99 0.68 13.15 16 6 O -0.51 -16.23 17.48 -2.87 -0.05 -16.28 16 7 N -0.58 -15.68 1.58 -766.52 -1.21 -16.89 16 8 C 0.27 8.82 6.04 170.81 1.03 9.85 16 9 N -0.55 -22.05 4.91 -908.71 -4.46 -26.51 16 10 C 0.07 2.70 4.24 86.33 0.37 3.06 16 11 C -0.11 -4.45 6.09 30.65 0.19 -4.27 16 12 C -0.10 -5.13 5.03 30.67 0.15 -4.98 16 13 C 0.05 2.91 2.26 -11.48 -0.03 2.88 16 14 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 15 C -0.54 -30.69 8.56 25.60 0.22 -30.47 16 16 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 17 C 0.02 0.85 5.30 84.65 0.45 1.30 16 18 N -0.91 -54.11 11.36 21.45 0.24 -53.86 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 C 0.08 3.80 4.52 86.33 0.39 4.19 16 24 C 0.53 12.99 4.96 87.94 0.44 13.42 16 25 O -0.51 -16.46 16.44 -2.88 -0.05 -16.50 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.16 0.75 7.74 -2.38 -0.02 0.74 16 33 H 0.15 1.05 7.74 -2.39 -0.02 1.03 16 34 H 0.06 2.03 7.55 -2.39 -0.02 2.02 16 35 H 0.11 3.41 7.83 -2.39 -0.02 3.39 16 36 H 0.07 2.33 6.06 -2.39 -0.01 2.31 16 37 H 0.02 0.91 7.06 -2.39 -0.02 0.90 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 3.56 6.16 -2.39 -0.01 3.54 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 2.92 8.12 -2.39 -0.02 2.90 16 Total: -1.00 -73.70 345.55 2.72 -70.98 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.97 Total: 8.21 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.24 Total: 4.21 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.43 Total: -97.27 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.10 Total: -32.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -73.70 2.72 -70.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.038 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds