Wall clock time and date at job start Tue Mar 31 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46730 * 2 1 4 4 C 1.50698 * 110.43765 * 294.59579 * 3 2 1 5 5 O 1.21283 * 119.99987 * 0.17136 * 4 3 2 6 6 N 1.34780 * 120.00268 * 180.16671 * 4 3 2 7 7 C 1.46931 * 120.62735 * 356.22317 * 6 4 3 8 8 C 1.53193 * 108.77462 * 126.38804 * 7 6 4 9 9 C 1.53039 * 109.31045 * 54.63347 * 8 7 6 10 10 C 1.53045 * 109.54271 * 298.63400 * 9 8 7 11 11 H 1.08999 * 109.49780 * 301.38363 * 10 9 8 12 12 C 1.50699 * 109.49994 * 181.31693 * 10 9 8 13 13 H 1.08002 * 119.99822 * 240.00248 * 12 10 9 14 14 C 1.37874 * 120.00259 * 60.00056 * 12 10 9 15 15 N 1.31515 * 119.99920 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00291 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47342 * 180.02562 * 16 14 12 18 18 H 1.48508 * 109.46914 * 300.00188 * 16 14 12 19 19 H 1.48497 * 109.47277 * 59.99800 * 16 14 12 20 20 C 1.46917 * 120.63243 * 176.22028 * 6 4 3 21 21 C 1.54630 * 110.59697 * 171.98155 * 3 2 1 22 22 C 1.54478 * 101.76504 * 266.06481 * 21 3 2 23 23 N 1.46758 * 105.47335 * 334.58390 * 22 21 3 24 24 C 1.34422 * 111.30527 * 17.01606 * 23 22 21 25 25 O 1.21272 * 124.94585 * 179.55671 * 24 23 22 26 26 H 1.09003 * 109.47628 * 53.38560 * 1 2 3 27 27 H 1.09004 * 109.47032 * 173.38675 * 1 2 3 28 28 H 1.08996 * 109.47225 * 293.37670 * 1 2 3 29 29 H 1.09000 * 109.46964 * 240.00731 * 2 1 3 30 30 H 1.08994 * 109.47463 * 120.00336 * 2 1 3 31 31 H 1.09000 * 109.58512 * 6.60897 * 7 6 4 32 32 H 1.08997 * 109.58685 * 246.17757 * 7 6 4 33 33 H 1.08999 * 109.49803 * 294.68756 * 8 7 6 34 34 H 1.08992 * 109.52844 * 174.59900 * 8 7 6 35 35 H 1.09004 * 109.46162 * 178.61625 * 9 8 7 36 36 H 1.09004 * 109.45964 * 58.65655 * 9 8 7 37 37 H 0.96996 * 120.00502 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.58659 * 113.82218 * 20 6 4 39 39 H 1.09001 * 109.58797 * 353.39982 * 20 6 4 40 40 H 1.08998 * 110.97222 * 24.18037 * 21 3 2 41 41 H 1.09002 * 110.97270 * 147.94548 * 21 3 2 42 42 H 1.09001 * 110.24969 * 215.58204 * 22 21 3 43 43 H 1.08996 * 110.32069 * 93.62202 * 22 21 3 44 44 H 0.96999 * 124.35334 * 196.99461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6611 2.1345 -1.2840 5 8 1.0340 1.5369 -2.1329 6 7 2.0190 3.4176 -1.4890 7 6 2.7062 4.1802 -0.4378 8 6 3.9955 4.7693 -1.0187 9 6 3.6606 5.5846 -2.2698 10 6 3.0299 4.6706 -3.3229 11 1 3.7215 3.8639 -3.5657 12 6 2.7301 5.4676 -4.5662 13 1 1.7150 5.5439 -4.9271 14 6 3.7517 6.0994 -5.2431 15 7 4.9878 6.0061 -4.8040 16 14 3.3801 7.0879 -6.7839 17 1 4.6403 7.6624 -7.3194 18 1 2.7676 6.2008 -7.8054 19 1 2.4367 8.1857 -6.4522 20 6 1.7296 4.0803 -2.7679 21 6 3.5725 1.4777 0.2019 22 6 3.6846 1.6587 1.7320 23 7 2.4344 2.3089 2.1419 24 6 1.4914 2.1980 1.1904 25 8 0.3647 2.6388 1.2743 26 1 -0.3634 0.6129 -0.8249 27 1 -0.3633 -1.0209 -0.1184 28 1 -0.3633 0.4077 0.9433 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.9491 3.5189 0.3939 32 1 2.0604 4.9864 -0.0898 33 1 4.6778 3.9614 -1.2829 34 1 4.4665 5.4159 -0.2785 35 1 4.5732 6.0252 -2.6712 36 1 2.9589 6.3772 -2.0097 37 1 5.7065 6.4508 -5.2799 38 1 1.0042 4.8784 -2.6100 39 1 1.3281 3.3531 -3.4737 40 1 4.0293 0.5400 -0.1144 41 1 4.0160 2.3230 -0.3244 42 1 4.5370 2.2929 1.9754 43 1 3.7840 0.6899 2.2214 44 1 2.3050 2.7604 2.9906 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869230295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:49 Heat of formation + Delta-G solvation = -66.986978 kcal Electronic energy + Delta-G solvation = -25857.796176 eV Core-core repulsion = 22388.998053 eV Total energy + Delta-G solvation = -3468.798123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70333 -38.82810 -36.99868 -36.57494 -33.80450 -33.52947 -31.43068 -30.65726 -29.77069 -27.62053 -25.15452 -24.65577 -23.00350 -22.22250 -21.71243 -21.44672 -19.35268 -18.19401 -17.59398 -16.79073 -16.47360 -16.11736 -15.20633 -14.82599 -14.56003 -14.40816 -14.40219 -13.94159 -13.42905 -13.30151 -13.08634 -12.97872 -12.74709 -12.66431 -12.43462 -12.07903 -12.00269 -11.85294 -11.54365 -10.97540 -10.94671 -10.88912 -10.82725 -10.74694 -10.34538 -9.98412 -9.84656 -9.78772 -9.48284 -9.37286 -9.13472 -8.84587 -8.39932 -7.91136 -6.03844 -4.10580 2.43287 2.81153 3.18824 3.31253 3.35226 3.37645 3.45701 4.19005 4.28027 4.41738 4.48494 4.68754 4.85381 5.00227 5.22477 5.24482 5.30911 5.40908 5.46470 5.56691 5.62076 5.71264 5.75254 5.84056 6.01022 6.08179 6.22905 6.28667 6.36470 6.44480 6.54437 6.59086 6.66493 6.76905 6.77753 6.94179 7.12841 7.29573 7.66561 7.87667 7.97186 8.04292 8.08124 8.35257 8.58620 8.92563 9.54368 11.01752 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.004714 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.025692 B = 5938.674444 C = 6415.066388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.116 4.116 4 C 0.535 3.465 5 O -0.535 6.535 6 N -0.595 5.595 7 C 0.092 3.908 8 C -0.133 4.133 9 C -0.113 4.113 10 C 0.041 3.959 11 H 0.030 0.970 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.118 3.882 21 C -0.139 4.139 22 C 0.102 3.898 23 N -0.735 5.735 24 C 0.538 3.462 25 O -0.511 6.511 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -8.923 15.460 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.320 3.680 5 O -0.412 6.412 6 N -0.327 5.327 7 C -0.031 4.031 8 C -0.171 4.171 9 C -0.151 4.151 10 C 0.022 3.978 11 H 0.048 0.952 12 C -0.553 4.553 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.003 4.003 21 C -0.177 4.177 22 C -0.022 4.022 23 N -0.392 5.392 24 C 0.323 3.677 25 O -0.385 6.385 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.403 -8.984 14.881 17.388 hybrid contribution 0.021 0.883 -0.311 0.936 sum 0.424 -8.101 14.571 16.677 Atomic orbital electron populations 1.21904 0.94519 1.01919 1.03311 1.21208 0.97552 0.90749 1.02666 1.21757 0.97653 0.98773 0.94119 1.19555 0.79577 0.81836 0.87009 1.90635 1.39983 1.64948 1.45626 1.48187 1.56923 1.10817 1.16726 1.22131 0.94984 0.95890 0.90089 1.22024 0.95300 1.00089 0.99726 1.21639 1.03258 0.97639 0.92520 1.18969 0.90840 0.94750 0.93199 0.95198 1.21037 0.94044 1.31235 1.08941 0.92493 1.24918 0.94986 0.96346 0.97458 1.69850 0.99334 1.43947 1.39750 0.86633 0.77500 0.80377 0.83364 1.21310 1.20201 1.20252 1.22043 1.00103 0.95949 0.82204 1.23084 0.93083 1.05869 0.95642 1.22105 0.86796 0.98411 0.94935 1.46220 1.14084 1.58598 1.20335 1.20269 0.84681 0.78461 0.84295 1.90779 1.18594 1.48928 1.80214 0.90324 0.92814 0.92961 0.89847 0.91486 0.90288 0.92038 0.92250 0.92420 0.88487 0.94536 0.92925 0.92626 0.90156 0.88165 0.87898 0.89492 0.90591 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.09 37.16 0.34 -1.95 16 2 C -0.08 -1.06 4.60 -26.73 -0.12 -1.18 16 3 C -0.12 -1.62 0.44 -155.67 -0.07 -1.69 16 4 C 0.53 10.04 6.17 -10.98 -0.07 9.98 16 5 O -0.53 -11.56 13.60 5.55 0.08 -11.49 16 6 N -0.60 -11.48 2.92 -172.77 -0.50 -11.99 16 7 C 0.09 1.52 4.64 -3.71 -0.02 1.50 16 8 C -0.13 -2.29 5.84 -26.61 -0.16 -2.45 16 9 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 10 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.57 11.31 55.43 0.63 -23.94 16 16 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.12 2.62 5.65 -3.71 -0.02 2.60 16 21 C -0.14 -1.44 5.43 -25.10 -0.14 -1.57 16 22 C 0.10 0.73 7.34 -3.13 -0.02 0.71 16 23 N -0.74 -7.01 5.60 -59.21 -0.33 -7.34 16 24 C 0.54 7.59 4.45 -10.86 -0.05 7.54 16 25 O -0.51 -9.21 16.55 5.56 0.09 -9.12 16 26 H 0.08 1.39 5.96 -51.93 -0.31 1.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.77 6.77 -51.93 -0.35 0.42 16 29 H 0.08 1.07 7.99 -51.93 -0.41 0.65 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.07 2.41 -51.93 -0.13 0.95 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.90 7.03 -51.93 -0.36 1.53 16 40 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.10 1.24 4.56 -51.93 -0.24 1.00 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.41 3.10 8.96 -40.82 -0.37 2.74 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -32.13 329.64 -7.75 -39.89 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.61 Total: 3.87 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.05 Total: -0.85 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.21 Total: -43.27 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.13 -7.75 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.102 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds