Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21352 * 120.00060 * 0.02562 * 14 13 12 16 16 C 1.49447 * 120.00089 * 179.97438 * 14 13 12 17 17 O 1.21352 * 119.99852 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00446 * 179.97438 * 16 14 13 19 19 C 1.46494 * 120.00186 * 180.02562 * 18 16 14 20 20 H 1.08999 * 115.56177 * 9.26415 * 19 18 16 21 21 C 1.53127 * 117.51157 * 223.46244 * 19 18 16 22 22 C 1.52461 * 59.85565 * 252.54916 * 21 19 18 23 23 C 1.53260 * 128.57865 * 117.60027 * 22 21 19 24 24 C 1.53892 * 86.87830 * 114.94476 * 23 22 21 25 25 C 1.53253 * 128.58712 * 242.39670 * 22 21 19 26 26 H 1.09001 * 109.46690 * 300.00008 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 0.96999 * 119.99564 * 0.02562 * 18 16 14 37 37 H 1.08994 * 117.51540 * 0.02562 * 21 19 18 38 38 H 1.09008 * 117.50991 * 145.10503 * 21 19 18 39 39 H 1.09003 * 113.64223 * 229.43709 * 23 22 21 40 40 H 1.08996 * 113.64940 * 0.44418 * 23 22 21 41 41 H 1.08998 * 113.58522 * 270.38740 * 24 23 22 42 42 H 1.09004 * 113.58359 * 139.57559 * 24 23 22 43 43 H 1.09008 * 113.64617 * 359.55663 * 25 22 21 44 44 H 1.08995 * 113.64806 * 130.47228 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5751 -1.4773 -3.7810 16 6 1.3789 0.2136 -4.8898 17 8 0.6809 1.2001 -4.7784 18 7 1.7052 -0.2461 -6.1140 19 6 1.2169 0.4446 -7.3100 20 1 0.7311 1.4043 -7.1335 21 6 0.6840 -0.4184 -8.4572 22 6 2.0269 0.2906 -8.5924 23 6 3.4185 -0.3250 -8.7758 24 6 3.4406 0.3461 -10.1605 25 6 2.4404 1.3712 -9.5974 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 2.2634 -1.0344 -6.2030 37 1 0.6965 -1.4998 -8.3216 38 1 -0.1528 -0.0265 -9.0355 39 1 4.1653 0.0696 -8.0868 40 1 3.4127 -1.4141 -8.8178 41 1 3.0269 -0.2767 -10.9536 42 1 4.4072 0.7774 -10.4207 43 1 1.6505 1.6417 -10.2982 44 1 2.9136 2.2384 -9.1369 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875405588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -29.725639 kcal Electronic energy + Delta-G solvation = -23488.509663 eV Core-core repulsion = 20021.327312 eV Total energy + Delta-G solvation = -3467.182351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63083 -39.64490 -38.18118 -36.49212 -35.20005 -33.37770 -32.06619 -30.89803 -26.49215 -26.04602 -25.73049 -25.31824 -23.92045 -23.39439 -21.65099 -20.27000 -19.10150 -18.77102 -18.07078 -16.87852 -16.11477 -15.70394 -15.62556 -15.58042 -15.25589 -14.76565 -14.48636 -14.08605 -13.65903 -13.07060 -12.93239 -12.85264 -12.68228 -12.57034 -12.22452 -11.91346 -11.77807 -11.47072 -11.42300 -11.18598 -11.01146 -10.88071 -10.71113 -10.65151 -10.39975 -10.23184 -10.21370 -9.65043 -9.56035 -9.24605 -8.91351 -8.80441 -8.61572 -8.37762 -6.03349 -4.13470 1.60128 2.46574 3.27977 3.28277 3.34958 3.37980 3.58705 3.80553 4.18533 4.29053 4.38545 4.42905 4.46443 4.51520 4.77307 5.02156 5.23718 5.31431 5.36832 5.41280 5.43095 5.56386 5.58703 5.66384 5.93713 6.02392 6.10245 6.20259 6.22683 6.46133 6.61881 6.81732 6.84434 6.92873 6.99442 7.09417 7.32769 7.55009 7.66022 7.70865 7.95084 7.98372 8.11483 8.30615 8.39873 8.86574 9.52253 10.98636 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039978 B = 0.002672 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.220526 B =10478.297015 C =10713.464294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.287 1.287 12 C 0.128 3.872 13 N -0.679 5.679 14 C 0.497 3.503 15 O -0.535 6.535 16 C 0.512 3.488 17 O -0.519 6.519 18 N -0.676 5.676 19 C 0.093 3.907 20 H 0.141 0.859 21 C -0.157 4.157 22 C -0.169 4.169 23 C -0.102 4.102 24 C -0.136 4.136 25 C -0.097 4.097 26 H 0.087 0.913 27 H 0.008 0.992 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.008 0.992 31 H 0.084 0.916 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.413 0.587 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 0.110 -22.274 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.213 1.213 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.276 3.724 15 O -0.414 6.414 16 C 0.294 3.706 17 O -0.393 6.393 18 N -0.327 5.327 19 C -0.013 4.013 20 H 0.158 0.842 21 C -0.196 4.196 22 C -0.170 4.170 23 C -0.140 4.140 24 C -0.173 4.173 25 C -0.135 4.135 26 H 0.105 0.895 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.249 0.751 36 H 0.250 0.750 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.272 0.244 -22.046 22.084 hybrid contribution 0.314 -0.487 0.840 1.020 sum 1.586 -0.243 -21.206 21.267 Atomic orbital electron populations 1.21867 0.97610 0.99290 1.00354 1.18380 0.92953 0.92861 0.90265 1.21845 0.99425 0.98392 0.99329 1.20933 1.33192 1.10794 0.89797 0.92356 1.24885 0.94729 0.94982 0.98864 1.69824 1.35951 1.23110 1.23352 0.86569 0.78900 0.79888 0.82389 1.20626 1.19967 1.21300 1.21949 0.98588 0.96040 0.82825 1.46230 1.50334 1.31396 1.05122 1.19902 0.82427 0.85222 0.84869 1.90726 1.37952 1.25939 1.86749 1.20497 0.80751 0.84584 0.84812 1.90747 1.36455 1.25408 1.86737 1.45052 1.52183 1.31618 1.03886 1.21621 1.01572 0.98289 0.79769 0.84194 1.23383 0.95454 0.99547 1.01198 1.22886 0.93632 1.01666 0.98824 1.22454 0.94088 1.00116 0.97315 1.22729 0.99561 0.98351 0.96658 1.22462 0.98720 0.95976 0.96302 0.89477 0.97278 0.95328 0.95089 0.97294 0.89717 0.92929 0.91946 0.91963 0.75143 0.75045 0.88023 0.87566 0.89403 0.91174 0.90049 0.91185 0.91152 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.10 37.16 0.30 -2.75 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.03 8.04 37.16 0.30 -2.73 16 4 C -0.51 -13.19 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.14 -17.82 -0.09 1.67 16 7 N -0.88 -23.62 9.43 55.43 0.52 -23.09 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.13 2.67 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.66 4.90 -60.72 -0.30 -12.96 16 14 C 0.50 8.76 7.89 -11.59 -0.09 8.66 16 15 O -0.54 -10.26 16.48 5.50 0.09 -10.17 16 16 C 0.51 7.95 7.89 -11.59 -0.09 7.86 16 17 O -0.52 -9.02 16.04 5.50 0.09 -8.94 16 18 N -0.68 -8.26 5.54 -54.45 -0.30 -8.57 16 19 C 0.09 0.96 6.43 -68.14 -0.44 0.52 16 20 H 0.14 1.57 7.40 -51.93 -0.38 1.18 16 21 C -0.16 -1.25 10.46 -26.94 -0.28 -1.53 16 22 C -0.17 -1.37 3.01 -154.80 -0.47 -1.84 16 23 C -0.10 -0.77 8.08 -26.13 -0.21 -0.98 16 24 C -0.14 -0.86 8.08 -25.81 -0.21 -1.06 16 25 C -0.10 -0.67 8.10 -26.14 -0.21 -0.88 16 26 H 0.09 2.19 6.12 -51.93 -0.32 1.88 16 27 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.17 6.71 -51.93 -0.35 -0.18 16 31 H 0.08 2.12 6.22 -51.93 -0.32 1.80 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.41 7.54 5.63 -40.82 -0.23 7.31 16 36 H 0.41 4.65 8.30 -40.82 -0.34 4.32 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -28.11 358.48 -8.29 -36.40 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.91 Total: 8.98 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.87 Total: -2.65 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.08 Total: -44.61 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.11 -8.29 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875405588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.675 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds