Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46499 * 109.47552 * 269.98241 * 9 8 3 11 11 C 1.34771 * 120.00390 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99933 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00269 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47404 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47099 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46724 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46906 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00008 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99959 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47246 * 90.00021 * 21 19 17 23 23 H 1.48505 * 109.46750 * 209.99860 * 21 19 17 24 24 H 1.48495 * 109.46889 * 329.99681 * 21 19 17 25 25 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 27 27 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 28 28 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 29 29 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 30 30 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 31 31 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 32 32 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 33 33 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 34 34 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 35 35 H 0.96999 * 119.99206 * 0.02562 * 10 9 8 36 36 H 1.09004 * 109.47092 * 300.00551 * 13 11 10 37 37 H 1.09001 * 109.47079 * 60.00454 * 13 11 10 38 38 H 1.08995 * 109.47277 * 300.00424 * 14 13 11 39 39 H 1.09001 * 109.46945 * 59.99988 * 14 13 11 40 40 H 1.08996 * 109.47119 * 299.99502 * 15 14 13 41 41 H 1.09001 * 109.47160 * 60.00208 * 15 14 13 42 42 H 1.09004 * 109.47322 * 300.00117 * 16 15 14 43 43 H 1.09004 * 109.47623 * 60.00191 * 16 15 14 44 44 H 0.96997 * 120.00048 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8266 2.1508 3.0111 11 6 0.4792 1.9041 4.2897 12 8 1.2801 1.4022 5.0497 13 6 -0.9040 2.2528 4.7754 14 6 -1.0369 1.8738 6.2518 15 6 -2.4411 2.2285 6.7450 16 6 -2.5741 1.8489 8.2212 17 6 -3.9574 2.1976 8.7069 18 1 -4.6702 2.6457 8.0305 19 6 -4.3130 1.9448 10.0148 20 7 -5.5200 2.2496 10.4388 21 14 -3.0798 1.1705 11.1849 22 1 -2.3031 2.2388 11.8636 23 1 -3.8013 0.3619 12.2004 24 1 -2.1549 0.2951 10.4211 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.3063 5.2772 1.4850 31 1 3.6104 4.3388 2.2510 32 1 3.9091 5.1887 0.7159 33 1 2.3388 0.7414 2.6558 34 1 2.9104 2.3610 3.1230 35 1 0.1860 2.5518 2.4032 36 1 -1.0707 3.3237 4.6591 37 1 -1.6432 1.7046 4.1913 38 1 -0.8701 0.8030 6.3684 39 1 -0.2978 2.4223 6.8356 40 1 -2.6074 3.2994 6.6285 41 1 -3.1805 1.6803 6.1612 42 1 -2.4079 0.7778 8.3373 43 1 -1.8347 2.3967 8.8054 44 1 -5.7703 2.0714 11.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886677798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -14.053462 kcal Electronic energy + Delta-G solvation = -22874.885906 eV Core-core repulsion = 19408.383152 eV Total energy + Delta-G solvation = -3466.502754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.38503 -39.79563 -36.60720 -35.06372 -35.02391 -34.09098 -32.58623 -31.00499 -30.13003 -29.14186 -27.55071 -25.53796 -24.35768 -22.43474 -21.78631 -20.43327 -20.30275 -20.03040 -18.06692 -17.61450 -16.83353 -16.56189 -16.03781 -16.00397 -15.41293 -14.78196 -14.44293 -14.19307 -13.89438 -13.76080 -13.70468 -13.44796 -13.19106 -12.98884 -12.85822 -12.64581 -12.30719 -12.09679 -11.99557 -11.82929 -11.75269 -11.30845 -11.11810 -10.74736 -10.54638 -10.47280 -10.05639 -9.85729 -9.69995 -9.64447 -9.38232 -9.31445 -9.11944 -8.49497 -6.00642 -3.98151 0.94847 1.65656 2.59922 2.61431 3.17866 3.35169 3.42212 3.48038 3.71772 3.92986 4.27457 4.37228 4.49923 4.63723 4.67017 4.71145 4.81782 5.05451 5.07681 5.18054 5.22933 5.25742 5.27452 5.33615 5.34400 5.39664 5.41216 5.49354 5.67537 5.73659 5.76596 6.01918 6.12835 6.15681 6.40550 6.67527 6.81496 6.98651 7.30887 7.37935 7.50684 7.84244 7.84697 8.13787 8.58215 9.04384 9.62725 11.12876 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.002366 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.826481 B =11831.280560 C =12122.576914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.002 4.002 4 O 0.099 5.901 5 N -0.366 5.366 6 C 0.035 3.965 7 C -0.079 4.079 8 C -0.223 4.223 9 C 0.202 3.798 10 N -0.734 5.734 11 C 0.514 3.486 12 O -0.535 6.535 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.097 -1.424 -24.764 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.067 4.067 4 O 0.035 5.965 5 N -0.072 5.072 6 C -0.124 4.124 7 C -0.136 4.136 8 C -0.228 4.228 9 C 0.078 3.922 10 N -0.388 5.388 11 C 0.302 3.698 12 O -0.411 6.411 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.864 -0.994 -25.078 30.807 hybrid contribution 0.169 -0.396 1.016 1.103 sum 18.033 -1.390 -24.063 30.102 Atomic orbital electron populations 1.21794 0.92901 1.03249 1.02900 1.20223 0.97123 0.86196 1.04974 1.24460 0.99622 0.96788 0.85820 1.84842 1.61302 1.17532 1.32782 1.73894 1.17742 0.99560 1.16045 1.23500 1.01222 0.97715 0.89993 1.20216 1.02251 0.92130 0.99035 1.20943 1.10416 0.94429 0.96980 1.19298 0.85443 1.01018 0.86441 1.46173 1.14578 1.65717 1.12343 1.21098 0.90537 0.77362 0.80848 1.90713 1.52928 1.42779 1.54696 1.21780 0.92717 1.03422 0.99925 1.21483 0.99149 1.02001 0.91761 1.21477 0.93493 1.00449 0.98613 1.19578 0.97341 0.96353 0.92010 1.21186 0.97148 1.40853 0.96548 0.91122 1.25048 0.95132 0.95218 0.98241 1.69921 1.19041 1.48686 1.16897 0.86771 0.81735 0.79958 0.80817 1.20325 1.21470 1.18884 0.90877 0.91883 0.91968 0.89088 0.88292 0.89838 0.89814 0.90375 0.90267 0.90206 0.76568 0.88974 0.88971 0.91767 0.91788 0.92877 0.92846 0.96619 0.97064 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.90 37.16 0.37 -0.34 16 2 C -0.05 -0.23 6.35 -27.88 -0.18 -0.40 16 3 C 0.00 -0.02 6.74 -35.31 -0.24 -0.25 16 4 O 0.10 0.92 11.20 17.17 0.19 1.11 16 5 N -0.37 -3.82 12.07 33.42 0.40 -3.42 16 6 C 0.04 0.31 7.33 -82.10 -0.60 -0.29 16 7 C -0.08 -0.53 10.39 36.00 0.37 -0.15 16 8 C -0.22 -1.78 5.69 -104.42 -0.59 -2.37 16 9 C 0.20 1.68 5.99 -5.19 -0.03 1.65 16 10 N -0.73 -6.38 5.55 -61.48 -0.34 -6.72 16 11 C 0.51 6.25 7.83 -10.99 -0.09 6.17 16 12 O -0.54 -8.72 15.98 5.55 0.09 -8.63 16 13 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 14 C -0.11 -1.72 4.50 -26.73 -0.12 -1.84 16 15 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 17 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 21 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.43 7.44 -51.93 -0.39 0.04 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.66 7.45 -51.93 -0.39 0.28 16 34 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 35 H 0.40 2.72 8.46 -40.82 -0.35 2.38 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -34.67 369.08 -7.27 -41.94 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -7.34 Total: -4.10 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.95 Total: -15.78 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.84 Total: -37.68 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.28 Total: -7.52 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.67 -7.27 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886677798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.891 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds