Wall clock time and date at job start Tue Mar 31 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.50702 * 110.53991 * 62.98880 * 3 2 1 5 5 O 1.21284 * 119.99685 * 8.23940 * 4 3 2 6 6 N 1.34778 * 120.00046 * 188.23440 * 4 3 2 7 7 C 1.46928 * 120.62900 * 354.42400 * 6 4 3 8 8 C 1.52760 * 109.00594 * 233.58335 * 7 6 4 9 9 C 1.53046 * 109.38321 * 305.58711 * 8 7 6 10 10 C 1.53038 * 109.53501 * 61.24397 * 9 8 7 11 11 H 1.09000 * 109.50134 * 58.58221 * 10 9 8 12 12 C 1.50695 * 109.52260 * 178.66725 * 10 9 8 13 13 H 1.08001 * 120.00529 * 119.85643 * 12 10 9 14 14 C 1.37879 * 119.99847 * 299.85158 * 12 10 9 15 15 N 1.31510 * 120.00103 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99862 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47145 * 89.99855 * 16 14 12 18 18 H 1.48496 * 109.46948 * 210.00129 * 16 14 12 19 19 H 1.48502 * 109.46885 * 330.00036 * 16 14 12 20 20 C 1.46925 * 120.62863 * 174.70461 * 6 4 3 21 21 C 1.54621 * 110.48657 * 185.60542 * 3 2 1 22 22 C 1.54480 * 101.80062 * 93.89962 * 21 3 2 23 23 N 1.46763 * 105.47546 * 25.39739 * 22 21 3 24 24 C 1.34419 * 111.29756 * 342.98585 * 23 22 21 25 25 O 1.21280 * 124.94330 * 180.41793 * 24 23 22 26 26 H 1.09004 * 109.47317 * 306.05889 * 1 2 3 27 27 H 1.09004 * 109.47010 * 66.05438 * 1 2 3 28 28 H 1.08998 * 109.47148 * 186.05847 * 1 2 3 29 29 H 1.08997 * 109.46951 * 240.00201 * 2 1 3 30 30 H 1.08996 * 109.47025 * 120.00309 * 2 1 3 31 31 H 1.08994 * 109.58757 * 353.41930 * 7 6 4 32 32 H 1.08999 * 109.58586 * 113.84527 * 7 6 4 33 33 H 1.09008 * 109.56261 * 185.55622 * 8 7 6 34 34 H 1.08995 * 109.39174 * 65.51622 * 8 7 6 35 35 H 1.08999 * 109.45863 * 301.22380 * 9 8 7 36 36 H 1.09003 * 109.44821 * 181.25403 * 9 8 7 37 37 H 0.97004 * 120.00044 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.58380 * 246.15321 * 20 6 4 39 39 H 1.08995 * 109.58814 * 6.58237 * 20 6 4 40 40 H 1.09005 * 110.97194 * 335.75935 * 21 3 2 41 41 H 1.09005 * 110.97135 * 212.03581 * 21 3 2 42 42 H 1.09002 * 110.24886 * 144.40104 * 22 21 3 43 43 H 1.09000 * 110.24526 * 266.31008 * 22 21 3 44 44 H 0.96994 * 124.35187 * 162.96622 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6120 2.1546 1.2573 5 8 1.0856 1.5339 2.1565 6 7 1.8143 3.4813 1.3825 7 6 2.5587 4.2250 0.3570 8 6 3.6945 4.9956 1.0276 9 6 3.1241 5.8685 2.1478 10 6 2.4547 4.9798 3.1987 11 1 3.1842 4.2743 3.5965 12 6 1.9219 5.8370 4.3177 13 1 0.8660 5.8340 4.5445 14 6 2.7825 6.6252 5.0520 15 7 4.0682 6.6292 4.7756 16 14 2.1220 7.6873 6.4397 17 1 2.1439 6.9148 7.7077 18 1 2.9699 8.8980 6.5829 19 1 0.7272 8.0933 6.1314 20 6 1.3000 4.2100 2.5500 21 6 3.5795 1.4722 -0.1415 22 6 3.7534 1.6302 -1.6683 23 7 2.5220 2.2759 -2.1380 24 6 1.5413 2.1805 -1.2237 25 8 0.4199 2.6218 -1.3592 26 1 -0.3634 0.6049 0.8308 27 1 -0.3633 0.4171 -0.9393 28 1 -0.3633 -1.0219 0.1085 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.9722 3.5281 -0.3718 32 1 1.8905 4.9262 -0.1430 33 1 4.1914 5.6274 0.2913 34 1 4.4127 4.2904 1.4458 35 1 2.3882 6.5571 1.7326 36 1 3.9307 6.4357 2.6125 37 1 4.6737 7.1835 5.2926 38 1 0.5271 4.9099 2.2324 39 1 0.8834 3.5031 3.2675 40 1 4.0214 0.5387 0.2070 41 1 4.0037 2.3243 0.3897 42 1 4.6162 2.2595 -1.8866 43 1 3.8713 0.6534 -2.1375 44 1 2.4280 2.7153 -2.9976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869230296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:51 Heat of formation + Delta-G solvation = -92.614487 kcal Electronic energy + Delta-G solvation = -25849.157489 eV Core-core repulsion = 22379.248074 eV Total energy + Delta-G solvation = -3469.909416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.80221 -40.20794 -38.60514 -37.60932 -35.41221 -34.84021 -33.15981 -32.20965 -31.00007 -28.63701 -27.08071 -26.20238 -24.07764 -23.39527 -23.03420 -22.77079 -20.95078 -19.61640 -18.66883 -18.38321 -17.86733 -17.38623 -16.70681 -16.42221 -16.07528 -15.73699 -15.37076 -15.11075 -14.97924 -14.68932 -14.57197 -14.28820 -14.24392 -13.88733 -13.66701 -13.61092 -13.18714 -12.97984 -12.90526 -12.76073 -12.62758 -12.55595 -12.06587 -11.98931 -11.88469 -11.82170 -11.61261 -11.31393 -10.92580 -10.86267 -10.67921 -10.45937 -10.01780 -9.56217 -8.12676 -6.27216 1.35374 1.39868 1.40857 1.48769 1.51272 1.98235 2.34885 2.42466 3.13914 3.18497 3.27155 3.52440 3.73375 3.91053 3.93743 4.14239 4.25175 4.32320 4.35911 4.41675 4.45733 4.55284 4.69614 4.75780 4.77724 4.81114 4.86912 4.92732 4.96966 5.02495 5.09568 5.17142 5.22830 5.36247 5.41878 5.48807 5.58449 5.76179 5.89445 5.96422 6.08064 6.32073 6.45665 6.80132 7.08252 7.18555 7.40481 8.91333 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.004712 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.099085 B = 5940.388634 C = 6410.694842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C -0.117 4.117 4 C 0.523 3.477 5 O -0.575 6.575 6 N -0.603 5.603 7 C 0.099 3.901 8 C -0.122 4.122 9 C -0.106 4.106 10 C 0.046 3.954 11 H -0.005 1.005 12 C -0.541 4.541 13 H 0.048 0.952 14 C 0.021 3.979 15 N -0.910 5.910 16 Si 0.954 3.046 17 H -0.278 1.278 18 H -0.277 1.277 19 H -0.272 1.272 20 C 0.130 3.870 21 C -0.136 4.136 22 C 0.104 3.896 23 N -0.716 5.716 24 C 0.531 3.469 25 O -0.560 6.560 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.263 0.737 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -11.163 -17.813 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.120 4.120 3 C -0.124 4.124 4 C 0.311 3.689 5 O -0.455 6.455 6 N -0.334 5.334 7 C -0.023 4.023 8 C -0.160 4.160 9 C -0.144 4.144 10 C 0.026 3.974 11 H 0.013 0.987 12 C -0.580 4.580 13 H 0.066 0.934 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.202 1.202 19 H -0.196 1.196 20 C 0.007 3.993 21 C -0.174 4.174 22 C -0.019 4.019 23 N -0.373 5.373 24 C 0.316 3.684 25 O -0.438 6.438 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.358 -11.212 -17.280 21.054 hybrid contribution -0.749 1.155 1.068 1.743 sum 3.608 -10.056 -16.212 19.416 Atomic orbital electron populations 1.21827 0.96437 1.02124 1.00992 1.21296 0.95857 0.90243 1.04602 1.21840 1.00695 0.98717 0.91125 1.20554 0.78072 0.81691 0.88536 1.90617 1.45540 1.66138 1.43183 1.48236 1.54341 1.07565 1.23215 1.22153 0.93765 0.96264 0.90142 1.21830 0.96834 0.98950 0.98425 1.21430 1.00186 0.97932 0.94847 1.18840 0.92104 0.93225 0.93194 0.98669 1.21400 0.94084 1.25902 1.16571 0.93419 1.25631 0.95089 0.97790 0.99313 1.69977 1.03170 1.40710 1.41006 0.85622 0.78452 0.78426 0.79548 1.20367 1.20245 1.19628 1.21582 0.97187 0.94064 0.86454 1.23119 0.89248 1.06549 0.98440 1.22449 0.86777 1.01068 0.91626 1.46182 1.12999 1.58030 1.20047 1.20346 0.84550 0.78150 0.85339 1.90764 1.21674 1.50595 1.80721 0.94913 0.93498 0.90734 0.87178 0.89956 0.86683 0.92633 0.88859 0.92222 0.95230 0.91198 0.92768 0.93280 0.92620 0.85412 0.89901 0.86233 0.86874 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 9.19 71.98 0.66 -3.77 16 2 C -0.08 -1.87 4.57 30.60 0.14 -1.73 16 3 C -0.12 -3.03 0.44 -52.92 -0.02 -3.05 16 4 C 0.52 20.04 5.97 87.66 0.52 20.56 16 5 O -0.57 -26.18 13.82 -3.04 -0.04 -26.22 16 6 N -0.60 -24.08 2.97 -819.74 -2.43 -26.51 16 7 C 0.10 3.17 4.41 86.22 0.38 3.55 16 8 C -0.12 -4.16 5.95 30.53 0.18 -3.97 16 9 C -0.11 -4.86 4.97 30.62 0.15 -4.71 16 10 C 0.05 2.36 2.25 -11.46 -0.03 2.34 16 11 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 12 C -0.54 -30.81 8.56 25.60 0.22 -30.59 16 13 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 14 C 0.02 1.19 5.30 84.66 0.45 1.63 16 15 N -0.91 -51.74 11.32 21.45 0.24 -51.50 16 16 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.13 6.20 5.67 86.36 0.49 6.69 16 21 C -0.14 -2.18 5.42 31.65 0.17 -2.01 16 22 C 0.10 0.81 7.35 86.83 0.64 1.45 16 23 N -0.72 -10.36 5.62 -459.73 -2.58 -12.95 16 24 C 0.53 13.75 4.28 87.92 0.38 14.13 16 25 O -0.56 -19.90 16.59 -3.03 -0.05 -19.95 16 26 H 0.03 1.19 6.06 -2.38 -0.01 1.18 16 27 H 0.05 1.37 6.77 -2.38 -0.02 1.35 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.92 7.96 -2.39 -0.02 1.90 16 31 H 0.12 2.81 2.47 -2.39 -0.01 2.80 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.06 2.03 7.75 -2.39 -0.02 2.01 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 3.60 6.05 -2.39 -0.01 3.59 16 37 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.88 7.00 -2.39 -0.02 2.87 16 40 H 0.13 1.42 7.90 -2.38 -0.02 1.40 16 41 H 0.08 1.64 5.62 -2.38 -0.01 1.62 16 42 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.43 4.45 8.96 -92.71 -0.83 3.61 16 Total: -1.00 -77.40 331.38 1.68 -75.72 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.18 Total: 14.68 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.33 Total: 0.53 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -4.77 Total: -90.96 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.09 Total: -46.16 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.40 1.68 -75.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869230296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.899 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds