Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46730 * 2 1 4 4 C 1.50698 * 110.43765 * 294.59579 * 3 2 1 5 5 O 1.21283 * 119.99987 * 0.17136 * 4 3 2 6 6 N 1.34780 * 120.00268 * 180.16671 * 4 3 2 7 7 C 1.46931 * 120.62735 * 356.22317 * 6 4 3 8 8 C 1.53193 * 108.77462 * 126.38804 * 7 6 4 9 9 C 1.53039 * 109.31045 * 54.63347 * 8 7 6 10 10 C 1.53045 * 109.54271 * 298.63400 * 9 8 7 11 11 H 1.08999 * 109.49780 * 301.38363 * 10 9 8 12 12 C 1.50699 * 109.49994 * 181.31693 * 10 9 8 13 13 H 1.08002 * 119.99822 * 240.00248 * 12 10 9 14 14 C 1.37874 * 120.00259 * 60.00056 * 12 10 9 15 15 N 1.31515 * 119.99920 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00291 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47342 * 180.02562 * 16 14 12 18 18 H 1.48508 * 109.46914 * 300.00188 * 16 14 12 19 19 H 1.48497 * 109.47277 * 59.99800 * 16 14 12 20 20 C 1.46917 * 120.63243 * 176.22028 * 6 4 3 21 21 C 1.54630 * 110.59697 * 171.98155 * 3 2 1 22 22 C 1.54478 * 101.76504 * 266.06481 * 21 3 2 23 23 N 1.46758 * 105.47335 * 334.58390 * 22 21 3 24 24 C 1.34422 * 111.30527 * 17.01606 * 23 22 21 25 25 O 1.21272 * 124.94585 * 179.55671 * 24 23 22 26 26 H 1.09003 * 109.47628 * 53.38560 * 1 2 3 27 27 H 1.09004 * 109.47032 * 173.38675 * 1 2 3 28 28 H 1.08996 * 109.47225 * 293.37670 * 1 2 3 29 29 H 1.09000 * 109.46964 * 240.00731 * 2 1 3 30 30 H 1.08994 * 109.47463 * 120.00336 * 2 1 3 31 31 H 1.09000 * 109.58512 * 6.60897 * 7 6 4 32 32 H 1.08997 * 109.58685 * 246.17757 * 7 6 4 33 33 H 1.08999 * 109.49803 * 294.68756 * 8 7 6 34 34 H 1.08992 * 109.52844 * 174.59900 * 8 7 6 35 35 H 1.09004 * 109.46162 * 178.61625 * 9 8 7 36 36 H 1.09004 * 109.45964 * 58.65655 * 9 8 7 37 37 H 0.96996 * 120.00502 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.58659 * 113.82218 * 20 6 4 39 39 H 1.09001 * 109.58797 * 353.39982 * 20 6 4 40 40 H 1.08998 * 110.97222 * 24.18037 * 21 3 2 41 41 H 1.09002 * 110.97270 * 147.94548 * 21 3 2 42 42 H 1.09001 * 110.24969 * 215.58204 * 22 21 3 43 43 H 1.08996 * 110.32069 * 93.62202 * 22 21 3 44 44 H 0.96999 * 124.35334 * 196.99461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6611 2.1345 -1.2840 5 8 1.0340 1.5369 -2.1329 6 7 2.0190 3.4176 -1.4890 7 6 2.7062 4.1802 -0.4378 8 6 3.9955 4.7693 -1.0187 9 6 3.6606 5.5846 -2.2698 10 6 3.0299 4.6706 -3.3229 11 1 3.7215 3.8639 -3.5657 12 6 2.7301 5.4676 -4.5662 13 1 1.7150 5.5439 -4.9271 14 6 3.7517 6.0994 -5.2431 15 7 4.9878 6.0061 -4.8040 16 14 3.3801 7.0879 -6.7839 17 1 4.6403 7.6624 -7.3194 18 1 2.7676 6.2008 -7.8054 19 1 2.4367 8.1857 -6.4522 20 6 1.7296 4.0803 -2.7679 21 6 3.5725 1.4777 0.2019 22 6 3.6846 1.6587 1.7320 23 7 2.4344 2.3089 2.1419 24 6 1.4914 2.1980 1.1904 25 8 0.3647 2.6388 1.2743 26 1 -0.3634 0.6129 -0.8249 27 1 -0.3633 -1.0209 -0.1184 28 1 -0.3633 0.4077 0.9433 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.9491 3.5189 0.3939 32 1 2.0604 4.9864 -0.0898 33 1 4.6778 3.9614 -1.2829 34 1 4.4665 5.4159 -0.2785 35 1 4.5732 6.0252 -2.6712 36 1 2.9589 6.3772 -2.0097 37 1 5.7065 6.4508 -5.2799 38 1 1.0042 4.8784 -2.6100 39 1 1.3281 3.3531 -3.4737 40 1 4.0293 0.5400 -0.1144 41 1 4.0160 2.3230 -0.3244 42 1 4.5370 2.2929 1.9754 43 1 3.7840 0.6899 2.2214 44 1 2.3050 2.7604 2.9906 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869230295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = -89.975411 kcal Electronic energy + Delta-G solvation = -25858.793029 eV Core-core repulsion = 22388.998053 eV Total energy + Delta-G solvation = -3469.794977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.83356 -40.21819 -38.60235 -37.63905 -35.41075 -34.83987 -33.14277 -32.21586 -30.95659 -28.64834 -27.07502 -26.18574 -24.08367 -23.41119 -23.02123 -22.78783 -20.91127 -19.62576 -18.69310 -18.37910 -17.84430 -17.44236 -16.68484 -16.45348 -16.07215 -15.78570 -15.38445 -15.13009 -14.94485 -14.67996 -14.48290 -14.27708 -14.24679 -13.88007 -13.65156 -13.61988 -13.18904 -12.97115 -12.88028 -12.76101 -12.61909 -12.53409 -12.07490 -11.99944 -11.87854 -11.81121 -11.59238 -11.29869 -10.92374 -10.86821 -10.67315 -10.44440 -10.02435 -9.56661 -8.11816 -6.26220 1.32787 1.41312 1.42295 1.47871 1.50433 1.97750 2.34843 2.43191 3.14769 3.19438 3.26950 3.52106 3.72812 3.90891 3.94555 4.13473 4.25223 4.32843 4.37193 4.42386 4.46149 4.56128 4.70829 4.76108 4.78377 4.81296 4.88035 4.92788 4.97417 5.02319 5.10761 5.17572 5.25340 5.38725 5.43236 5.50466 5.59426 5.74455 5.90547 5.94802 6.09205 6.33142 6.45039 6.80741 7.08384 7.16752 7.41365 8.91872 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.004714 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.025692 B = 5938.674444 C = 6415.066388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.117 4.117 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.603 5.603 7 C 0.096 3.904 8 C -0.122 4.122 9 C -0.106 4.106 10 C 0.046 3.954 11 H -0.002 1.002 12 C -0.542 4.542 13 H 0.047 0.953 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.953 3.047 17 H -0.279 1.279 18 H -0.277 1.277 19 H -0.272 1.272 20 C 0.130 3.870 21 C -0.140 4.140 22 C 0.104 3.896 23 N -0.715 5.715 24 C 0.532 3.468 25 O -0.561 6.561 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -9.712 18.113 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.120 4.120 3 C -0.123 4.123 4 C 0.310 3.690 5 O -0.454 6.454 6 N -0.334 5.334 7 C -0.026 4.026 8 C -0.160 4.160 9 C -0.144 4.144 10 C 0.027 3.973 11 H 0.016 0.984 12 C -0.581 4.581 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.778 3.222 17 H -0.204 1.204 18 H -0.202 1.202 19 H -0.197 1.197 20 C 0.007 3.993 21 C -0.178 4.178 22 C -0.019 4.019 23 N -0.371 5.371 24 C 0.317 3.683 25 O -0.439 6.439 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.366 -9.774 17.591 20.263 hybrid contribution -0.584 1.083 -1.163 1.693 sum 1.782 -8.691 16.428 18.670 Atomic orbital electron populations 1.21835 0.96304 1.02095 1.01126 1.21291 0.95980 0.90228 1.04501 1.21814 1.00606 0.98776 0.91148 1.20566 0.78457 0.81381 0.88569 1.90608 1.41447 1.65738 1.47599 1.48251 1.57500 1.11538 1.16083 1.22280 0.94036 0.96177 0.90085 1.21916 0.95929 1.00038 0.98090 1.21438 1.01366 0.97511 0.94131 1.18841 0.91049 0.93900 0.93510 0.98426 1.21370 0.93885 1.32231 1.10584 0.93462 1.25604 0.94850 0.97145 1.00107 1.69960 0.99849 1.44291 1.40647 0.85700 0.77605 0.78998 0.79871 1.20378 1.20208 1.19716 1.21595 0.98801 0.95147 0.83725 1.23205 0.89659 1.06711 0.98218 1.22450 0.86232 1.00953 0.92294 1.46189 1.13793 1.57346 1.19798 1.20316 0.84614 0.78299 0.85109 1.90762 1.20821 1.51055 1.81219 0.94566 0.90888 0.93526 0.90214 0.87175 0.86778 0.92552 0.91814 0.88899 0.91108 0.95308 0.92753 0.93347 0.92621 0.85588 0.89593 0.86219 0.86887 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 9.09 71.98 0.65 -3.80 16 2 C -0.08 -1.90 4.60 30.59 0.14 -1.76 16 3 C -0.12 -3.06 0.44 -52.93 -0.02 -3.08 16 4 C 0.52 20.03 6.17 87.66 0.54 20.57 16 5 O -0.57 -26.20 13.60 -3.04 -0.04 -26.24 16 6 N -0.60 -23.82 2.92 -818.91 -2.39 -26.20 16 7 C 0.10 3.05 4.64 86.36 0.40 3.45 16 8 C -0.12 -4.01 5.84 30.67 0.18 -3.83 16 9 C -0.11 -4.79 4.96 30.62 0.15 -4.64 16 10 C 0.05 2.35 2.25 -11.46 -0.03 2.33 16 11 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 12 C -0.54 -30.50 8.56 25.60 0.22 -30.28 16 13 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 14 C 0.02 1.24 5.30 84.65 0.45 1.69 16 15 N -0.91 -51.02 11.31 21.45 0.24 -50.77 16 16 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 C 0.13 6.12 5.65 86.37 0.49 6.60 16 21 C -0.14 -2.35 5.43 31.65 0.17 -2.18 16 22 C 0.10 0.86 7.34 86.83 0.64 1.50 16 23 N -0.71 -10.50 5.60 -459.83 -2.57 -13.08 16 24 C 0.53 13.88 4.45 87.90 0.39 14.28 16 25 O -0.56 -20.02 16.55 -3.01 -0.05 -20.07 16 26 H 0.04 1.33 5.96 -2.39 -0.01 1.32 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.05 1.35 6.77 -2.39 -0.02 1.34 16 29 H 0.08 1.91 7.99 -2.39 -0.02 1.89 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 2.78 2.41 -2.39 -0.01 2.78 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 2.07 7.13 -2.39 -0.02 2.05 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 3.58 6.04 -2.39 -0.01 3.57 16 36 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.85 7.03 -2.39 -0.02 2.83 16 40 H 0.13 1.51 7.90 -2.39 -0.02 1.49 16 41 H 0.09 1.78 4.56 -2.39 -0.01 1.77 16 42 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.43 4.48 8.96 -92.71 -0.83 3.65 16 Total: -1.00 -76.31 329.64 1.78 -74.54 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.19 Total: 15.18 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.37 Total: 0.86 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -4.72 Total: -90.05 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.09 Total: -46.31 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -76.31 1.78 -74.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.440 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds