Wall clock time and date at job start Tue Mar 31 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 C 1.50709 * 110.43109 * 59.20417 * 3 2 1 5 5 O 1.21277 * 119.99926 * 244.71575 * 4 3 2 6 6 N 1.34771 * 119.99634 * 64.71564 * 4 3 2 7 7 C 1.46924 * 120.63542 * 355.58952 * 6 4 3 8 8 C 1.53190 * 108.77877 * 126.36526 * 7 6 4 9 9 C 1.53038 * 109.31301 * 54.63602 * 8 7 6 10 10 C 1.53049 * 109.53701 * 298.63552 * 9 8 7 11 11 H 1.09001 * 109.49537 * 301.41400 * 10 9 8 12 12 C 1.50701 * 109.49718 * 181.31770 * 10 9 8 13 13 H 1.07996 * 119.99881 * 274.35049 * 12 10 9 14 14 C 1.37880 * 120.00021 * 94.35065 * 12 10 9 15 15 N 1.31512 * 119.99951 * 183.78599 * 14 12 10 16 16 Si 1.86799 * 119.99822 * 3.78002 * 14 12 10 17 17 H 1.48496 * 109.47116 * 93.56013 * 16 14 12 18 18 H 1.48504 * 109.47072 * 213.55762 * 16 14 12 19 19 H 1.48498 * 109.47468 * 333.55835 * 16 14 12 20 20 C 1.46929 * 120.62606 * 175.30209 * 6 4 3 21 21 C 1.54627 * 110.48733 * 181.88756 * 3 2 1 22 22 C 1.54476 * 101.76539 * 93.88271 * 21 3 2 23 23 N 1.46767 * 105.47378 * 25.41457 * 22 21 3 24 24 C 1.34421 * 111.30107 * 342.98815 * 23 22 21 25 25 O 1.21279 * 124.93985 * 180.67151 * 24 23 22 26 26 H 1.09005 * 109.47043 * 185.12281 * 1 2 3 27 27 H 1.08996 * 109.47245 * 305.12379 * 1 2 3 28 28 H 1.08998 * 109.47278 * 65.12750 * 1 2 3 29 29 H 1.09000 * 109.46783 * 240.00684 * 2 1 3 30 30 H 1.09000 * 109.47183 * 120.00305 * 2 1 3 31 31 H 1.09002 * 109.58354 * 246.15130 * 7 6 4 32 32 H 1.08999 * 109.58393 * 6.43181 * 7 6 4 33 33 H 1.09003 * 109.49830 * 174.58450 * 8 7 6 34 34 H 1.08994 * 109.49930 * 294.68495 * 8 7 6 35 35 H 1.09002 * 109.46390 * 58.65352 * 9 8 7 36 36 H 1.09003 * 109.46612 * 178.63176 * 9 8 7 37 37 H 0.97001 * 120.00131 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.59018 * 353.42126 * 20 6 4 39 39 H 1.09005 * 109.58422 * 113.85073 * 20 6 4 40 40 H 1.09000 * 110.96769 * 212.00686 * 21 3 2 41 41 H 1.09001 * 110.96426 * 335.76431 * 21 3 2 42 42 H 1.08998 * 110.24755 * 144.41903 * 22 21 3 43 43 H 1.09003 * 110.24849 * 266.32939 * 22 21 3 44 44 H 0.96995 * 124.34948 * 162.97819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5336 2.1796 1.2132 5 8 0.7764 3.1176 1.0805 6 7 1.9222 1.7962 2.4453 7 6 2.7610 0.6039 2.6287 8 6 3.9989 0.9924 3.4433 9 6 3.5573 1.6570 4.7492 10 6 2.7674 2.9295 4.4343 11 1 3.3889 3.6082 3.8501 12 6 2.3608 3.6004 5.7209 13 1 1.4542 3.2985 6.2243 14 6 3.1462 4.5997 6.2555 15 7 2.8316 5.1336 7.4155 16 14 4.6570 5.1949 5.3322 17 1 4.2966 6.3696 4.4983 18 1 5.7105 5.5825 6.3045 19 1 5.1650 4.1058 4.4599 20 6 1.5203 2.5662 3.6304 21 6 3.5852 1.4703 -0.0477 22 6 3.8514 1.5949 -1.5643 23 7 2.6511 2.2296 -2.1216 24 6 1.6168 2.1538 -1.2664 25 8 0.5049 2.5877 -1.4810 26 1 -0.3633 -1.0236 0.0918 27 1 -0.3633 0.5912 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 2.1973 -0.1608 3.1629 32 1 3.0671 0.2194 1.6557 33 1 4.5812 0.0989 3.6686 34 1 4.6087 1.6893 2.8685 35 1 2.9272 0.9684 5.3121 36 1 4.4357 1.9125 5.3418 37 1 3.3843 5.8364 7.7918 38 1 1.0101 3.4774 3.3184 39 1 0.8533 1.9646 4.2480 40 1 3.9766 2.3343 0.4894 41 1 4.0043 0.5448 0.3472 42 1 4.7263 2.2197 -1.7436 43 1 3.9966 0.6082 -2.0041 44 1 2.6096 2.6499 -2.9948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869230293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:42 Heat of formation + Delta-G solvation = -94.793871 kcal Electronic energy + Delta-G solvation = -25765.692603 eV Core-core repulsion = 22295.688682 eV Total energy + Delta-G solvation = -3470.003921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55340 -40.32431 -38.37149 -37.60697 -35.69780 -34.80636 -33.31610 -32.21447 -31.11813 -28.58094 -27.14256 -26.38094 -24.09927 -23.23823 -22.93479 -22.72824 -20.75798 -19.78264 -18.94957 -18.43397 -17.60065 -17.09828 -16.75978 -16.57136 -15.99686 -15.67227 -15.53204 -15.11341 -14.87569 -14.80427 -14.58255 -14.34425 -14.26507 -14.11024 -13.83403 -13.63552 -13.24209 -12.97411 -12.95161 -12.82630 -12.68663 -12.43288 -12.03480 -11.90177 -11.85295 -11.71793 -11.44204 -11.34594 -11.02583 -10.80196 -10.69087 -10.51705 -10.02547 -9.53868 -8.31486 -6.35243 1.30003 1.33388 1.41582 1.43606 1.62481 2.03019 2.32269 2.47666 3.05799 3.08730 3.28350 3.64784 3.75598 3.89956 4.08493 4.15977 4.23095 4.28744 4.33844 4.39943 4.45688 4.55570 4.66554 4.76727 4.81162 4.84713 4.86697 4.93311 4.99548 5.04198 5.07975 5.10855 5.17575 5.30415 5.31956 5.44701 5.56560 5.71139 5.80267 5.86873 6.01808 6.27308 6.51249 6.71618 7.16539 7.29238 7.30480 8.85571 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.005100 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.791352 B = 5489.292325 C = 5602.209654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.113 4.113 4 C 0.520 3.480 5 O -0.587 6.587 6 N -0.600 5.600 7 C 0.087 3.913 8 C -0.131 4.131 9 C -0.110 4.110 10 C 0.007 3.993 11 H 0.027 0.973 12 C -0.516 4.516 13 H 0.031 0.969 14 C 0.012 3.988 15 N -0.949 5.949 16 Si 0.938 3.062 17 H -0.286 1.286 18 H -0.282 1.282 19 H -0.228 1.228 20 C 0.135 3.865 21 C -0.130 4.130 22 C 0.103 3.897 23 N -0.725 5.725 24 C 0.525 3.475 25 O -0.558 6.558 26 H 0.087 0.913 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.265 0.735 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -17.783 -20.009 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.120 4.120 4 C 0.308 3.692 5 O -0.466 6.466 6 N -0.332 5.332 7 C -0.033 4.033 8 C -0.169 4.169 9 C -0.148 4.148 10 C -0.013 4.013 11 H 0.045 0.955 12 C -0.554 4.554 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.762 3.238 17 H -0.212 1.212 18 H -0.208 1.208 19 H -0.151 1.151 20 C 0.012 3.988 21 C -0.167 4.167 22 C -0.020 4.020 23 N -0.381 5.381 24 C 0.310 3.690 25 O -0.435 6.435 26 H 0.105 0.895 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.166 0.834 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.159 -17.011 -19.947 27.769 hybrid contribution -0.354 1.768 0.280 1.824 sum 8.805 -15.244 -19.667 26.395 Atomic orbital electron populations 1.21799 0.96670 1.02316 1.00622 1.21837 0.95642 0.89749 1.06811 1.21723 1.00334 0.99072 0.90838 1.20602 0.80170 0.83546 0.84854 1.90747 1.37453 1.31981 1.86466 1.48249 1.51255 1.28743 1.04941 1.22601 0.91516 0.85890 1.03313 1.22028 0.97220 1.02045 0.95608 1.21681 0.99068 0.96644 0.97445 1.19368 0.93439 0.95305 0.93169 0.95521 1.21201 1.08496 1.18864 1.06877 0.95038 1.25914 1.00996 0.96165 0.95396 1.70055 1.41318 1.28032 1.19541 0.85860 0.79432 0.79476 0.78993 1.21191 1.20822 1.15100 1.21375 0.97769 0.94597 0.85068 1.23147 0.88890 1.06592 0.98063 1.22434 0.87102 1.00847 0.91627 1.46174 1.12281 1.59480 1.20132 1.20464 0.84314 0.78221 0.86036 1.90728 1.23827 1.49700 1.79271 0.89451 0.95997 0.94158 0.86677 0.86663 0.89806 0.85159 0.87168 0.91721 0.92742 0.93677 0.92573 0.93810 0.92641 0.90831 0.83399 0.87653 0.86537 0.74149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.36 71.98 0.67 -3.02 16 2 C -0.10 -1.64 4.66 30.60 0.14 -1.50 16 3 C -0.11 -2.61 0.28 -52.93 -0.01 -2.62 16 4 C 0.52 18.46 5.09 87.66 0.45 18.90 16 5 O -0.59 -28.50 14.80 15.46 0.23 -28.27 16 6 N -0.60 -19.64 2.98 -819.73 -2.44 -22.08 16 7 C 0.09 1.77 4.65 86.36 0.40 2.17 16 8 C -0.13 -2.92 6.08 30.67 0.19 -2.73 16 9 C -0.11 -3.89 5.15 30.62 0.16 -3.73 16 10 C 0.01 0.31 1.83 -11.60 -0.02 0.29 16 11 H 0.03 1.24 5.20 -2.39 -0.01 1.23 16 12 C -0.52 -29.37 8.87 25.60 0.23 -29.15 16 13 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 14 C 0.01 0.72 5.47 84.66 0.46 1.18 16 15 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 16 Si 0.94 44.18 27.18 68.60 1.86 46.04 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.23 -9.41 6.48 99.48 0.64 -8.77 16 20 C 0.13 5.80 5.66 86.22 0.49 6.29 16 21 C -0.13 -1.65 4.94 31.65 0.16 -1.49 16 22 C 0.10 0.81 7.78 86.83 0.68 1.49 16 23 N -0.72 -12.51 6.24 -459.80 -2.87 -15.38 16 24 C 0.53 15.05 6.43 87.90 0.57 15.62 16 25 O -0.56 -22.55 15.69 15.45 0.24 -22.31 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.02 0.67 7.07 -2.39 -0.02 0.65 16 28 H 0.04 1.13 6.79 -2.39 -0.02 1.12 16 29 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.12 1.23 5.14 -2.39 -0.01 1.22 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 1.50 2.38 -2.39 -0.01 1.50 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 38 H 0.04 2.21 7.03 -2.39 -0.02 2.19 16 39 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 41 H 0.15 0.55 6.28 -2.39 -0.01 0.53 16 42 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.42 5.96 8.96 -92.71 -0.83 5.13 16 Total: -1.00 -90.80 332.29 2.00 -88.80 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.13 Total: 11.09 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.55 Total: 1.69 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.01 Total: -97.05 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: 0.47 Total: -50.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.86 Total: 46.04 kcal Total: -90.80 2.00 -88.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.989 kcal (2) G-P(sol) polarization free energy of solvation -90.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds