Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27445 * 118.77971 * 2 1 4 4 N 1.39866 * 121.27923 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.04094 * 161.93284 * 4 3 2 6 6 C 1.50701 * 109.47418 * 91.13713 * 5 4 3 7 7 H 1.08001 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00467 * 179.73124 * 6 5 4 9 9 N 1.31513 * 120.00306 * 180.27661 * 8 6 5 10 10 Si 1.86800 * 119.99803 * 0.26906 * 8 6 5 11 11 H 1.48504 * 109.47118 * 90.00184 * 10 8 6 12 12 H 1.48500 * 109.47584 * 210.00288 * 10 8 6 13 13 H 1.48501 * 109.47163 * 330.00435 * 10 8 6 14 14 C 1.36579 * 119.92326 * 341.65064 * 4 3 2 15 15 C 1.50700 * 120.02715 * 197.59542 * 14 4 3 16 16 C 1.34892 * 119.94570 * 17.62225 * 14 4 3 17 17 C 1.41184 * 119.51525 * 180.45896 * 16 14 4 18 18 O 1.21721 * 120.00363 * 0.02562 * 17 16 14 19 19 O 1.34988 * 119.99516 * 180.02562 * 17 16 14 20 20 C 1.42906 * 116.99690 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.46961 * 60.00024 * 20 19 17 22 22 C 1.52997 * 109.46836 * 180.02562 * 20 19 17 23 23 C 1.52998 * 109.46998 * 300.00094 * 20 19 17 24 24 C 1.50090 * 118.82430 * 179.73320 * 2 1 3 25 25 H 1.09000 * 109.46964 * 270.26554 * 1 2 3 26 26 H 1.09004 * 109.46526 * 30.26258 * 1 2 3 27 27 H 1.08997 * 109.46847 * 150.26479 * 1 2 3 28 28 H 1.09002 * 109.46987 * 331.14197 * 5 4 3 29 29 H 1.09004 * 109.47406 * 211.13812 * 5 4 3 30 30 H 0.97006 * 119.99817 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47131 * 0.20357 * 15 14 4 32 32 H 1.09005 * 109.46673 * 120.20065 * 15 14 4 33 33 H 1.08999 * 109.46992 * 240.20143 * 15 14 4 34 34 H 1.09004 * 109.47006 * 59.99967 * 21 20 19 35 35 H 1.09006 * 109.47061 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47379 * 299.99962 * 21 20 19 37 37 H 1.08998 * 109.47164 * 59.99977 * 22 20 19 38 38 H 1.09006 * 109.46979 * 180.02562 * 22 20 19 39 39 H 1.09005 * 109.46722 * 300.00005 * 22 20 19 40 40 H 1.08998 * 109.47143 * 60.00160 * 23 20 19 41 41 H 1.09006 * 109.46755 * 180.02562 * 23 20 19 42 42 H 1.09005 * 109.47119 * 299.99688 * 23 20 19 43 43 H 1.09006 * 109.18632 * 75.77952 * 24 2 1 44 44 H 1.08999 * 109.18595 * 316.53164 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1206 1.1170 0.0000 4 7 3.5180 1.1780 0.0005 5 6 4.1982 2.4144 -0.3928 6 6 4.4367 3.2665 0.8271 7 1 4.1135 2.9217 1.7982 8 6 5.0721 4.4840 0.7042 9 7 5.2851 5.2251 1.7696 10 14 5.6305 5.0807 -0.9755 11 1 4.5409 5.8657 -1.6094 12 1 6.8332 5.9380 -0.8217 13 1 5.9613 3.9127 -1.8309 14 6 4.2475 0.0853 0.3737 15 6 5.6960 0.2414 0.7590 16 6 3.6705 -1.1337 0.3965 17 6 4.4304 -2.2556 0.7931 18 8 5.5972 -2.1187 1.1116 19 8 3.8629 -3.4801 0.8190 20 6 4.6907 -4.5702 1.2298 21 6 5.1942 -4.3202 2.6528 22 6 3.8799 -5.8672 1.1955 23 6 5.8843 -4.6902 0.2802 24 6 2.2307 -1.3149 0.0061 25 1 -0.3633 0.0048 1.0277 26 1 -0.3632 0.8877 -0.5179 27 1 -0.3633 -0.8923 -0.5097 28 1 3.5768 2.9612 -1.1020 29 1 5.1533 2.1713 -0.8585 30 1 5.7324 6.0815 1.6831 31 1 5.9811 1.2907 0.6830 32 1 5.8380 -0.1003 1.7844 33 1 6.3164 -0.3533 0.0886 34 1 4.3437 -4.2347 3.3293 35 1 5.8252 -5.1519 2.9663 36 1 5.7718 -3.3962 2.6767 37 1 3.5216 -6.0451 0.1816 38 1 4.5112 -6.6987 1.5093 39 1 3.0293 -5.7819 1.8718 40 1 6.4619 -3.7662 0.3041 41 1 6.5154 -5.5219 0.5933 42 1 5.5256 -4.8683 -0.7336 43 1 2.1818 -1.7553 -0.9898 44 1 1.7488 -1.9857 0.7175 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871942286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -51.269097 kcal Electronic energy + Delta-G solvation = -24757.762817 eV Core-core repulsion = 21289.646272 eV Total energy + Delta-G solvation = -3468.116545 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07729 -40.70519 -38.03778 -36.60512 -34.98702 -34.81139 -33.87246 -31.01044 -30.41382 -28.30763 -28.24555 -28.11719 -26.54534 -25.15026 -23.16917 -22.14849 -20.43397 -19.19310 -18.45836 -18.15245 -17.21616 -17.08740 -16.78726 -16.53629 -16.16789 -15.81843 -15.20488 -15.02494 -14.58439 -14.46768 -14.40634 -14.24712 -14.12817 -13.62732 -13.57554 -13.41010 -13.14841 -13.06546 -12.98498 -12.88064 -12.74597 -12.65534 -12.58404 -12.34548 -12.05305 -12.02011 -11.87986 -11.72722 -11.18217 -11.15635 -10.87770 -10.86608 -10.42819 -8.46619 -8.36874 -6.46244 0.17117 1.28916 1.32897 1.35722 1.43736 1.51063 2.14187 2.16806 2.27467 2.94877 3.55680 3.60290 3.86739 3.88071 3.90397 4.06047 4.28016 4.32919 4.51091 4.54359 4.61974 4.65470 4.66780 4.68798 4.71324 4.80562 4.82582 4.87812 4.88790 4.92315 4.95256 5.02808 5.10140 5.14511 5.21606 5.29797 5.34781 5.35477 5.44234 5.63374 5.78793 5.89911 6.27273 6.56066 7.15205 7.16656 7.25324 8.78994 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.004536 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.038514 B = 6171.846436 C = 7125.229210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.106 3.894 3 N -0.295 5.295 4 N -0.426 5.426 5 C 0.246 3.754 6 C -0.540 4.540 7 H 0.025 0.975 8 C 0.021 3.979 9 N -0.939 5.939 10 Si 0.945 3.055 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.240 1.240 14 C 0.244 3.756 15 C -0.106 4.106 16 C -0.361 4.361 17 C 0.529 3.471 18 O -0.547 6.547 19 O -0.349 6.349 20 C 0.106 3.894 21 C -0.182 4.182 22 C -0.132 4.132 23 C -0.180 4.180 24 C -0.031 4.031 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.271 0.729 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 -21.010 -5.808 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 N -0.098 5.098 4 N -0.213 5.213 5 C 0.125 3.875 6 C -0.579 4.579 7 H 0.044 0.956 8 C -0.179 4.179 9 N -0.578 5.578 10 Si 0.767 3.233 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.163 1.163 14 C 0.128 3.872 15 C -0.163 4.163 16 C -0.372 4.372 17 C 0.381 3.619 18 O -0.442 6.442 19 O -0.267 6.267 20 C 0.070 3.930 21 C -0.239 4.239 22 C -0.189 4.189 23 C -0.237 4.237 24 C -0.071 4.071 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.131 -19.667 -5.715 21.114 hybrid contribution 0.866 0.210 0.214 0.916 sum -4.265 -19.457 -5.501 20.665 Atomic orbital electron populations 1.20821 0.84099 1.05319 1.04579 1.25726 0.99634 0.90686 0.92548 1.74041 0.91433 1.27249 1.17059 1.47647 1.00402 1.11398 1.61895 1.19621 0.92325 0.80275 0.95258 1.21340 1.39205 1.03805 0.93502 0.95645 1.25791 0.94872 0.95931 1.01281 1.70041 1.42982 1.13108 1.31681 0.85761 0.78671 0.79809 0.79075 1.18779 1.20234 1.16320 1.20778 0.94352 0.86851 0.85197 1.21152 0.89472 1.02836 1.02871 1.18558 0.99581 0.90341 1.28725 1.18763 0.85349 0.82987 0.74754 1.90759 1.18587 1.86133 1.48732 1.86203 1.44621 1.16005 1.79830 1.21964 0.91057 0.85754 0.94249 1.22494 1.02076 1.03787 0.95526 1.21837 1.00400 0.93046 1.03614 1.22478 0.98226 1.03745 0.99247 1.19250 0.89517 0.94609 1.03697 0.89074 0.90489 0.86549 0.93542 0.92585 0.91957 0.91435 0.89909 0.88423 0.92396 0.89451 0.92444 0.91118 0.88581 0.91390 0.92247 0.89553 0.91988 0.88797 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 10.16 71.24 0.72 -1.05 16 2 C 0.11 3.27 7.02 46.42 0.33 3.59 16 3 N -0.30 -12.05 11.23 -41.94 -0.47 -12.52 16 4 N -0.43 -19.02 3.50 -337.49 -1.18 -20.20 16 5 C 0.25 11.71 4.11 85.63 0.35 12.06 16 6 C -0.54 -30.83 8.90 25.60 0.23 -30.60 16 7 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 8 C 0.02 1.16 5.47 84.65 0.46 1.63 16 9 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 10 Si 0.95 41.65 27.47 68.60 1.88 43.54 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 14 C 0.24 10.10 6.60 41.05 0.27 10.38 16 15 C -0.11 -4.31 7.86 71.24 0.56 -3.75 16 16 C -0.36 -12.99 5.78 -20.04 -0.12 -13.10 16 17 C 0.53 18.09 6.90 68.54 0.47 18.56 16 18 O -0.55 -20.17 8.30 19.11 0.16 -20.01 16 19 O -0.35 -9.97 9.06 -59.06 -0.54 -10.50 16 20 C 0.11 2.44 1.11 -10.79 -0.01 2.43 16 21 C -0.18 -4.30 8.36 71.98 0.60 -3.70 16 22 C -0.13 -2.04 8.84 71.98 0.64 -1.40 16 23 C -0.18 -4.04 8.35 71.98 0.60 -3.44 16 24 C -0.03 -0.89 5.36 28.78 0.15 -0.74 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.12 1.45 8.10 -2.39 -0.02 1.43 16 28 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 29 H 0.06 2.51 6.07 -2.39 -0.01 2.50 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 31 H 0.07 3.00 5.39 -2.39 -0.01 2.99 16 32 H 0.08 3.48 7.14 -2.38 -0.02 3.46 16 33 H 0.10 3.64 7.22 -2.39 -0.02 3.62 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.73 5.83 -2.39 -0.01 1.72 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.05 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 40 H 0.06 1.69 5.83 -2.39 -0.01 1.68 16 41 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.10 2.44 7.95 -2.39 -0.02 2.43 16 Total: -1.00 -70.70 347.97 6.35 -64.36 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.93 Total: 21.78 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.26 Total: -9.14 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.35 Total: -90.02 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.38 Total: -30.51 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -70.70 6.35 -64.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871942286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds