Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 C 1.50707 * 110.43271 * 302.09016 * 3 2 1 5 5 O 1.21277 * 119.99707 * 122.84869 * 4 3 2 6 6 N 1.34770 * 120.00010 * 302.85115 * 4 3 2 7 7 C 1.46928 * 120.63517 * 354.63028 * 6 4 3 8 8 C 1.53184 * 108.77781 * 233.88921 * 7 6 4 9 9 C 1.53039 * 109.31131 * 305.35761 * 8 7 6 10 10 C 1.53048 * 109.53650 * 61.36975 * 9 8 7 11 11 H 1.08999 * 109.52049 * 58.59948 * 10 9 8 12 12 C 1.50699 * 109.50041 * 178.67916 * 10 9 8 13 13 H 1.08004 * 119.99673 * 119.83804 * 12 10 9 14 14 C 1.37872 * 119.99959 * 299.84019 * 12 10 9 15 15 N 1.31507 * 120.00413 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99803 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47021 * 120.00005 * 16 14 12 19 19 H 1.48502 * 109.47224 * 239.99899 * 16 14 12 20 20 C 1.46932 * 120.63004 * 174.91246 * 6 4 3 21 21 C 1.54630 * 110.59891 * 179.47480 * 3 2 1 22 22 C 1.54478 * 101.76380 * 266.06343 * 21 3 2 23 23 N 1.46759 * 105.47289 * 334.58412 * 22 21 3 24 24 C 1.34421 * 111.30507 * 17.01622 * 23 22 21 25 25 O 1.21281 * 124.94778 * 179.55297 * 24 23 22 26 26 H 1.09008 * 109.46832 * 175.58027 * 1 2 3 27 27 H 1.08997 * 109.46803 * 295.57628 * 1 2 3 28 28 H 1.09000 * 109.47108 * 55.58205 * 1 2 3 29 29 H 1.08997 * 109.46860 * 239.99716 * 2 1 3 30 30 H 1.09001 * 109.47358 * 120.00310 * 2 1 3 31 31 H 1.09004 * 109.58365 * 353.67407 * 7 6 4 32 32 H 1.09000 * 109.58611 * 114.09589 * 7 6 4 33 33 H 1.09007 * 109.49557 * 185.41397 * 8 7 6 34 34 H 1.08991 * 109.52876 * 65.32814 * 8 7 6 35 35 H 1.08998 * 109.46670 * 301.35139 * 9 8 7 36 36 H 1.09003 * 109.46398 * 181.38435 * 9 8 7 37 37 H 0.97003 * 120.00549 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.58950 * 245.90248 * 20 6 4 39 39 H 1.09001 * 109.58176 * 6.32932 * 20 6 4 40 40 H 1.09000 * 110.96591 * 24.18007 * 21 3 2 41 41 H 1.09002 * 110.96994 * 147.94229 * 21 3 2 42 42 H 1.09002 * 110.24449 * 215.58665 * 22 21 3 43 43 H 1.08997 * 110.31896 * 93.62243 * 22 21 3 44 44 H 0.97002 * 124.35105 * 197.03691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5080 2.1886 -1.1965 5 8 0.8668 3.2061 -1.0406 6 7 1.7449 1.7251 -2.4396 7 6 2.6169 0.5617 -2.6514 8 6 3.7108 0.9414 -3.6542 9 6 3.0618 1.4809 -4.9309 10 6 2.2514 2.7368 -4.6017 11 1 2.9062 3.4872 -4.1588 12 6 1.6392 3.2858 -5.8646 13 1 0.5661 3.3705 -5.9519 14 6 2.4492 3.6801 -6.9084 15 7 3.7558 3.5765 -6.8022 16 14 1.6903 4.3600 -8.4740 17 1 0.2111 4.3727 -8.3422 18 1 2.1785 5.7441 -8.7001 19 1 2.0779 3.5043 -9.6241 20 6 1.1409 2.3774 -3.6095 21 6 3.5860 1.4730 0.0133 22 6 3.8858 1.5876 1.5243 23 7 2.6972 2.2160 2.1127 24 6 1.6441 2.1441 1.2805 25 8 0.5374 2.5778 1.5213 26 1 -0.3633 -1.0247 -0.0792 27 1 -0.3633 0.4437 0.9270 28 1 -0.3633 0.5809 -0.8478 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 3.0736 0.2704 -1.7054 32 1 2.0303 -0.2674 -3.0469 33 1 4.3068 0.0606 -3.8934 34 1 4.3526 1.7081 -3.2204 35 1 2.4014 0.7225 -5.3512 36 1 3.8373 1.7290 -5.6557 37 1 4.3257 3.8535 -7.5367 38 1 0.4340 1.6964 -4.0832 39 1 0.6237 3.2842 -3.2957 40 1 3.9978 0.5510 -0.3973 41 1 3.9637 2.3415 -0.5264 42 1 4.7634 2.2129 1.6884 43 1 4.0420 0.5987 1.9553 44 1 2.6745 2.6304 2.9895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869230294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -68.863216 kcal Electronic energy + Delta-G solvation = -25635.879383 eV Core-core repulsion = 22166.999899 eV Total energy + Delta-G solvation = -3468.879483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39636 -38.92849 -36.71917 -36.41293 -34.50602 -33.16999 -31.29057 -30.57555 -29.88164 -27.56180 -25.20098 -24.78244 -23.08815 -22.27135 -21.64911 -21.35278 -19.30049 -18.23359 -17.43357 -16.62287 -16.20694 -15.81723 -15.46626 -15.01248 -14.58106 -14.40762 -14.29031 -13.71539 -13.62516 -13.36775 -13.15808 -13.01822 -12.79293 -12.65138 -12.40268 -12.08102 -12.04666 -11.76658 -11.63413 -11.20550 -11.01213 -10.89227 -10.77504 -10.68690 -10.26012 -9.94759 -9.81063 -9.65002 -9.46360 -9.26782 -9.11817 -8.81375 -8.39753 -7.88950 -6.03104 -4.09688 2.58930 3.00540 3.16981 3.28472 3.36868 3.41330 3.57443 4.07866 4.24880 4.42326 4.52744 4.71910 4.81264 5.03100 5.15925 5.21225 5.27972 5.30130 5.35061 5.49775 5.60284 5.64249 5.73611 5.82372 5.86488 6.02349 6.08318 6.30129 6.33317 6.38156 6.46125 6.64833 6.71988 6.79858 6.91373 6.96925 7.14854 7.31501 7.68376 7.89951 7.99471 8.06373 8.27039 8.37015 8.64779 8.94223 9.55410 11.02523 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004401 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.065424 B = 6361.300382 C = 6568.635752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.116 4.116 4 C 0.530 3.470 5 O -0.527 6.527 6 N -0.598 5.598 7 C 0.095 3.905 8 C -0.135 4.135 9 C -0.112 4.112 10 C 0.040 3.960 11 H 0.029 0.971 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.118 3.882 21 C -0.129 4.129 22 C 0.104 3.896 23 N -0.737 5.737 24 C 0.544 3.456 25 O -0.498 6.498 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -10.945 14.760 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.123 4.123 4 C 0.315 3.685 5 O -0.403 6.403 6 N -0.330 5.330 7 C -0.027 4.027 8 C -0.173 4.173 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.003 4.003 21 C -0.167 4.167 22 C -0.020 4.020 23 N -0.395 5.395 24 C 0.328 3.672 25 O -0.370 6.370 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.254 -10.171 14.738 18.200 hybrid contribution -0.081 0.493 -0.601 0.782 sum 3.174 -9.678 14.137 17.424 Atomic orbital electron populations 1.21818 0.94423 1.01711 1.03460 1.21697 0.97670 0.91532 1.03731 1.21680 0.97543 0.98464 0.94594 1.19581 0.80601 0.84876 0.83429 1.90751 1.40267 1.24104 1.85208 1.48144 1.47865 1.31077 1.05958 1.22171 0.92578 0.88061 0.99936 1.22018 0.96910 1.00292 0.98110 1.21624 1.00878 0.97260 0.95259 1.18972 0.92281 0.93767 0.92864 0.95281 1.21122 0.93202 1.41565 0.99223 0.92435 1.24920 0.94801 0.95476 0.98566 1.69873 1.02879 1.47881 1.32225 0.86537 0.79581 0.78686 0.83214 1.19712 1.21041 1.21049 1.22014 0.97134 0.96901 0.84232 1.22922 0.92471 1.05096 0.96167 1.22053 0.88426 0.98438 0.93122 1.46102 1.11888 1.61055 1.20443 1.19977 0.84206 0.78179 0.84867 1.90751 1.21851 1.46944 1.77484 0.92266 0.91833 0.92091 0.89141 0.90873 0.90021 0.91900 0.92441 0.92366 0.94566 0.88667 0.93061 0.92604 0.90320 0.87832 0.88993 0.89976 0.90811 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.39 37.16 0.35 -1.69 16 2 C -0.11 -1.20 4.64 -26.73 -0.12 -1.32 16 3 C -0.12 -1.58 0.28 -155.67 -0.04 -1.63 16 4 C 0.53 9.86 5.03 -10.98 -0.06 9.80 16 5 O -0.53 -12.39 14.86 -12.94 -0.19 -12.59 16 6 N -0.60 -10.78 2.97 -172.77 -0.51 -11.29 16 7 C 0.10 1.35 4.51 -3.71 -0.02 1.33 16 8 C -0.14 -2.21 6.08 -26.62 -0.16 -2.37 16 9 C -0.11 -2.42 4.96 -26.69 -0.13 -2.55 16 10 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 11 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -24.66 11.32 55.43 0.63 -24.04 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.12 2.55 5.67 -3.71 -0.02 2.53 16 21 C -0.13 -1.28 5.05 -25.10 -0.13 -1.41 16 22 C 0.10 0.78 7.78 -3.13 -0.02 0.76 16 23 N -0.74 -7.85 6.24 -59.21 -0.37 -8.22 16 24 C 0.54 8.35 6.39 -10.86 -0.07 8.28 16 25 O -0.50 -9.84 15.83 -12.95 -0.20 -10.05 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.06 0.92 6.79 -51.93 -0.35 0.57 16 28 H 0.06 0.96 7.05 -51.93 -0.37 0.59 16 29 H 0.09 0.88 5.00 -51.93 -0.26 0.62 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.88 2.55 -51.93 -0.13 0.75 16 32 H 0.06 0.84 8.09 -51.93 -0.42 0.41 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 2.35 6.05 -51.93 -0.31 2.03 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 40 H 0.10 0.74 6.25 -51.93 -0.32 0.42 16 41 H 0.09 1.08 7.91 -51.93 -0.41 0.66 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.41 3.58 8.96 -40.82 -0.37 3.21 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -34.04 332.95 -8.33 -42.37 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.66 Total: 2.72 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.02 Total: 0.04 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.25 Total: -43.54 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.40 Total: -22.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.04 -8.33 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.495 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds