Wall clock time and date at job start Tue Mar 31 2020 07:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47111 * 2 1 4 4 C 1.50701 * 109.47271 * 239.99555 * 2 1 3 5 5 H 1.07998 * 119.99961 * 240.00192 * 4 2 1 6 6 C 1.37885 * 119.99642 * 60.00086 * 4 2 1 7 7 N 1.31509 * 120.00042 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46993 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47115 * 120.00189 * 8 6 4 11 11 H 1.48497 * 109.46807 * 239.99931 * 8 6 4 12 12 C 1.53009 * 109.47060 * 119.99887 * 2 1 3 13 13 N 1.46500 * 109.46740 * 299.99731 * 12 2 1 14 14 C 1.34777 * 119.99511 * 179.97438 * 13 12 2 15 15 O 1.21346 * 120.00454 * 0.02562 * 14 13 12 16 16 C 1.49456 * 119.99647 * 180.02562 * 14 13 12 17 17 O 1.21350 * 120.00245 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99646 * 180.02562 * 16 14 13 19 19 C 1.46504 * 119.99780 * 180.02562 * 18 16 14 20 20 H 1.09002 * 115.55999 * 350.72467 * 19 18 16 21 21 C 1.53119 * 117.51272 * 136.53333 * 19 18 16 22 22 C 1.52462 * 59.85873 * 107.44724 * 21 19 18 23 23 C 1.53256 * 128.58268 * 242.40327 * 22 21 19 24 24 C 1.53889 * 86.98099 * 245.00445 * 23 22 21 25 25 C 1.53249 * 128.58891 * 117.59670 * 22 21 19 26 26 H 1.09004 * 109.47347 * 300.00338 * 1 2 3 27 27 H 1.09000 * 109.46862 * 60.00159 * 1 2 3 28 28 H 1.09006 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47062 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47128 * 299.99678 * 3 2 1 31 31 H 1.08996 * 109.47557 * 59.99790 * 3 2 1 32 32 H 0.96997 * 120.00352 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.46946 * 179.97438 * 12 2 1 34 34 H 1.08994 * 109.46963 * 60.00063 * 12 2 1 35 35 H 0.96994 * 120.00463 * 0.02562 * 13 12 2 36 36 H 0.96998 * 120.00428 * 359.97438 * 18 16 14 37 37 H 1.09000 * 117.51851 * 359.97438 * 21 19 18 38 38 H 1.09007 * 117.51154 * 214.89432 * 21 19 18 39 39 H 1.09002 * 113.64750 * 359.54743 * 23 22 21 40 40 H 1.08999 * 113.64710 * 130.46206 * 23 22 21 41 41 H 1.09001 * 113.58643 * 89.64964 * 24 23 22 42 42 H 1.08993 * 113.59137 * 220.47432 * 24 23 22 43 43 H 1.09004 * 113.64908 * 229.44493 * 25 22 21 44 44 H 1.09004 * 113.64569 * 0.36484 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1464 -2.2872 -3.6036 10 1 1.1660 -1.5869 -4.8160 11 1 3.1466 -0.1876 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5744 -1.4779 3.7810 16 6 1.3782 0.2130 4.8898 17 8 0.6802 1.1994 4.7784 18 7 1.7038 -0.2474 6.1139 19 6 1.2146 0.4426 7.3101 20 1 0.7290 1.4025 7.1338 21 6 0.6809 -0.4210 8.4563 22 6 2.0238 0.2879 8.5929 23 6 3.4152 -0.3277 8.7769 24 6 3.4394 0.3426 10.1619 25 6 2.4366 1.3679 9.5987 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7087 1.1611 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 0.9938 0.7579 2.3564 36 1 2.2614 -1.0361 6.2030 37 1 0.6935 -1.5024 8.3202 38 1 -0.1562 -0.0294 9.0343 39 1 3.4094 -1.4169 8.8183 40 1 4.1621 0.0660 8.0875 41 1 3.0268 -0.2806 10.9553 42 1 4.4063 0.7737 10.4210 43 1 2.9115 2.2348 9.1391 44 1 1.6458 1.6392 10.2981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875405587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:53 Heat of formation + Delta-G solvation = -46.823033 kcal Electronic energy + Delta-G solvation = -23488.472155 eV Core-core repulsion = 20020.548406 eV Total energy + Delta-G solvation = -3467.923749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81666 -40.55904 -39.45415 -38.21279 -36.14075 -35.02919 -32.99061 -32.74725 -28.04410 -27.59692 -27.25236 -26.61476 -25.31430 -23.94371 -22.63386 -21.55197 -20.73562 -19.91563 -19.07107 -18.13809 -17.75826 -17.04559 -16.96118 -16.62974 -16.32343 -16.10445 -15.60539 -15.50819 -15.12735 -14.77654 -14.41020 -14.06968 -13.81924 -13.41984 -13.23907 -13.22449 -13.14488 -12.79090 -12.71808 -12.56363 -12.47604 -12.34605 -12.28977 -12.12330 -11.78494 -11.51838 -11.31755 -11.20672 -10.92334 -10.76154 -10.63598 -10.42195 -10.15825 -9.78188 -8.02114 -6.18606 0.28608 1.26077 1.43058 1.47389 1.56631 2.06355 2.44293 2.62186 2.78012 3.21891 3.38432 3.52600 3.65097 3.71595 3.90855 3.93264 4.33202 4.46045 4.49735 4.53939 4.66772 4.82788 4.83876 4.86051 4.88147 4.91271 5.02935 5.04595 5.09295 5.11467 5.16173 5.19593 5.25219 5.36571 5.47032 5.50473 5.63829 5.67295 5.92012 6.10312 6.18047 6.35607 6.40627 6.70280 6.85584 6.93182 7.49516 8.97441 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.002670 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892250 B =10486.314395 C =10719.749292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.050 3.950 3 C -0.125 4.125 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.499 3.501 15 O -0.550 6.550 16 C 0.517 3.483 17 O -0.541 6.541 18 N -0.658 5.658 19 C 0.063 3.937 20 H 0.129 0.871 21 C -0.140 4.140 22 C -0.162 4.162 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.098 4.098 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.419 0.581 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.548 -0.318 24.205 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.279 3.721 15 O -0.430 6.430 16 C 0.298 3.702 17 O -0.418 6.418 18 N -0.309 5.309 19 C -0.042 4.042 20 H 0.147 0.853 21 C -0.178 4.178 22 C -0.163 4.163 23 C -0.145 4.145 24 C -0.165 4.165 25 C -0.135 4.135 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.256 0.744 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.470 -0.200 24.026 24.072 hybrid contribution 0.223 -0.394 -1.355 1.429 sum 1.693 -0.594 22.671 22.742 Atomic orbital electron populations 1.21718 0.97360 0.98950 1.00232 1.18382 0.93143 0.92992 0.90502 1.21715 0.98265 0.98051 1.00228 1.21270 1.31702 1.12238 0.91125 0.93013 1.25506 0.95122 0.95582 1.01190 1.69929 1.37045 1.23458 1.23597 0.85646 0.78045 0.78721 0.80018 1.19618 1.20894 1.20904 1.21568 0.97975 0.95523 0.82938 1.46068 1.50694 1.31445 1.04981 1.20260 0.81714 0.84873 0.85209 1.90713 1.38525 1.26656 1.87062 1.20006 0.80922 0.84322 0.84980 1.90742 1.37804 1.26348 1.86921 1.45003 1.51086 1.31271 1.03510 1.21799 1.04086 0.98642 0.79658 0.85333 1.23459 0.95886 0.99597 0.98904 1.23033 0.94075 1.02243 0.96929 1.22513 0.93395 1.00541 0.98090 1.22751 0.99792 0.97918 0.96083 1.22554 0.99180 0.95751 0.96055 0.95177 0.91754 0.95699 0.95710 0.91759 0.95179 0.93043 0.92654 0.92642 0.74880 0.74410 0.87395 0.85953 0.90667 0.90156 0.89058 0.90482 0.89805 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.08 71.98 0.58 -5.12 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.71 8.08 71.98 0.58 -5.13 16 4 C -0.52 -27.34 8.01 25.60 0.21 -27.14 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.35 5.15 84.66 0.44 1.78 16 7 N -0.90 -48.45 9.35 21.45 0.20 -48.25 16 8 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.14 5.95 4.50 86.38 0.39 6.34 16 13 N -0.68 -24.97 4.95 -464.41 -2.30 -27.27 16 14 C 0.50 17.28 7.89 87.27 0.69 17.97 16 15 O -0.55 -20.72 16.48 -3.24 -0.05 -20.77 16 16 C 0.52 15.68 7.89 87.27 0.69 16.36 16 17 O -0.54 -18.52 16.04 -3.25 -0.05 -18.57 16 18 N -0.66 -15.37 5.54 -444.50 -2.46 -17.83 16 19 C 0.06 1.21 6.43 44.85 0.29 1.50 16 20 H 0.13 2.80 7.40 -2.39 -0.02 2.78 16 21 C -0.14 -1.89 10.46 30.46 0.32 -1.57 16 22 C -0.16 -2.29 3.01 -52.37 -0.16 -2.45 16 23 C -0.11 -1.40 8.07 30.98 0.25 -1.15 16 24 C -0.13 -1.29 8.10 31.26 0.25 -1.04 16 25 C -0.10 -1.13 8.10 31.04 0.25 -0.88 16 26 H 0.03 1.20 6.86 -2.38 -0.02 1.19 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 28 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 31 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 32 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 14.85 5.63 -92.71 -0.52 14.33 16 36 H 0.42 8.88 8.30 -92.71 -0.77 8.11 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -59.07 358.45 1.83 -57.24 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.28 Total: 29.34 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.75 Total: 1.80 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.56 Total: -93.35 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.11 Total: -39.35 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -59.07 1.83 -57.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875405587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.417 kcal (2) G-P(sol) polarization free energy of solvation -59.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds