Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46875 * 2 1 4 4 C 1.50704 * 110.54212 * 57.36240 * 3 2 1 5 5 O 1.21277 * 119.99669 * 242.10391 * 4 3 2 6 6 N 1.34775 * 120.00108 * 62.09514 * 4 3 2 7 7 C 1.46929 * 120.63043 * 3.83761 * 6 4 3 8 8 C 1.52759 * 109.00686 * 233.57986 * 7 6 4 9 9 C 1.53043 * 109.38569 * 305.58952 * 8 7 6 10 10 C 1.50690 * 109.45116 * 181.25464 * 9 8 7 11 11 H 1.08000 * 120.00082 * 239.93769 * 10 9 8 12 12 C 1.37881 * 120.00413 * 59.93889 * 10 9 8 13 13 N 1.31514 * 119.99300 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00356 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47084 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47413 * 119.99764 * 14 12 10 17 17 H 1.48501 * 109.47266 * 239.99770 * 14 12 10 18 18 C 1.53039 * 109.54047 * 61.23476 * 9 8 7 19 19 C 1.46926 * 120.63056 * 184.10941 * 6 4 3 20 20 C 1.54635 * 110.48256 * 179.97438 * 3 2 1 21 21 C 1.54482 * 101.76105 * 143.47588 * 20 3 2 22 22 N 1.46757 * 105.47629 * 334.58522 * 21 20 3 23 23 C 1.34421 * 111.30366 * 17.01343 * 22 21 20 24 24 O 1.21276 * 124.94645 * 179.55669 * 23 22 21 25 25 H 1.08996 * 109.46988 * 182.67351 * 1 2 3 26 26 H 1.09000 * 109.46801 * 302.67386 * 1 2 3 27 27 H 1.09003 * 109.47249 * 62.67098 * 1 2 3 28 28 H 1.08999 * 109.47110 * 239.99991 * 2 1 3 29 29 H 1.09000 * 109.47290 * 119.99626 * 2 1 3 30 30 H 1.08997 * 109.58554 * 353.41128 * 7 6 4 31 31 H 1.08999 * 109.59044 * 113.83881 * 7 6 4 32 32 H 1.08996 * 109.56417 * 185.55012 * 8 7 6 33 33 H 1.08999 * 109.36183 * 65.49868 * 8 7 6 34 34 H 1.09003 * 109.45414 * 301.22288 * 9 8 7 35 35 H 0.97011 * 119.99800 * 180.02562 * 13 12 10 36 36 H 1.08990 * 109.49944 * 178.68464 * 18 9 8 37 37 H 1.09008 * 109.52167 * 58.60525 * 18 9 8 38 38 H 1.08994 * 109.58711 * 246.16188 * 19 6 4 39 39 H 1.09001 * 109.58379 * 6.44623 * 19 6 4 40 40 H 1.08996 * 110.96893 * 261.59059 * 20 3 2 41 41 H 1.08995 * 110.96862 * 25.36074 * 20 3 2 42 42 H 1.08996 * 110.24249 * 215.58220 * 21 20 3 43 43 H 1.09002 * 110.31976 * 93.62337 * 21 20 3 44 44 H 0.97004 * 124.35060 * 196.99489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4987 2.1948 1.1884 5 8 0.7849 3.1608 1.0207 6 7 1.8076 1.7939 2.4375 7 6 2.7374 0.6776 2.6570 8 6 2.0684 -0.3570 3.5599 9 6 1.5887 0.3237 4.8440 10 6 0.9560 -0.7014 5.7492 11 1 -0.0764 -0.5944 6.0477 12 6 1.6950 -1.7761 6.1965 13 7 2.9520 -1.9067 5.8326 14 14 0.9104 -3.0472 7.3180 15 1 -0.5034 -2.6737 7.5767 16 1 0.9592 -4.3804 6.6657 17 1 1.6517 -3.0978 8.6038 18 6 0.5600 1.4026 4.4978 19 6 1.2163 2.4608 3.6055 20 6 3.5861 1.4699 0.0006 21 6 3.8798 2.6905 -0.8995 22 7 2.7067 2.8257 -1.7710 23 6 1.6571 2.1395 -1.2870 24 8 0.5623 2.0872 -1.8061 25 1 -0.3633 -1.0265 0.0479 26 1 -0.3633 0.5548 0.8651 27 1 -0.3634 0.4718 -0.9130 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9889 0.2182 1.7011 31 1 3.6439 1.0461 3.1373 32 1 2.7835 -1.1410 3.8090 33 1 1.2160 -0.7936 3.0394 34 1 2.4381 0.7814 5.3513 35 1 3.4719 -2.6630 6.1469 36 1 0.2016 1.8710 5.4143 37 1 -0.2786 0.9499 3.9686 38 1 1.9961 2.9777 4.1647 39 1 0.4662 3.1794 3.2751 40 1 3.9730 1.6258 1.0076 41 1 3.9925 0.5572 -0.4350 42 1 4.7744 2.5125 -1.4961 43 1 4.0041 3.5873 -0.2925 44 1 2.6908 3.3440 -2.5908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867312400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -69.383181 kcal Electronic energy + Delta-G solvation = -25779.789648 eV Core-core repulsion = 22310.887618 eV Total energy + Delta-G solvation = -3468.902031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45911 -38.99507 -36.79091 -36.39847 -34.57174 -33.38332 -31.20924 -30.27259 -29.88492 -27.54585 -26.23704 -23.62056 -22.95182 -22.54535 -21.96738 -21.03215 -19.39991 -18.26105 -17.43830 -16.80758 -16.41552 -15.96237 -15.43215 -14.80767 -14.64357 -14.56333 -14.07238 -13.65490 -13.48332 -13.31574 -13.31148 -13.09249 -12.74587 -12.70323 -12.33436 -12.20448 -11.78061 -11.64772 -11.52282 -11.17362 -10.98512 -10.95469 -10.78355 -10.62691 -10.41077 -10.14539 -9.70967 -9.59034 -9.35440 -9.22147 -9.17234 -8.91466 -8.42333 -8.07579 -6.07684 -4.13107 2.52314 2.82784 3.18617 3.24791 3.33723 3.38079 3.52603 4.10876 4.29143 4.38105 4.48033 4.77592 4.88643 5.10041 5.22286 5.26341 5.39101 5.50105 5.54974 5.65031 5.67470 5.77528 5.84841 5.91898 6.03034 6.10514 6.14746 6.24685 6.32212 6.40691 6.57993 6.62347 6.70355 6.84445 6.94661 6.99730 7.09069 7.21369 7.61779 7.82372 7.87221 7.98934 8.24815 8.36147 8.44668 8.90449 9.52374 10.97937 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.004489 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.351953 B = 6235.997984 C = 6287.632170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.114 4.114 4 C 0.538 3.462 5 O -0.546 6.546 6 N -0.593 5.593 7 C 0.087 3.913 8 C -0.126 4.126 9 C 0.049 3.951 10 C -0.510 4.510 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.124 4.124 19 C 0.112 3.888 20 C -0.135 4.135 21 C 0.101 3.899 22 N -0.733 5.733 23 C 0.552 3.448 24 O -0.511 6.511 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 5.304 -11.910 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.146 4.146 3 C -0.121 4.121 4 C 0.324 3.676 5 O -0.424 6.424 6 N -0.325 5.325 7 C -0.034 4.034 8 C -0.164 4.164 9 C 0.031 3.969 10 C -0.548 4.548 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.162 4.162 19 C -0.009 4.009 20 C -0.173 4.173 21 C -0.023 4.023 22 N -0.389 5.389 23 C 0.336 3.664 24 O -0.385 6.385 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.087 5.603 -12.115 14.284 hybrid contribution -0.180 -0.579 0.413 0.734 sum 4.907 5.024 -11.702 13.647 Atomic orbital electron populations 1.21921 0.94319 1.01885 1.03821 1.21727 0.98066 0.91014 1.03824 1.21651 0.97512 0.98951 0.93936 1.19562 0.80680 0.83892 0.83471 1.90698 1.38424 1.27862 1.85452 1.48110 1.45305 1.34257 1.04831 1.22403 0.92198 0.87943 1.00903 1.21978 1.00762 0.97998 0.95692 1.18626 0.93582 0.92131 0.92579 1.21242 0.97762 1.07561 1.28277 0.92658 1.24937 0.94819 0.97881 0.96230 1.69835 1.07581 1.30543 1.45190 0.86575 0.79586 0.81473 0.80617 1.19838 1.21046 1.21070 1.22016 0.99704 0.96897 0.97572 1.21728 0.97698 0.95716 0.85794 1.23052 0.92588 0.99274 1.02378 1.22082 0.88570 0.98723 0.92946 1.46077 1.13142 1.52549 1.27140 1.19975 0.83617 0.78035 0.84767 1.90669 1.22091 1.61909 1.63804 0.92454 0.92689 0.90360 0.90971 0.88768 0.90075 0.91757 0.87633 0.93979 0.95450 0.93045 0.92073 0.92881 0.92058 0.90391 0.87809 0.88466 0.89827 0.91004 0.75106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.40 37.16 0.35 -2.24 16 2 C -0.11 -1.50 4.64 -26.73 -0.12 -1.63 16 3 C -0.11 -1.61 0.28 -155.66 -0.04 -1.66 16 4 C 0.54 9.38 5.14 -10.98 -0.06 9.32 16 5 O -0.55 -11.48 15.54 5.56 0.09 -11.39 16 6 N -0.59 -10.09 2.97 -173.03 -0.51 -10.61 16 7 C 0.09 1.40 3.99 -3.93 -0.02 1.39 16 8 C -0.13 -2.58 4.90 -26.83 -0.13 -2.71 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.51 -13.17 8.56 -34.44 -0.29 -13.47 16 11 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 13 N -0.89 -23.51 11.30 55.43 0.63 -22.89 16 14 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 19 C 0.11 2.00 6.42 -3.71 -0.02 1.98 16 20 C -0.14 -1.35 4.89 -25.09 -0.12 -1.47 16 21 C 0.10 0.88 7.78 -3.12 -0.02 0.85 16 22 N -0.73 -8.22 6.24 -59.21 -0.37 -8.59 16 23 C 0.55 8.50 6.44 -10.86 -0.07 8.43 16 24 O -0.51 -9.65 15.41 5.56 0.09 -9.56 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.00 7.10 -51.93 -0.37 0.63 16 27 H 0.08 1.34 5.76 -51.93 -0.30 1.05 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.31 4.74 -51.93 -0.25 1.06 16 30 H 0.08 1.10 3.04 -51.93 -0.16 0.94 16 31 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.11 2.41 6.03 -51.93 -0.31 2.10 16 33 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.42 7.03 -51.93 -0.36 1.05 16 40 H 0.10 1.03 5.82 -51.93 -0.30 0.73 16 41 H 0.10 0.76 7.91 -51.93 -0.41 0.35 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.41 3.74 8.96 -40.82 -0.37 3.37 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -31.50 330.96 -7.68 -39.18 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.58 Total: 4.84 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.98 Total: -1.36 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.26 Total: -42.08 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.95 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.50 -7.68 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867312400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.203 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds