Wall clock time and date at job start Tue Mar 31 2020 07:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21352 * 120.00060 * 0.02562 * 14 13 12 16 16 C 1.49447 * 120.00089 * 179.97438 * 14 13 12 17 17 O 1.21352 * 119.99852 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00446 * 179.97438 * 16 14 13 19 19 C 1.46494 * 120.00186 * 180.02562 * 18 16 14 20 20 H 1.08999 * 115.56177 * 9.26415 * 19 18 16 21 21 C 1.53127 * 117.51157 * 223.46244 * 19 18 16 22 22 C 1.52461 * 59.85565 * 252.54916 * 21 19 18 23 23 C 1.53260 * 128.57865 * 117.60027 * 22 21 19 24 24 C 1.53892 * 86.87830 * 114.94476 * 23 22 21 25 25 C 1.53253 * 128.58712 * 242.39670 * 22 21 19 26 26 H 1.09001 * 109.46690 * 300.00008 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 0.96999 * 119.99564 * 0.02562 * 18 16 14 37 37 H 1.08994 * 117.51540 * 0.02562 * 21 19 18 38 38 H 1.09008 * 117.50991 * 145.10503 * 21 19 18 39 39 H 1.09003 * 113.64223 * 229.43709 * 23 22 21 40 40 H 1.08996 * 113.64940 * 0.44418 * 23 22 21 41 41 H 1.08998 * 113.58522 * 270.38740 * 24 23 22 42 42 H 1.09004 * 113.58359 * 139.57559 * 24 23 22 43 43 H 1.09008 * 113.64617 * 359.55663 * 25 22 21 44 44 H 1.08995 * 113.64806 * 130.47228 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5751 -1.4773 -3.7810 16 6 1.3789 0.2136 -4.8898 17 8 0.6809 1.2001 -4.7784 18 7 1.7052 -0.2461 -6.1140 19 6 1.2169 0.4446 -7.3100 20 1 0.7311 1.4043 -7.1335 21 6 0.6840 -0.4184 -8.4572 22 6 2.0269 0.2906 -8.5924 23 6 3.4185 -0.3250 -8.7758 24 6 3.4406 0.3461 -10.1605 25 6 2.4404 1.3712 -9.5974 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 2.2634 -1.0344 -6.2030 37 1 0.6965 -1.4998 -8.3216 38 1 -0.1528 -0.0265 -9.0355 39 1 4.1653 0.0696 -8.0868 40 1 3.4127 -1.4141 -8.8178 41 1 3.0269 -0.2767 -10.9536 42 1 4.4072 0.7774 -10.4207 43 1 1.6505 1.6417 -10.2982 44 1 2.9136 2.2384 -9.1369 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875405588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:56 Heat of formation + Delta-G solvation = -46.525133 kcal Electronic energy + Delta-G solvation = -23489.238143 eV Core-core repulsion = 20021.327312 eV Total energy + Delta-G solvation = -3467.910831 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81777 -40.56547 -39.45685 -38.21124 -36.14446 -35.02505 -32.99158 -32.74738 -28.04573 -27.60002 -27.24770 -26.61872 -25.31478 -23.94008 -22.63342 -21.55285 -20.73315 -19.91608 -19.07211 -18.13681 -17.75527 -17.04454 -16.96068 -16.62749 -16.32242 -16.10710 -15.60577 -15.50561 -15.13245 -14.76475 -14.40783 -14.06894 -13.81752 -13.42076 -13.24493 -13.24063 -13.12931 -12.78922 -12.70629 -12.59640 -12.47722 -12.34437 -12.27625 -12.13396 -11.78057 -11.51263 -11.31763 -11.20870 -10.92413 -10.76364 -10.63827 -10.42235 -10.15525 -9.78072 -8.02280 -6.18131 0.28612 1.26078 1.44740 1.47326 1.54935 2.06387 2.44412 2.62184 2.78052 3.22084 3.38453 3.52654 3.65026 3.71642 3.90754 3.93721 4.33210 4.46165 4.49731 4.53984 4.66954 4.82833 4.83872 4.86066 4.88247 4.91567 5.02693 5.04195 5.09332 5.11482 5.15698 5.19375 5.25280 5.36633 5.47078 5.50552 5.64065 5.67655 5.92008 6.09365 6.17566 6.35531 6.40046 6.70307 6.85700 6.93218 7.49723 8.97579 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039978 B = 0.002672 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.220526 B =10478.297015 C =10713.464294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.286 1.286 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.499 3.501 15 O -0.550 6.550 16 C 0.517 3.483 17 O -0.541 6.541 18 N -0.658 5.658 19 C 0.063 3.937 20 H 0.129 0.871 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.108 4.108 24 C -0.128 4.128 25 C -0.098 4.098 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.419 0.581 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -0.291 -24.231 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.211 1.211 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.280 3.720 15 O -0.430 6.430 16 C 0.298 3.702 17 O -0.418 6.418 18 N -0.309 5.309 19 C -0.042 4.042 20 H 0.147 0.853 21 C -0.179 4.179 22 C -0.163 4.163 23 C -0.145 4.145 24 C -0.165 4.165 25 C -0.135 4.135 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.256 0.744 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.477 -0.169 -24.050 24.096 hybrid contribution 0.271 -0.378 1.357 1.435 sum 1.748 -0.547 -22.692 22.766 Atomic orbital electron populations 1.21719 0.97369 0.98931 1.00171 1.18377 0.93125 0.92985 0.90507 1.21697 0.98684 0.98134 0.99510 1.21232 1.33282 1.10892 0.91167 0.93000 1.25506 0.95081 0.95594 1.01162 1.69941 1.36510 1.23854 1.23687 0.85718 0.78221 0.79004 0.79523 1.20430 1.19793 1.21133 1.21563 0.97998 0.95511 0.82930 1.46076 1.50680 1.31465 1.04987 1.20256 0.81714 0.84875 0.85205 1.90715 1.38530 1.26643 1.87065 1.20004 0.80926 0.84321 0.84980 1.90743 1.37813 1.26339 1.86922 1.45000 1.51060 1.31295 1.03510 1.21797 1.04098 0.98634 0.79659 0.85334 1.23459 0.95888 0.99600 0.98904 1.23042 0.94068 1.02236 0.96936 1.22519 0.93395 1.00541 0.98089 1.22719 0.99815 0.97914 0.96095 1.22520 0.99211 0.95753 0.96062 0.91834 0.95179 0.95702 0.95753 0.95111 0.91948 0.93052 0.92622 0.92636 0.74869 0.74410 0.87396 0.85957 0.90139 0.90652 0.89054 0.90500 0.90050 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.10 71.98 0.58 -5.09 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.60 8.04 71.98 0.58 -5.02 16 4 C -0.53 -27.48 8.01 25.60 0.21 -27.28 16 5 H 0.05 2.71 7.75 -2.91 -0.02 2.68 16 6 C 0.03 1.39 5.14 84.66 0.44 1.82 16 7 N -0.90 -48.51 9.43 21.45 0.20 -48.31 16 8 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.14 5.95 4.50 86.38 0.39 6.33 16 13 N -0.68 -24.94 4.90 -464.40 -2.27 -27.22 16 14 C 0.50 17.26 7.89 87.27 0.69 17.95 16 15 O -0.55 -20.70 16.48 -3.25 -0.05 -20.75 16 16 C 0.52 15.66 7.89 87.27 0.69 16.35 16 17 O -0.54 -18.50 16.04 -3.25 -0.05 -18.55 16 18 N -0.66 -15.35 5.54 -444.53 -2.46 -17.81 16 19 C 0.06 1.21 6.43 44.86 0.29 1.49 16 20 H 0.13 2.79 7.40 -2.39 -0.02 2.78 16 21 C -0.14 -1.89 10.46 30.46 0.32 -1.57 16 22 C -0.16 -2.29 3.01 -52.37 -0.16 -2.44 16 23 C -0.11 -1.40 8.08 30.98 0.25 -1.15 16 24 C -0.13 -1.29 8.08 31.19 0.25 -1.04 16 25 C -0.10 -1.13 8.10 30.98 0.25 -0.88 16 26 H 0.06 3.22 6.12 -2.39 -0.01 3.21 16 27 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.03 1.23 6.71 -2.39 -0.02 1.21 16 31 H 0.06 3.14 6.22 -2.39 -0.01 3.13 16 32 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 14.83 5.63 -92.71 -0.52 14.31 16 36 H 0.42 8.87 8.30 -92.71 -0.77 8.10 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -59.08 358.48 1.85 -57.23 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.28 Total: 29.26 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 4.74 Total: 1.81 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -4.54 Total: -93.34 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.11 Total: -39.30 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -59.08 1.85 -57.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875405588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.705 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds