Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46499 * 109.47552 * 269.98241 * 9 8 3 11 11 C 1.34771 * 120.00390 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99933 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00269 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47404 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47099 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46724 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46906 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00008 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99959 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47246 * 90.00021 * 21 19 17 23 23 H 1.48505 * 109.46750 * 209.99860 * 21 19 17 24 24 H 1.48495 * 109.46889 * 329.99681 * 21 19 17 25 25 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 27 27 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 28 28 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 29 29 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 30 30 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 31 31 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 32 32 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 33 33 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 34 34 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 35 35 H 0.96999 * 119.99206 * 0.02562 * 10 9 8 36 36 H 1.09004 * 109.47092 * 300.00551 * 13 11 10 37 37 H 1.09001 * 109.47079 * 60.00454 * 13 11 10 38 38 H 1.08995 * 109.47277 * 300.00424 * 14 13 11 39 39 H 1.09001 * 109.46945 * 59.99988 * 14 13 11 40 40 H 1.08996 * 109.47119 * 299.99502 * 15 14 13 41 41 H 1.09001 * 109.47160 * 60.00208 * 15 14 13 42 42 H 1.09004 * 109.47322 * 300.00117 * 16 15 14 43 43 H 1.09004 * 109.47623 * 60.00191 * 16 15 14 44 44 H 0.96997 * 120.00048 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8266 2.1508 3.0111 11 6 0.4792 1.9041 4.2897 12 8 1.2801 1.4022 5.0497 13 6 -0.9040 2.2528 4.7754 14 6 -1.0369 1.8738 6.2518 15 6 -2.4411 2.2285 6.7450 16 6 -2.5741 1.8489 8.2212 17 6 -3.9574 2.1976 8.7069 18 1 -4.6702 2.6457 8.0305 19 6 -4.3130 1.9448 10.0148 20 7 -5.5200 2.2496 10.4388 21 14 -3.0798 1.1705 11.1849 22 1 -2.3031 2.2388 11.8636 23 1 -3.8013 0.3619 12.2004 24 1 -2.1549 0.2951 10.4211 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.3063 5.2772 1.4850 31 1 3.6104 4.3388 2.2510 32 1 3.9091 5.1887 0.7159 33 1 2.3388 0.7414 2.6558 34 1 2.9104 2.3610 3.1230 35 1 0.1860 2.5518 2.4032 36 1 -1.0707 3.3237 4.6591 37 1 -1.6432 1.7046 4.1913 38 1 -0.8701 0.8030 6.3684 39 1 -0.2978 2.4223 6.8356 40 1 -2.6074 3.2994 6.6285 41 1 -3.1805 1.6803 6.1612 42 1 -2.4079 0.7778 8.3373 43 1 -1.8347 2.3967 8.8054 44 1 -5.7703 2.0714 11.3588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886677798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -36.186794 kcal Electronic energy + Delta-G solvation = -22875.845679 eV Core-core repulsion = 19408.383152 eV Total energy + Delta-G solvation = -3467.462527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.04146 -40.74685 -37.35854 -36.57848 -35.56674 -34.85296 -34.57324 -32.06845 -31.27639 -29.73792 -28.58176 -26.94935 -24.80855 -23.81636 -22.66707 -21.72989 -21.28420 -20.95281 -18.84134 -18.74085 -18.34841 -17.59502 -16.95842 -16.88179 -16.28090 -16.12138 -15.53885 -15.29623 -14.92634 -14.60411 -14.49567 -14.28635 -14.06608 -13.87188 -13.77706 -13.66223 -13.46240 -13.40440 -13.31068 -12.82408 -12.44068 -12.32894 -12.30585 -12.04154 -11.79890 -11.73705 -11.49687 -11.31941 -11.24827 -11.15950 -10.78131 -10.74586 -10.27290 -10.12615 -8.28324 -6.31375 0.34381 1.00327 1.36380 1.37771 1.50653 1.68416 2.03311 2.37355 2.38358 3.07251 3.11898 3.38734 3.65307 3.82430 3.89921 4.07099 4.18638 4.19506 4.27420 4.30001 4.51012 4.59616 4.61330 4.66125 4.69736 4.70846 4.79330 4.80933 4.90149 4.91160 5.01598 5.08984 5.17234 5.18488 5.22847 5.29435 5.34548 5.40400 5.63618 5.68642 5.70809 6.31157 6.53264 6.76958 7.21470 7.26434 7.33551 8.88320 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.002366 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.826481 B =11831.280560 C =12122.576914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.008 3.992 4 O 0.087 5.913 5 N -0.396 5.396 6 C 0.031 3.969 7 C -0.080 4.080 8 C -0.229 4.229 9 C 0.207 3.793 10 N -0.715 5.715 11 C 0.518 3.482 12 O -0.581 6.581 13 C -0.132 4.132 14 C -0.097 4.097 15 C -0.094 4.094 16 C -0.017 4.017 17 C -0.530 4.530 18 H 0.036 0.964 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.250 1.250 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.409 -2.096 -25.552 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.057 4.057 4 O 0.026 5.974 5 N -0.104 5.104 6 C -0.129 4.129 7 C -0.137 4.137 8 C -0.233 4.233 9 C 0.083 3.917 10 N -0.368 5.368 11 C 0.307 3.693 12 O -0.460 6.460 13 C -0.172 4.172 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.055 4.055 17 C -0.568 4.568 18 H 0.054 0.946 19 C -0.194 4.194 20 N -0.593 5.593 21 Si 0.772 3.228 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.174 1.174 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.168 -1.659 -25.929 32.288 hybrid contribution -0.307 -0.159 1.184 1.233 sum 18.861 -1.818 -24.745 31.167 Atomic orbital electron populations 1.21791 0.92607 1.03853 1.02470 1.20390 0.97223 0.84690 1.06188 1.24935 0.98122 0.97418 0.85188 1.84813 1.61580 1.17552 1.33439 1.73895 1.19289 1.00326 1.16920 1.23893 1.00539 0.98606 0.89825 1.20309 1.02693 0.91566 0.99141 1.20861 1.11282 0.94381 0.96820 1.19255 0.84874 1.01115 0.86463 1.45979 1.15029 1.64428 1.11409 1.21046 0.90145 0.76794 0.81351 1.90705 1.54094 1.45152 1.56073 1.21681 0.93289 1.05105 0.97090 1.21277 0.96395 1.01171 0.94677 1.21343 0.95756 1.00625 0.95486 1.19581 0.94371 0.96180 0.95318 1.21561 0.98768 1.40186 0.96290 0.94557 1.26012 0.97137 0.95918 1.00339 1.70064 1.21253 1.50318 1.17640 0.85684 0.79292 0.79398 0.78451 1.19276 1.20843 1.17384 0.89785 0.92512 0.92188 0.87517 0.87454 0.89039 0.89023 0.90104 0.90004 0.90582 0.75150 0.86855 0.86615 0.92791 0.92904 0.92604 0.92488 0.96697 0.96901 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 71.98 0.71 -0.37 16 2 C -0.05 -0.35 6.35 29.85 0.19 -0.16 16 3 C 0.01 0.11 6.74 25.04 0.17 0.28 16 4 O 0.09 1.54 11.20 71.61 0.80 2.34 16 5 N -0.40 -7.98 12.07 -49.55 -0.60 -8.58 16 6 C 0.03 0.51 7.33 43.58 0.32 0.83 16 7 C -0.08 -0.96 10.39 71.23 0.74 -0.22 16 8 C -0.23 -3.28 5.69 -19.73 -0.11 -3.39 16 9 C 0.21 3.06 5.99 85.63 0.51 3.57 16 10 N -0.72 -10.72 5.55 -466.80 -2.59 -13.31 16 11 C 0.52 11.47 7.83 87.66 0.69 12.16 16 12 O -0.58 -18.13 15.98 -3.04 -0.05 -18.18 16 13 C -0.13 -2.75 5.70 29.85 0.17 -2.58 16 14 C -0.10 -2.98 4.50 30.59 0.14 -2.84 16 15 C -0.09 -3.52 5.15 30.59 0.16 -3.36 16 16 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 17 C -0.53 -30.99 9.66 25.60 0.25 -30.74 16 18 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 19 C 0.00 0.14 5.47 84.65 0.46 0.61 16 20 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 21 Si 0.95 45.53 27.47 68.60 1.88 47.42 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 25 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.66 7.44 -2.39 -0.02 0.64 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.94 7.66 -2.39 -0.02 0.92 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.22 7.45 -2.39 -0.02 1.20 16 34 H 0.08 1.23 7.66 -2.39 -0.02 1.22 16 35 H 0.41 4.43 8.46 -92.71 -0.78 3.64 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 43 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -75.59 369.08 4.41 -71.18 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.15 Total: 6.18 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.51 Total: -26.92 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.89 Total: -82.03 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.75 Total: -15.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.42 kcal Total: -75.59 4.41 -71.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886677798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.995 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds