Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46875 * 2 1 4 4 C 1.50704 * 110.54212 * 57.36240 * 3 2 1 5 5 O 1.21277 * 119.99669 * 242.10391 * 4 3 2 6 6 N 1.34775 * 120.00108 * 62.09514 * 4 3 2 7 7 C 1.46929 * 120.63043 * 3.83761 * 6 4 3 8 8 C 1.52759 * 109.00686 * 233.57986 * 7 6 4 9 9 C 1.53043 * 109.38569 * 305.58952 * 8 7 6 10 10 C 1.50690 * 109.45116 * 181.25464 * 9 8 7 11 11 H 1.08000 * 120.00082 * 239.93769 * 10 9 8 12 12 C 1.37881 * 120.00413 * 59.93889 * 10 9 8 13 13 N 1.31514 * 119.99300 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00356 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47084 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47413 * 119.99764 * 14 12 10 17 17 H 1.48501 * 109.47266 * 239.99770 * 14 12 10 18 18 C 1.53039 * 109.54047 * 61.23476 * 9 8 7 19 19 C 1.46926 * 120.63056 * 184.10941 * 6 4 3 20 20 C 1.54635 * 110.48256 * 179.97438 * 3 2 1 21 21 C 1.54482 * 101.76105 * 143.47588 * 20 3 2 22 22 N 1.46757 * 105.47629 * 334.58522 * 21 20 3 23 23 C 1.34421 * 111.30366 * 17.01343 * 22 21 20 24 24 O 1.21276 * 124.94645 * 179.55669 * 23 22 21 25 25 H 1.08996 * 109.46988 * 182.67351 * 1 2 3 26 26 H 1.09000 * 109.46801 * 302.67386 * 1 2 3 27 27 H 1.09003 * 109.47249 * 62.67098 * 1 2 3 28 28 H 1.08999 * 109.47110 * 239.99991 * 2 1 3 29 29 H 1.09000 * 109.47290 * 119.99626 * 2 1 3 30 30 H 1.08997 * 109.58554 * 353.41128 * 7 6 4 31 31 H 1.08999 * 109.59044 * 113.83881 * 7 6 4 32 32 H 1.08996 * 109.56417 * 185.55012 * 8 7 6 33 33 H 1.08999 * 109.36183 * 65.49868 * 8 7 6 34 34 H 1.09003 * 109.45414 * 301.22288 * 9 8 7 35 35 H 0.97011 * 119.99800 * 180.02562 * 13 12 10 36 36 H 1.08990 * 109.49944 * 178.68464 * 18 9 8 37 37 H 1.09008 * 109.52167 * 58.60525 * 18 9 8 38 38 H 1.08994 * 109.58711 * 246.16188 * 19 6 4 39 39 H 1.09001 * 109.58379 * 6.44623 * 19 6 4 40 40 H 1.08996 * 110.96893 * 261.59059 * 20 3 2 41 41 H 1.08995 * 110.96862 * 25.36074 * 20 3 2 42 42 H 1.08996 * 110.24249 * 215.58220 * 21 20 3 43 43 H 1.09002 * 110.31976 * 93.62337 * 21 20 3 44 44 H 0.97004 * 124.35060 * 196.99489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4987 2.1948 1.1884 5 8 0.7849 3.1608 1.0207 6 7 1.8076 1.7939 2.4375 7 6 2.7374 0.6776 2.6570 8 6 2.0684 -0.3570 3.5599 9 6 1.5887 0.3237 4.8440 10 6 0.9560 -0.7014 5.7492 11 1 -0.0764 -0.5944 6.0477 12 6 1.6950 -1.7761 6.1965 13 7 2.9520 -1.9067 5.8326 14 14 0.9104 -3.0472 7.3180 15 1 -0.5034 -2.6737 7.5767 16 1 0.9592 -4.3804 6.6657 17 1 1.6517 -3.0978 8.6038 18 6 0.5600 1.4026 4.4978 19 6 1.2163 2.4608 3.6055 20 6 3.5861 1.4699 0.0006 21 6 3.8798 2.6905 -0.8995 22 7 2.7067 2.8257 -1.7710 23 6 1.6571 2.1395 -1.2870 24 8 0.5623 2.0872 -1.8061 25 1 -0.3633 -1.0265 0.0479 26 1 -0.3633 0.5548 0.8651 27 1 -0.3634 0.4718 -0.9130 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9889 0.2182 1.7011 31 1 3.6439 1.0461 3.1373 32 1 2.7835 -1.1410 3.8090 33 1 1.2160 -0.7936 3.0394 34 1 2.4381 0.7814 5.3513 35 1 3.4719 -2.6630 6.1469 36 1 0.2016 1.8710 5.4143 37 1 -0.2786 0.9499 3.9686 38 1 1.9961 2.9777 4.1647 39 1 0.4662 3.1794 3.2751 40 1 3.9730 1.6258 1.0076 41 1 3.9925 0.5572 -0.4350 42 1 4.7744 2.5125 -1.4961 43 1 4.0041 3.5873 -0.2925 44 1 2.6908 3.3440 -2.5908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867312400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -91.303525 kcal Electronic energy + Delta-G solvation = -25780.740186 eV Core-core repulsion = 22310.887618 eV Total energy + Delta-G solvation = -3469.852568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.62211 -40.30831 -38.35239 -37.51316 -35.81288 -35.05311 -32.90418 -31.75178 -30.97376 -28.66586 -27.87702 -25.19300 -24.27447 -23.79545 -23.09328 -22.38326 -20.85384 -19.59772 -18.52949 -18.34973 -17.90612 -17.43835 -16.61337 -16.48528 -16.00741 -15.68728 -15.30808 -14.90057 -14.87524 -14.69909 -14.53120 -14.40658 -14.28244 -13.97183 -13.78261 -13.56062 -13.24991 -12.92602 -12.81426 -12.74913 -12.45741 -12.38708 -12.22289 -12.08787 -11.87933 -11.81655 -11.44112 -11.00603 -10.96417 -10.78203 -10.49747 -10.33975 -10.08073 -9.57918 -8.05689 -6.17154 1.33997 1.41244 1.45717 1.49132 1.54667 2.09253 2.42117 2.46424 3.09155 3.21444 3.39052 3.43058 3.72535 3.97045 4.13362 4.23480 4.26426 4.31624 4.37581 4.44152 4.49994 4.57155 4.69197 4.74683 4.78792 4.85397 4.90028 4.96029 5.01505 5.02079 5.09736 5.19476 5.26674 5.34951 5.45948 5.54769 5.68384 5.81035 5.99961 6.03370 6.17729 6.41986 6.45669 6.91045 7.06221 7.22724 7.50139 8.97860 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.004489 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.351953 B = 6235.997984 C = 6287.632170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.116 4.116 4 C 0.537 3.463 5 O -0.587 6.587 6 N -0.592 5.592 7 C 0.098 3.902 8 C -0.116 4.116 9 C 0.047 3.953 10 C -0.534 4.534 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.907 5.907 14 Si 0.942 3.058 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.114 4.114 19 C 0.117 3.883 20 C -0.133 4.133 21 C 0.099 3.901 22 N -0.719 5.719 23 C 0.539 3.461 24 O -0.559 6.559 25 H 0.069 0.931 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 4.897 -12.938 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C -0.122 4.122 4 C 0.325 3.675 5 O -0.468 6.468 6 N -0.323 5.323 7 C -0.023 4.023 8 C -0.155 4.155 9 C 0.029 3.971 10 C -0.572 4.572 11 H 0.060 0.940 12 C -0.175 4.175 13 N -0.546 5.546 14 Si 0.769 3.231 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.152 4.152 19 C -0.005 4.005 20 C -0.170 4.170 21 C -0.024 4.024 22 N -0.374 5.374 23 C 0.324 3.676 24 O -0.436 6.436 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.504 5.205 -13.143 16.004 hybrid contribution -0.943 -0.427 0.769 1.290 sum 6.561 4.778 -12.373 14.798 Atomic orbital electron populations 1.21865 0.96441 1.01847 1.01515 1.21757 0.96190 0.91232 1.05204 1.21672 1.00674 0.98159 0.91738 1.20149 0.79753 0.83445 0.84182 1.90675 1.40161 1.29953 1.86038 1.48126 1.45265 1.34238 1.04696 1.22376 0.91650 0.86591 1.01717 1.21738 0.99915 0.98465 0.95341 1.18596 0.93270 0.92173 0.93101 1.21539 0.97443 1.08844 1.29419 0.94019 1.25506 0.95356 0.99287 0.97357 1.69915 1.08126 1.30968 1.45618 0.85752 0.78573 0.79577 0.79186 1.20211 1.20532 1.20673 1.21863 0.98626 0.96787 0.97969 1.21607 0.98068 0.94891 0.85951 1.23222 0.88723 1.01584 1.03468 1.22364 0.88819 0.98217 0.93029 1.46105 1.12913 1.50969 1.27422 1.20269 0.83727 0.78561 0.85092 1.90643 1.24091 1.63777 1.65132 0.91247 0.95853 0.91812 0.88033 0.88631 0.86809 0.90291 0.89612 0.95316 0.97327 0.92845 0.91962 0.94517 0.90358 0.90968 0.87359 0.85132 0.85401 0.90894 0.73933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.40 71.98 0.68 -4.44 16 2 C -0.11 -2.73 4.64 30.60 0.14 -2.59 16 3 C -0.12 -3.04 0.28 -52.93 -0.01 -3.06 16 4 C 0.54 18.30 5.14 87.66 0.45 18.75 16 5 O -0.59 -24.93 15.54 -3.02 -0.05 -24.97 16 6 N -0.59 -19.59 2.97 -819.74 -2.43 -22.02 16 7 C 0.10 2.95 3.99 86.22 0.34 3.29 16 8 C -0.12 -4.71 4.90 30.53 0.15 -4.56 16 9 C 0.05 2.16 2.07 -11.52 -0.02 2.14 16 10 C -0.53 -28.05 8.56 25.60 0.22 -27.83 16 11 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 12 C 0.02 1.26 5.30 84.66 0.45 1.71 16 13 N -0.91 -47.53 11.30 21.45 0.24 -47.29 16 14 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 19 C 0.12 4.14 6.42 86.36 0.55 4.70 16 20 C -0.13 -2.06 4.89 31.65 0.15 -1.91 16 21 C 0.10 1.27 7.78 86.83 0.68 1.95 16 22 N -0.72 -14.14 6.24 -459.82 -2.87 -17.00 16 23 C 0.54 15.86 6.44 87.90 0.57 16.43 16 24 O -0.56 -21.24 15.41 -3.02 -0.05 -21.28 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.02 0.86 7.10 -2.39 -0.02 0.84 16 27 H 0.06 2.24 5.76 -2.39 -0.01 2.23 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.42 4.74 -2.39 -0.01 2.40 16 30 H 0.11 2.71 3.04 -2.39 -0.01 2.71 16 31 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 32 H 0.09 3.88 6.03 -2.39 -0.01 3.86 16 33 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.26 13.09 8.31 -92.70 -0.77 12.32 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 2.66 7.03 -2.39 -0.02 2.64 16 40 H 0.11 1.65 5.82 -2.39 -0.01 1.64 16 41 H 0.13 1.24 7.91 -2.39 -0.02 1.22 16 42 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.42 6.60 8.96 -92.71 -0.83 5.77 16 Total: -1.00 -71.08 330.96 1.57 -69.51 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.19 Total: 19.08 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 4.51 Total: 0.12 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -5.06 Total: -86.31 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.09 Total: -46.26 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.08 1.57 -69.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867312400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.794 kcal (2) G-P(sol) polarization free energy of solvation -71.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds