Wall clock time and date at job start Tue Mar 31 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 C 1.50707 * 110.43271 * 302.09016 * 3 2 1 5 5 O 1.21277 * 119.99707 * 122.84869 * 4 3 2 6 6 N 1.34770 * 120.00010 * 302.85115 * 4 3 2 7 7 C 1.46928 * 120.63517 * 354.63028 * 6 4 3 8 8 C 1.53184 * 108.77781 * 233.88921 * 7 6 4 9 9 C 1.53039 * 109.31131 * 305.35761 * 8 7 6 10 10 C 1.53048 * 109.53650 * 61.36975 * 9 8 7 11 11 H 1.08999 * 109.52049 * 58.59948 * 10 9 8 12 12 C 1.50699 * 109.50041 * 178.67916 * 10 9 8 13 13 H 1.08004 * 119.99673 * 119.83804 * 12 10 9 14 14 C 1.37872 * 119.99959 * 299.84019 * 12 10 9 15 15 N 1.31507 * 120.00413 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99803 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47021 * 120.00005 * 16 14 12 19 19 H 1.48502 * 109.47224 * 239.99899 * 16 14 12 20 20 C 1.46932 * 120.63004 * 174.91246 * 6 4 3 21 21 C 1.54630 * 110.59891 * 179.47480 * 3 2 1 22 22 C 1.54478 * 101.76380 * 266.06343 * 21 3 2 23 23 N 1.46759 * 105.47289 * 334.58412 * 22 21 3 24 24 C 1.34421 * 111.30507 * 17.01622 * 23 22 21 25 25 O 1.21281 * 124.94778 * 179.55297 * 24 23 22 26 26 H 1.09008 * 109.46832 * 175.58027 * 1 2 3 27 27 H 1.08997 * 109.46803 * 295.57628 * 1 2 3 28 28 H 1.09000 * 109.47108 * 55.58205 * 1 2 3 29 29 H 1.08997 * 109.46860 * 239.99716 * 2 1 3 30 30 H 1.09001 * 109.47358 * 120.00310 * 2 1 3 31 31 H 1.09004 * 109.58365 * 353.67407 * 7 6 4 32 32 H 1.09000 * 109.58611 * 114.09589 * 7 6 4 33 33 H 1.09007 * 109.49557 * 185.41397 * 8 7 6 34 34 H 1.08991 * 109.52876 * 65.32814 * 8 7 6 35 35 H 1.08998 * 109.46670 * 301.35139 * 9 8 7 36 36 H 1.09003 * 109.46398 * 181.38435 * 9 8 7 37 37 H 0.97003 * 120.00549 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.58950 * 245.90248 * 20 6 4 39 39 H 1.09001 * 109.58176 * 6.32932 * 20 6 4 40 40 H 1.09000 * 110.96591 * 24.18007 * 21 3 2 41 41 H 1.09002 * 110.96994 * 147.94229 * 21 3 2 42 42 H 1.09002 * 110.24449 * 215.58665 * 22 21 3 43 43 H 1.08997 * 110.31896 * 93.62243 * 22 21 3 44 44 H 0.97002 * 124.35105 * 197.03691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5080 2.1886 -1.1965 5 8 0.8668 3.2061 -1.0406 6 7 1.7449 1.7251 -2.4396 7 6 2.6169 0.5617 -2.6514 8 6 3.7108 0.9414 -3.6542 9 6 3.0618 1.4809 -4.9309 10 6 2.2514 2.7368 -4.6017 11 1 2.9062 3.4872 -4.1588 12 6 1.6392 3.2858 -5.8646 13 1 0.5661 3.3705 -5.9519 14 6 2.4492 3.6801 -6.9084 15 7 3.7558 3.5765 -6.8022 16 14 1.6903 4.3600 -8.4740 17 1 0.2111 4.3727 -8.3422 18 1 2.1785 5.7441 -8.7001 19 1 2.0779 3.5043 -9.6241 20 6 1.1409 2.3774 -3.6095 21 6 3.5860 1.4730 0.0133 22 6 3.8858 1.5876 1.5243 23 7 2.6972 2.2160 2.1127 24 6 1.6441 2.1441 1.2805 25 8 0.5374 2.5778 1.5213 26 1 -0.3633 -1.0247 -0.0792 27 1 -0.3633 0.4437 0.9270 28 1 -0.3633 0.5809 -0.8478 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 3.0736 0.2704 -1.7054 32 1 2.0303 -0.2674 -3.0469 33 1 4.3068 0.0606 -3.8934 34 1 4.3526 1.7081 -3.2204 35 1 2.4014 0.7225 -5.3512 36 1 3.8373 1.7290 -5.6557 37 1 4.3257 3.8535 -7.5367 38 1 0.4340 1.6964 -4.0832 39 1 0.6237 3.2842 -3.2957 40 1 3.9978 0.5510 -0.3973 41 1 3.9637 2.3415 -0.5264 42 1 4.7634 2.2129 1.6884 43 1 4.0420 0.5987 1.9553 44 1 2.6745 2.6304 2.9895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869230294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:45 Heat of formation + Delta-G solvation = -93.634957 kcal Electronic energy + Delta-G solvation = -25636.953566 eV Core-core repulsion = 22166.999899 eV Total energy + Delta-G solvation = -3469.953667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53786 -40.28504 -38.28673 -37.60396 -35.76733 -34.80762 -32.90190 -32.00888 -31.07910 -28.53892 -27.08169 -26.27211 -24.10700 -23.38088 -22.95425 -22.70431 -20.83204 -19.60090 -18.58943 -18.30050 -17.55984 -17.10128 -16.71293 -16.61912 -16.09494 -15.58351 -15.44880 -14.95809 -14.92756 -14.72554 -14.49057 -14.28249 -14.15102 -14.11704 -13.66237 -13.58743 -13.08428 -12.93451 -12.86588 -12.68338 -12.67311 -12.52629 -12.16122 -11.92267 -11.76505 -11.73593 -11.50926 -11.21023 -10.84936 -10.78219 -10.58478 -10.40069 -10.03163 -9.47913 -8.11315 -6.25814 1.38335 1.40745 1.43724 1.52289 1.61095 2.05840 2.41483 2.49417 3.09536 3.15254 3.29521 3.63988 3.76492 3.89591 4.12615 4.23353 4.30917 4.32197 4.40859 4.42833 4.55465 4.60611 4.76563 4.78277 4.81616 4.88219 4.90318 4.96365 5.00912 5.07872 5.10375 5.16478 5.32013 5.33224 5.49564 5.60118 5.62728 5.85802 5.95351 6.01613 6.16349 6.35969 6.54268 6.83115 7.17329 7.29391 7.42108 8.92379 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004401 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.065424 B = 6361.300382 C = 6568.635752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.112 4.112 4 C 0.522 3.478 5 O -0.591 6.591 6 N -0.597 5.597 7 C 0.093 3.907 8 C -0.127 4.127 9 C -0.106 4.106 10 C 0.043 3.957 11 H -0.015 1.015 12 C -0.539 4.539 13 H 0.047 0.953 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.952 3.048 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.130 3.870 21 C -0.129 4.129 22 C 0.104 3.896 23 N -0.724 5.724 24 C 0.528 3.472 25 O -0.560 6.560 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.022 0.978 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -14.343 15.884 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.119 4.119 4 C 0.310 3.690 5 O -0.472 6.472 6 N -0.329 5.329 7 C -0.027 4.027 8 C -0.165 4.165 9 C -0.144 4.144 10 C 0.024 3.976 11 H 0.004 0.996 12 C -0.578 4.578 13 H 0.065 0.935 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.008 3.992 21 C -0.166 4.166 22 C -0.018 4.018 23 N -0.380 5.380 24 C 0.313 3.687 25 O -0.437 6.437 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.164 0.836 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 5.649 -13.617 15.880 21.668 hybrid contribution -0.789 1.616 -0.945 2.032 sum 4.859 -12.001 14.935 19.766 Atomic orbital electron populations 1.21798 0.96526 1.02441 1.00586 1.21840 0.95794 0.89783 1.06752 1.21719 1.00180 0.99065 0.90925 1.20580 0.79411 0.84306 0.84719 1.90716 1.43063 1.27201 1.86190 1.48180 1.48058 1.31793 1.04824 1.22530 0.91668 0.86763 1.01749 1.21937 0.97455 1.01424 0.95649 1.21419 0.99646 0.95873 0.97473 1.18865 0.92470 0.94104 0.92167 0.99647 1.21462 0.92976 1.42524 1.00807 0.93465 1.25616 0.95266 0.95674 1.01323 1.69992 1.03742 1.48180 1.33041 0.85603 0.78680 0.78044 0.79901 1.19698 1.20922 1.19825 1.21540 0.96343 0.96058 0.85280 1.23092 0.88928 1.06279 0.98342 1.22422 0.87414 1.01012 0.91001 1.46153 1.11711 1.59833 1.20269 1.20417 0.84248 0.78014 0.86052 1.90714 1.24527 1.49638 1.78790 0.89377 0.94100 0.95890 0.86824 0.86781 0.85508 0.89688 0.88401 0.93218 0.94402 0.91877 0.92878 0.92025 0.93977 0.83647 0.91209 0.87616 0.86418 0.74055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.39 71.98 0.68 -3.19 16 2 C -0.10 -1.87 4.64 30.60 0.14 -1.73 16 3 C -0.11 -2.83 0.28 -52.93 -0.01 -2.85 16 4 C 0.52 19.81 5.03 87.66 0.44 20.25 16 5 O -0.59 -29.87 14.86 14.67 0.22 -29.65 16 6 N -0.60 -21.54 2.97 -818.91 -2.43 -23.97 16 7 C 0.09 2.32 4.51 86.36 0.39 2.71 16 8 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16 9 C -0.11 -4.57 4.96 30.62 0.15 -4.42 16 10 C 0.04 2.19 2.25 -11.46 -0.03 2.16 16 11 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 12 C -0.54 -30.33 8.56 25.60 0.22 -30.11 16 13 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 14 C 0.02 1.14 5.30 84.65 0.45 1.59 16 15 N -0.91 -51.67 11.32 21.44 0.24 -51.42 16 16 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 C 0.13 5.94 5.67 86.36 0.49 6.43 16 21 C -0.13 -2.00 5.05 31.65 0.16 -1.84 16 22 C 0.10 1.02 7.78 86.83 0.68 1.69 16 23 N -0.72 -13.50 6.24 -459.82 -2.87 -16.37 16 24 C 0.53 15.91 6.39 87.90 0.56 16.47 16 25 O -0.56 -23.15 15.83 14.66 0.23 -22.92 16 26 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.04 1.19 6.79 -2.39 -0.02 1.17 16 28 H 0.02 0.72 7.05 -2.39 -0.02 0.70 16 29 H 0.11 1.51 5.00 -2.39 -0.01 1.50 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 2.00 2.55 -2.38 -0.01 2.00 16 32 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 33 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 3.15 6.05 -2.39 -0.01 3.13 16 37 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.04 2.19 7.00 -2.39 -0.02 2.17 16 40 H 0.15 1.02 6.25 -2.39 -0.01 1.00 16 41 H 0.07 1.45 7.91 -2.39 -0.02 1.43 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.42 6.40 8.96 -92.71 -0.83 5.57 16 Total: -1.00 -84.98 332.95 2.11 -82.88 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.19 Total: 11.89 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.50 Total: 3.55 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -5.06 Total: -91.77 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: 0.45 Total: -52.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -84.98 2.11 -82.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.758 kcal (2) G-P(sol) polarization free energy of solvation -84.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds