Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27445 * 118.77971 * 2 1 4 4 N 1.39866 * 121.27923 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.04094 * 161.93284 * 4 3 2 6 6 C 1.50701 * 109.47418 * 91.13713 * 5 4 3 7 7 H 1.08001 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00467 * 179.73124 * 6 5 4 9 9 N 1.31513 * 120.00306 * 180.27661 * 8 6 5 10 10 Si 1.86800 * 119.99803 * 0.26906 * 8 6 5 11 11 H 1.48504 * 109.47118 * 90.00184 * 10 8 6 12 12 H 1.48500 * 109.47584 * 210.00288 * 10 8 6 13 13 H 1.48501 * 109.47163 * 330.00435 * 10 8 6 14 14 C 1.36579 * 119.92326 * 341.65064 * 4 3 2 15 15 C 1.50700 * 120.02715 * 197.59542 * 14 4 3 16 16 C 1.34892 * 119.94570 * 17.62225 * 14 4 3 17 17 C 1.41184 * 119.51525 * 180.45896 * 16 14 4 18 18 O 1.21721 * 120.00363 * 0.02562 * 17 16 14 19 19 O 1.34988 * 119.99516 * 180.02562 * 17 16 14 20 20 C 1.42906 * 116.99690 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46961 * 60.00024 * 20 19 17 22 22 C 1.52997 * 109.46836 * 180.02562 * 20 19 17 23 23 C 1.52998 * 109.46998 * 300.00094 * 20 19 17 24 24 C 1.50090 * 118.82430 * 179.73320 * 2 1 3 25 25 H 1.09000 * 109.46964 * 270.26554 * 1 2 3 26 26 H 1.09004 * 109.46526 * 30.26258 * 1 2 3 27 27 H 1.08997 * 109.46847 * 150.26479 * 1 2 3 28 28 H 1.09002 * 109.46987 * 331.14197 * 5 4 3 29 29 H 1.09004 * 109.47406 * 211.13812 * 5 4 3 30 30 H 0.97006 * 119.99817 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47131 * 0.20357 * 15 14 4 32 32 H 1.09005 * 109.46673 * 120.20065 * 15 14 4 33 33 H 1.08999 * 109.46992 * 240.20143 * 15 14 4 34 34 H 1.09004 * 109.47006 * 59.99967 * 21 20 19 35 35 H 1.09006 * 109.47061 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47379 * 299.99962 * 21 20 19 37 37 H 1.08998 * 109.47164 * 59.99977 * 22 20 19 38 38 H 1.09006 * 109.46979 * 180.02562 * 22 20 19 39 39 H 1.09005 * 109.46722 * 300.00005 * 22 20 19 40 40 H 1.08998 * 109.47143 * 60.00160 * 23 20 19 41 41 H 1.09006 * 109.46755 * 180.02562 * 23 20 19 42 42 H 1.09005 * 109.47119 * 299.99688 * 23 20 19 43 43 H 1.09006 * 109.18632 * 75.77952 * 24 2 1 44 44 H 1.08999 * 109.18595 * 316.53164 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1206 1.1170 0.0000 4 7 3.5180 1.1780 0.0005 5 6 4.1982 2.4144 -0.3928 6 6 4.4367 3.2665 0.8271 7 1 4.1135 2.9217 1.7982 8 6 5.0721 4.4840 0.7042 9 7 5.2851 5.2251 1.7696 10 14 5.6305 5.0807 -0.9755 11 1 4.5409 5.8657 -1.6094 12 1 6.8332 5.9380 -0.8217 13 1 5.9613 3.9127 -1.8309 14 6 4.2475 0.0853 0.3737 15 6 5.6960 0.2414 0.7590 16 6 3.6705 -1.1337 0.3965 17 6 4.4304 -2.2556 0.7931 18 8 5.5972 -2.1187 1.1116 19 8 3.8629 -3.4801 0.8190 20 6 4.6907 -4.5702 1.2298 21 6 5.1942 -4.3202 2.6528 22 6 3.8799 -5.8672 1.1955 23 6 5.8843 -4.6902 0.2802 24 6 2.2307 -1.3149 0.0061 25 1 -0.3633 0.0048 1.0277 26 1 -0.3632 0.8877 -0.5179 27 1 -0.3633 -0.8923 -0.5097 28 1 3.5768 2.9612 -1.1020 29 1 5.1533 2.1713 -0.8585 30 1 5.7324 6.0815 1.6831 31 1 5.9811 1.2907 0.6830 32 1 5.8380 -0.1003 1.7844 33 1 6.3164 -0.3533 0.0886 34 1 4.3437 -4.2347 3.3293 35 1 5.8252 -5.1519 2.9663 36 1 5.7718 -3.3962 2.6767 37 1 3.5216 -6.0451 0.1816 38 1 4.5112 -6.6987 1.5093 39 1 3.0293 -5.7819 1.8718 40 1 6.4619 -3.7662 0.3041 41 1 6.5154 -5.5219 0.5933 42 1 5.5256 -4.8683 -0.7336 43 1 2.1818 -1.7553 -0.9898 44 1 1.7488 -1.9857 0.7175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871942286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -33.719550 kcal Electronic energy + Delta-G solvation = -24757.001811 eV Core-core repulsion = 21289.646272 eV Total energy + Delta-G solvation = -3467.355540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76485 -39.34838 -36.77513 -35.10560 -33.81944 -33.03572 -32.28364 -29.51940 -28.89509 -27.39231 -27.32318 -26.59052 -25.25233 -23.46778 -21.60021 -20.83982 -19.22250 -17.13795 -17.03745 -16.83542 -15.99277 -15.78445 -15.23513 -15.14452 -14.81349 -14.25455 -14.06841 -13.61436 -13.46575 -13.04470 -12.99490 -12.74822 -12.51777 -12.47477 -12.37611 -12.15247 -12.05302 -11.90208 -11.85982 -11.78478 -11.69582 -11.24427 -11.06899 -10.97947 -10.83777 -10.48490 -10.16709 -10.05516 -9.80857 -9.71723 -9.32517 -9.08150 -8.77537 -6.97744 -6.25949 -4.28445 1.59947 2.62958 2.90191 3.15968 3.21918 3.25047 3.37149 3.54181 4.21877 4.75817 4.81548 4.83380 4.96033 5.00318 5.05050 5.19783 5.45898 5.50224 5.55115 5.62943 5.66852 5.69404 5.70982 5.76364 5.87652 5.90854 5.94222 5.99229 6.00812 6.17863 6.24044 6.27139 6.34249 6.36965 6.47149 6.50690 6.66421 6.75980 7.00150 7.11284 7.30866 7.55696 8.29443 8.48310 8.65008 8.79353 9.29966 10.86523 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.004536 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.038514 B = 6171.846436 C = 7125.229210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.087 3.913 3 N -0.243 5.243 4 N -0.405 5.405 5 C 0.234 3.766 6 C -0.540 4.540 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.273 3.727 15 C -0.120 4.120 16 C -0.365 4.365 17 C 0.530 3.470 18 O -0.536 6.536 19 O -0.351 6.351 20 C 0.119 3.881 21 C -0.184 4.184 22 C -0.138 4.138 23 C -0.183 4.183 24 C -0.028 4.028 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -18.167 -3.896 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 N -0.045 5.045 4 N -0.192 5.192 5 C 0.114 3.886 6 C -0.578 4.578 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.524 5.524 10 Si 0.698 3.302 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.189 1.189 14 C 0.155 3.845 15 C -0.177 4.177 16 C -0.376 4.376 17 C 0.383 3.617 18 O -0.431 6.431 19 O -0.269 6.269 20 C 0.082 3.918 21 C -0.241 4.241 22 C -0.195 4.195 23 C -0.240 4.240 24 C -0.068 4.068 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.932 -16.776 -3.804 17.646 hybrid contribution 0.582 -0.441 -0.520 0.896 sum -3.350 -17.217 -4.324 18.065 Atomic orbital electron populations 1.20601 0.87764 1.03399 1.03234 1.24864 0.97539 0.91334 0.96805 1.74010 0.92313 1.25051 1.13120 1.47910 0.99426 1.11794 1.60103 1.19949 0.91554 0.79763 0.97296 1.21254 1.39593 1.02914 0.94063 0.90196 1.24823 0.95017 0.96004 0.96698 1.69879 1.41428 1.12334 1.28734 0.86929 0.79078 0.79705 0.84520 1.19691 1.20600 1.18896 1.20649 0.94185 0.86170 0.83448 1.21332 0.88787 1.04353 1.03233 1.18171 0.98012 0.90858 1.30549 1.18792 0.85637 0.82263 0.74983 1.90751 1.17962 1.85675 1.48668 1.86225 1.44242 1.16351 1.80132 1.21546 0.90417 0.85423 0.94453 1.22527 1.02062 1.04319 0.95168 1.21826 1.00299 0.94508 1.02909 1.22522 0.98336 1.04279 0.98869 1.19059 0.91324 0.94519 1.01915 0.90384 0.90493 0.90376 0.93850 0.93658 0.92179 0.89208 0.88771 0.89511 0.92458 0.91895 0.89376 0.91793 0.90954 0.91774 0.89400 0.91908 0.92506 0.91134 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.16 36.01 0.37 -0.68 16 2 C 0.09 1.42 7.02 -79.43 -0.56 0.86 16 3 N -0.24 -4.94 11.23 35.09 0.39 -4.55 16 4 N -0.41 -8.84 3.50 -58.03 -0.20 -9.04 16 5 C 0.23 5.44 4.11 -5.20 -0.02 5.41 16 6 C -0.54 -14.65 8.90 -34.44 -0.31 -14.95 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 10 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 14 C 0.27 5.53 6.60 -81.67 -0.54 4.99 16 15 C -0.12 -2.32 7.86 36.01 0.28 -2.04 16 16 C -0.37 -6.69 5.78 -104.90 -0.61 -7.29 16 17 C 0.53 9.25 6.90 31.85 0.22 9.47 16 18 O -0.54 -9.77 8.30 -19.44 -0.16 -9.93 16 19 O -0.35 -5.38 9.06 -41.28 -0.37 -5.76 16 20 C 0.12 1.50 1.11 -90.62 -0.10 1.40 16 21 C -0.18 -2.31 8.36 37.16 0.31 -2.00 16 22 C -0.14 -1.33 8.84 37.16 0.33 -1.00 16 23 C -0.18 -2.24 8.35 37.16 0.31 -1.93 16 24 C -0.03 -0.44 5.36 -29.53 -0.16 -0.60 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.04 1.01 7.58 -51.93 -0.39 0.61 16 29 H 0.05 1.01 6.07 -51.93 -0.31 0.69 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.09 1.88 5.39 -51.93 -0.28 1.60 16 32 H 0.09 1.85 7.14 -51.93 -0.37 1.48 16 33 H 0.09 1.56 7.22 -51.93 -0.37 1.19 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.33 5.83 -51.93 -0.30 1.03 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.28 5.83 -51.93 -0.30 0.98 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -30.39 347.97 -6.56 -36.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.99 Total: 3.32 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.57 Total: -6.30 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.96 Total: -38.83 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.54 Total: -15.69 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.39 -6.56 -36.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871942286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.223 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds