Wall clock time and date at job start Tue Mar 31 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.50702 * 110.53991 * 62.98880 * 3 2 1 5 5 O 1.21284 * 119.99685 * 8.23940 * 4 3 2 6 6 N 1.34778 * 120.00046 * 188.23440 * 4 3 2 7 7 C 1.46928 * 120.62900 * 354.42400 * 6 4 3 8 8 C 1.52760 * 109.00594 * 233.58335 * 7 6 4 9 9 C 1.53046 * 109.38321 * 305.58711 * 8 7 6 10 10 C 1.53038 * 109.53501 * 61.24397 * 9 8 7 11 11 H 1.09000 * 109.50134 * 58.58221 * 10 9 8 12 12 C 1.50695 * 109.52260 * 178.66725 * 10 9 8 13 13 H 1.08001 * 120.00529 * 119.85643 * 12 10 9 14 14 C 1.37879 * 119.99847 * 299.85158 * 12 10 9 15 15 N 1.31510 * 120.00103 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99862 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47145 * 89.99855 * 16 14 12 18 18 H 1.48496 * 109.46948 * 210.00129 * 16 14 12 19 19 H 1.48502 * 109.46885 * 330.00036 * 16 14 12 20 20 C 1.46925 * 120.62863 * 174.70461 * 6 4 3 21 21 C 1.54621 * 110.48657 * 185.60542 * 3 2 1 22 22 C 1.54480 * 101.80062 * 93.89962 * 21 3 2 23 23 N 1.46763 * 105.47546 * 25.39739 * 22 21 3 24 24 C 1.34419 * 111.29756 * 342.98585 * 23 22 21 25 25 O 1.21280 * 124.94330 * 180.41793 * 24 23 22 26 26 H 1.09004 * 109.47317 * 306.05889 * 1 2 3 27 27 H 1.09004 * 109.47010 * 66.05438 * 1 2 3 28 28 H 1.08998 * 109.47148 * 186.05847 * 1 2 3 29 29 H 1.08997 * 109.46951 * 240.00201 * 2 1 3 30 30 H 1.08996 * 109.47025 * 120.00309 * 2 1 3 31 31 H 1.08994 * 109.58757 * 353.41930 * 7 6 4 32 32 H 1.08999 * 109.58586 * 113.84527 * 7 6 4 33 33 H 1.09008 * 109.56261 * 185.55622 * 8 7 6 34 34 H 1.08995 * 109.39174 * 65.51622 * 8 7 6 35 35 H 1.08999 * 109.45863 * 301.22380 * 9 8 7 36 36 H 1.09003 * 109.44821 * 181.25403 * 9 8 7 37 37 H 0.97004 * 120.00044 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.58380 * 246.15321 * 20 6 4 39 39 H 1.08995 * 109.58814 * 6.58237 * 20 6 4 40 40 H 1.09005 * 110.97194 * 335.75935 * 21 3 2 41 41 H 1.09005 * 110.97135 * 212.03581 * 21 3 2 42 42 H 1.09002 * 110.24886 * 144.40104 * 22 21 3 43 43 H 1.09000 * 110.24526 * 266.31008 * 22 21 3 44 44 H 0.96994 * 124.35187 * 162.96622 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6120 2.1546 1.2573 5 8 1.0856 1.5339 2.1565 6 7 1.8143 3.4813 1.3825 7 6 2.5587 4.2250 0.3570 8 6 3.6945 4.9956 1.0276 9 6 3.1241 5.8685 2.1478 10 6 2.4547 4.9798 3.1987 11 1 3.1842 4.2743 3.5965 12 6 1.9219 5.8370 4.3177 13 1 0.8660 5.8340 4.5445 14 6 2.7825 6.6252 5.0520 15 7 4.0682 6.6292 4.7756 16 14 2.1220 7.6873 6.4397 17 1 2.1439 6.9148 7.7077 18 1 2.9699 8.8980 6.5829 19 1 0.7272 8.0933 6.1314 20 6 1.3000 4.2100 2.5500 21 6 3.5795 1.4722 -0.1415 22 6 3.7534 1.6302 -1.6683 23 7 2.5220 2.2759 -2.1380 24 6 1.5413 2.1805 -1.2237 25 8 0.4199 2.6218 -1.3592 26 1 -0.3634 0.6049 0.8308 27 1 -0.3633 0.4171 -0.9393 28 1 -0.3633 -1.0219 0.1085 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.9722 3.5281 -0.3718 32 1 1.8905 4.9262 -0.1430 33 1 4.1914 5.6274 0.2913 34 1 4.4127 4.2904 1.4458 35 1 2.3882 6.5571 1.7326 36 1 3.9307 6.4357 2.6125 37 1 4.6737 7.1835 5.2926 38 1 0.5271 4.9099 2.2324 39 1 0.8834 3.5031 3.2675 40 1 4.0214 0.5387 0.2070 41 1 4.0037 2.3243 0.3897 42 1 4.6162 2.2595 -1.8866 43 1 3.8713 0.6534 -2.1375 44 1 2.4280 2.7153 -2.9976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869230296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:52 Heat of formation + Delta-G solvation = -69.194798 kcal Electronic energy + Delta-G solvation = -25848.141935 eV Core-core repulsion = 22379.248074 eV Total energy + Delta-G solvation = -3468.893862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67812 -38.81399 -36.98649 -36.56181 -33.81179 -33.50896 -31.43270 -30.62978 -29.82413 -27.61613 -25.13877 -24.66091 -23.00615 -22.19892 -21.71200 -21.44654 -19.35994 -18.19402 -17.56630 -16.81471 -16.42582 -16.09795 -15.17240 -14.88814 -14.50630 -14.40686 -14.38427 -13.92816 -13.44551 -13.28884 -13.13648 -12.98085 -12.72924 -12.68397 -12.45232 -12.05934 -12.00328 -11.89716 -11.57743 -10.98349 -10.95287 -10.88241 -10.81956 -10.71688 -10.33517 -9.97209 -9.84221 -9.76644 -9.46849 -9.37998 -9.14312 -8.81989 -8.39095 -7.89196 -6.02577 -4.09126 2.44769 2.82251 3.18188 3.30438 3.36706 3.39248 3.46163 4.16883 4.26349 4.42710 4.47047 4.67458 4.85940 4.99170 5.20634 5.24882 5.30663 5.39494 5.45006 5.58124 5.61314 5.68770 5.77747 5.82453 5.99468 6.09232 6.21673 6.30047 6.38238 6.45878 6.52582 6.58341 6.66995 6.77860 6.78713 6.95966 7.14298 7.31292 7.68261 7.89377 7.98821 8.05862 8.09067 8.36765 8.59087 8.94283 9.55761 11.03111 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.004712 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.099085 B = 5940.388634 C = 6410.694842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.116 4.116 4 C 0.535 3.465 5 O -0.535 6.535 6 N -0.594 5.594 7 C 0.094 3.906 8 C -0.133 4.133 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.030 0.970 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.135 4.135 22 C 0.102 3.898 23 N -0.736 5.736 24 C 0.538 3.462 25 O -0.510 6.510 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -10.273 -15.248 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.320 3.680 5 O -0.413 6.413 6 N -0.325 5.325 7 C -0.029 4.029 8 C -0.171 4.171 9 C -0.150 4.150 10 C 0.022 3.978 11 H 0.048 0.952 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.003 4.003 21 C -0.172 4.172 22 C -0.022 4.022 23 N -0.393 5.393 24 C 0.323 3.677 25 O -0.384 6.384 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.265 -10.316 -14.661 18.069 hybrid contribution -0.110 0.927 0.241 0.964 sum 2.154 -9.389 -14.420 17.342 Atomic orbital electron populations 1.21886 0.94567 1.01896 1.03286 1.21211 0.97507 0.90789 1.02695 1.21783 0.97685 0.98786 0.94067 1.19534 0.79187 0.82154 0.87075 1.90647 1.44093 1.65391 1.41158 1.48167 1.53818 1.06841 1.23703 1.22013 0.94578 0.95845 0.90476 1.21930 0.96594 0.99224 0.99365 1.21632 1.01462 0.97957 0.93964 1.18966 0.92277 0.93747 0.92805 0.95187 1.21077 0.94256 1.24829 1.14985 0.92453 1.24925 0.94813 0.96793 0.97220 1.69866 1.02399 1.40324 1.40291 0.86577 0.78928 0.79886 0.82527 1.20645 1.21266 1.19867 1.22038 0.98110 0.94749 0.85418 1.22979 0.92832 1.05604 0.95828 1.22097 0.87336 0.98500 0.94299 1.46208 1.13353 1.59298 1.20457 1.20291 0.84540 0.78316 0.84593 1.90782 1.19435 1.48438 1.79724 0.90652 0.92798 0.92725 0.91465 0.89763 0.90391 0.92105 0.92423 0.92359 0.94552 0.88538 0.93001 0.92597 0.90139 0.88095 0.88362 0.89525 0.90578 0.74834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.19 37.16 0.34 -1.92 16 2 C -0.08 -1.05 4.57 -26.73 -0.12 -1.17 16 3 C -0.12 -1.61 0.44 -155.64 -0.07 -1.68 16 4 C 0.53 10.03 5.97 -10.98 -0.07 9.96 16 5 O -0.54 -11.57 13.82 5.55 0.08 -11.49 16 6 N -0.59 -11.56 2.97 -173.03 -0.51 -12.08 16 7 C 0.09 1.56 4.41 -3.93 -0.02 1.55 16 8 C -0.13 -2.34 5.95 -26.83 -0.16 -2.50 16 9 C -0.11 -2.52 4.97 -26.69 -0.13 -2.65 16 10 C 0.04 1.02 2.25 -91.66 -0.21 0.81 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 16 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.12 2.64 5.67 -3.71 -0.02 2.62 16 21 C -0.13 -1.35 5.42 -25.10 -0.14 -1.49 16 22 C 0.10 0.71 7.35 -3.12 -0.02 0.69 16 23 N -0.74 -6.94 5.62 -59.18 -0.33 -7.27 16 24 C 0.54 7.53 4.28 -10.83 -0.05 7.48 16 25 O -0.51 -9.15 16.59 5.56 0.09 -9.06 16 26 H 0.07 1.32 6.06 -51.93 -0.31 1.00 16 27 H 0.05 0.79 6.77 -51.93 -0.35 0.44 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 31 H 0.08 1.06 2.47 -51.93 -0.13 0.93 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 2.43 6.05 -51.93 -0.31 2.12 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.92 7.00 -51.93 -0.36 1.56 16 40 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 41 H 0.10 1.13 5.62 -51.93 -0.29 0.84 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.41 3.09 8.96 -40.82 -0.37 2.72 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -32.48 331.38 -7.82 -40.30 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.70 Total: 3.54 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.05 Total: -0.92 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.22 Total: -43.53 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.17 Total: -20.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.48 -7.82 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.891 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds