Wall clock time and date at job start Tue Mar 31 2020 06:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 C 1.50709 * 110.43109 * 59.20417 * 3 2 1 5 5 O 1.21277 * 119.99926 * 244.71575 * 4 3 2 6 6 N 1.34771 * 119.99634 * 64.71564 * 4 3 2 7 7 C 1.46924 * 120.63542 * 355.58952 * 6 4 3 8 8 C 1.53190 * 108.77877 * 126.36526 * 7 6 4 9 9 C 1.53038 * 109.31301 * 54.63602 * 8 7 6 10 10 C 1.53049 * 109.53701 * 298.63552 * 9 8 7 11 11 H 1.09001 * 109.49537 * 301.41400 * 10 9 8 12 12 C 1.50701 * 109.49718 * 181.31770 * 10 9 8 13 13 H 1.07996 * 119.99881 * 274.35049 * 12 10 9 14 14 C 1.37880 * 120.00021 * 94.35065 * 12 10 9 15 15 N 1.31512 * 119.99951 * 183.78599 * 14 12 10 16 16 Si 1.86799 * 119.99822 * 3.78002 * 14 12 10 17 17 H 1.48496 * 109.47116 * 93.56013 * 16 14 12 18 18 H 1.48504 * 109.47072 * 213.55762 * 16 14 12 19 19 H 1.48498 * 109.47468 * 333.55835 * 16 14 12 20 20 C 1.46929 * 120.62606 * 175.30209 * 6 4 3 21 21 C 1.54627 * 110.48733 * 181.88756 * 3 2 1 22 22 C 1.54476 * 101.76539 * 93.88271 * 21 3 2 23 23 N 1.46767 * 105.47378 * 25.41457 * 22 21 3 24 24 C 1.34421 * 111.30107 * 342.98815 * 23 22 21 25 25 O 1.21279 * 124.93985 * 180.67151 * 24 23 22 26 26 H 1.09005 * 109.47043 * 185.12281 * 1 2 3 27 27 H 1.08996 * 109.47245 * 305.12379 * 1 2 3 28 28 H 1.08998 * 109.47278 * 65.12750 * 1 2 3 29 29 H 1.09000 * 109.46783 * 240.00684 * 2 1 3 30 30 H 1.09000 * 109.47183 * 120.00305 * 2 1 3 31 31 H 1.09002 * 109.58354 * 246.15130 * 7 6 4 32 32 H 1.08999 * 109.58393 * 6.43181 * 7 6 4 33 33 H 1.09003 * 109.49830 * 174.58450 * 8 7 6 34 34 H 1.08994 * 109.49930 * 294.68495 * 8 7 6 35 35 H 1.09002 * 109.46390 * 58.65352 * 9 8 7 36 36 H 1.09003 * 109.46612 * 178.63176 * 9 8 7 37 37 H 0.97001 * 120.00131 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.59018 * 353.42126 * 20 6 4 39 39 H 1.09005 * 109.58422 * 113.85073 * 20 6 4 40 40 H 1.09000 * 110.96769 * 212.00686 * 21 3 2 41 41 H 1.09001 * 110.96426 * 335.76431 * 21 3 2 42 42 H 1.08998 * 110.24755 * 144.41903 * 22 21 3 43 43 H 1.09003 * 110.24849 * 266.32939 * 22 21 3 44 44 H 0.96995 * 124.34948 * 162.97819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5336 2.1796 1.2132 5 8 0.7764 3.1176 1.0805 6 7 1.9222 1.7962 2.4453 7 6 2.7610 0.6039 2.6287 8 6 3.9989 0.9924 3.4433 9 6 3.5573 1.6570 4.7492 10 6 2.7674 2.9295 4.4343 11 1 3.3889 3.6082 3.8501 12 6 2.3608 3.6004 5.7209 13 1 1.4542 3.2985 6.2243 14 6 3.1462 4.5997 6.2555 15 7 2.8316 5.1336 7.4155 16 14 4.6570 5.1949 5.3322 17 1 4.2966 6.3696 4.4983 18 1 5.7105 5.5825 6.3045 19 1 5.1650 4.1058 4.4599 20 6 1.5203 2.5662 3.6304 21 6 3.5852 1.4703 -0.0477 22 6 3.8514 1.5949 -1.5643 23 7 2.6511 2.2296 -2.1216 24 6 1.6168 2.1538 -1.2664 25 8 0.5049 2.5877 -1.4810 26 1 -0.3633 -1.0236 0.0918 27 1 -0.3633 0.5912 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 2.1973 -0.1608 3.1629 32 1 3.0671 0.2194 1.6557 33 1 4.5812 0.0989 3.6686 34 1 4.6087 1.6893 2.8685 35 1 2.9272 0.9684 5.3121 36 1 4.4357 1.9125 5.3418 37 1 3.3843 5.8364 7.7918 38 1 1.0101 3.4774 3.3184 39 1 0.8533 1.9646 4.2480 40 1 3.9766 2.3343 0.4894 41 1 4.0043 0.5448 0.3472 42 1 4.7263 2.2197 -1.7436 43 1 3.9966 0.6082 -2.0041 44 1 2.6096 2.6499 -2.9948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869230293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:43 Heat of formation + Delta-G solvation = -67.465945 kcal Electronic energy + Delta-G solvation = -25764.507575 eV Core-core repulsion = 22295.688682 eV Total energy + Delta-G solvation = -3468.818893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48577 -39.05822 -36.91065 -36.49268 -34.54540 -33.12159 -31.72829 -30.78613 -30.13202 -27.66140 -25.30630 -25.04209 -23.16225 -22.31058 -21.68016 -21.44842 -19.28569 -18.44831 -17.53258 -16.92760 -16.50348 -15.90102 -15.64737 -15.11095 -14.57024 -14.47119 -14.36195 -13.83812 -13.72901 -13.55152 -13.29567 -13.13441 -12.91174 -12.62272 -12.58280 -12.41430 -12.14514 -11.96203 -11.80327 -11.42490 -11.18306 -10.98213 -10.95656 -10.67878 -10.42046 -10.04983 -9.85688 -9.70831 -9.60833 -9.36016 -9.19468 -8.99072 -8.57388 -8.07810 -6.12026 -4.12042 2.51837 2.92710 3.09775 3.25470 3.34253 3.34766 3.46667 3.99771 4.15806 4.38169 4.45061 4.64840 4.70740 4.96365 5.06189 5.08221 5.17531 5.22524 5.25862 5.31803 5.44854 5.50561 5.60922 5.70584 5.79811 5.86969 5.95417 5.97745 6.13518 6.23138 6.28873 6.35215 6.58525 6.65275 6.69431 6.81292 6.86352 6.88837 7.24557 7.38629 7.71324 7.83002 8.21898 8.45133 8.54889 8.92969 9.50694 11.01032 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.005100 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.791352 B = 5489.292325 C = 5602.209654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.107 4.107 3 C -0.117 4.117 4 C 0.529 3.471 5 O -0.521 6.521 6 N -0.603 5.603 7 C 0.094 3.906 8 C -0.140 4.140 9 C -0.111 4.111 10 C 0.004 3.996 11 H 0.035 0.965 12 C -0.512 4.512 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.262 1.262 20 C 0.125 3.875 21 C -0.130 4.130 22 C 0.104 3.896 23 N -0.737 5.737 24 C 0.542 3.458 25 O -0.495 6.495 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -13.960 -17.200 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.124 4.124 4 C 0.314 3.686 5 O -0.396 6.396 6 N -0.336 5.336 7 C -0.029 4.029 8 C -0.178 4.178 9 C -0.150 4.150 10 C -0.016 4.016 11 H 0.053 0.947 12 C -0.550 4.550 13 H 0.093 0.907 14 C -0.128 4.128 15 N -0.535 5.535 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.187 1.187 20 C 0.004 3.996 21 C -0.168 4.168 22 C -0.021 4.021 23 N -0.395 5.395 24 C 0.326 3.674 25 O -0.366 6.366 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.877 -13.114 -17.108 22.101 hybrid contribution 1.086 0.574 -0.627 1.379 sum 5.963 -12.541 -17.735 22.525 Atomic orbital electron populations 1.21821 0.94284 1.01719 1.03620 1.21687 0.97768 0.91387 1.03669 1.21684 0.97455 0.98561 0.94683 1.19617 0.81356 0.84178 0.83473 1.90776 1.34554 1.28809 1.85450 1.48256 1.50921 1.28006 1.06432 1.22158 0.92421 0.87597 1.00715 1.22057 0.96458 1.00484 0.98820 1.21836 1.00262 0.98536 0.94332 1.19437 0.92585 0.93705 0.95829 0.94689 1.20866 1.10216 1.18672 1.05258 0.90699 1.25030 0.97318 0.95882 0.94580 1.69900 1.39377 1.26792 1.17403 0.86875 0.83329 0.79562 0.79983 1.20380 1.21491 1.18655 1.21895 0.98731 0.95460 0.83519 1.22953 0.92661 1.05046 0.96129 1.22051 0.88208 0.98395 0.93423 1.46104 1.12305 1.60684 1.20416 1.19968 0.84348 0.78404 0.84724 1.90764 1.21028 1.46924 1.77908 0.92253 0.92006 0.91773 0.90744 0.89269 0.91506 0.89550 0.91821 0.92282 0.92597 0.92633 0.92599 0.89682 0.92148 0.89061 0.87863 0.90000 0.90780 0.75033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.36 37.16 0.35 -1.60 16 2 C -0.11 -1.10 4.66 -26.73 -0.12 -1.22 16 3 C -0.12 -1.52 0.28 -155.67 -0.04 -1.56 16 4 C 0.53 9.40 5.09 -10.98 -0.06 9.34 16 5 O -0.52 -11.86 14.80 -13.77 -0.20 -12.07 16 6 N -0.60 -10.20 2.98 -173.03 -0.52 -10.71 16 7 C 0.09 1.18 4.65 -3.71 -0.02 1.17 16 8 C -0.14 -1.94 6.08 -26.61 -0.16 -2.11 16 9 C -0.11 -2.09 5.15 -26.69 -0.14 -2.23 16 10 C 0.00 0.09 1.83 -91.87 -0.17 -0.08 16 11 H 0.03 0.82 5.20 -51.93 -0.27 0.55 16 12 C -0.51 -13.88 8.87 -34.44 -0.31 -14.18 16 13 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 16 Si 0.88 21.22 27.18 -169.99 -4.62 16.60 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -5.92 6.48 56.52 0.37 -5.55 16 20 C 0.12 2.57 5.66 -3.93 -0.02 2.55 16 21 C -0.13 -1.20 4.94 -25.10 -0.12 -1.33 16 22 C 0.10 0.73 7.78 -3.12 -0.02 0.71 16 23 N -0.74 -7.53 6.24 -59.20 -0.37 -7.90 16 24 C 0.54 8.05 6.43 -10.86 -0.07 7.98 16 25 O -0.49 -9.56 15.69 -13.77 -0.22 -9.77 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.94 7.07 -51.93 -0.37 0.57 16 28 H 0.06 0.89 6.79 -51.93 -0.35 0.54 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.77 5.14 -51.93 -0.27 0.51 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.81 2.38 -51.93 -0.12 0.69 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.98 7.03 -51.93 -0.37 1.61 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.01 7.91 -51.93 -0.41 0.60 16 41 H 0.10 0.66 6.28 -51.93 -0.33 0.33 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.41 3.44 8.96 -40.82 -0.37 3.08 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -35.56 332.29 -7.81 -43.38 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.67 Total: 2.29 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.00 Total: -0.57 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.11 Total: -44.86 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.42 Total: -21.84 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.62 Total: 16.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.56 -7.81 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.087 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds