Wall clock time and date at job start Tue Mar 31 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46868 * 222.98004 * 3 2 1 5 5 N 1.46494 * 109.54137 * 305.43945 * 4 3 2 6 6 C 1.34783 * 120.00151 * 298.41177 * 5 4 3 7 7 O 1.21584 * 119.99960 * 5.06308 * 6 5 4 8 8 N 1.34781 * 119.99674 * 185.06750 * 6 5 4 9 9 C 1.46499 * 119.99552 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47206 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47504 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47143 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99755 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99772 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47175 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47084 * 119.99950 * 16 14 12 19 19 H 1.48500 * 109.46873 * 239.99691 * 16 14 12 20 20 C 1.53179 * 109.61684 * 65.65250 * 4 3 2 21 21 C 1.53090 * 109.16198 * 176.87918 * 20 4 3 22 22 O 1.42902 * 109.42491 * 302.40836 * 21 20 4 23 23 C 1.42910 * 114.09846 * 61.15074 * 22 21 20 24 24 C 1.53084 * 109.41498 * 298.84317 * 23 22 21 25 25 H 4.44651 * 5.63382 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47570 * 102.98003 * 3 2 1 27 27 H 1.09001 * 109.47322 * 342.97622 * 3 2 1 28 28 H 0.97000 * 120.00171 * 118.41493 * 5 4 3 29 29 H 0.96997 * 120.00438 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.47395 * 300.00301 * 9 8 6 31 31 H 1.09008 * 109.47136 * 59.99611 * 9 8 6 32 32 H 1.09004 * 109.47426 * 299.99935 * 10 9 8 33 33 H 1.08999 * 109.47078 * 59.99826 * 10 9 8 34 34 H 1.08998 * 109.46956 * 300.00043 * 11 10 9 35 35 H 1.08997 * 109.46799 * 60.00018 * 11 10 9 36 36 H 0.96999 * 119.99865 * 180.02562 * 15 14 12 37 37 H 1.08993 * 109.51321 * 56.98184 * 20 4 3 38 38 H 1.08999 * 109.52927 * 296.78835 * 20 4 3 39 39 H 1.08997 * 109.48397 * 182.41680 * 21 20 4 40 40 H 1.09007 * 109.48167 * 62.39644 * 21 20 4 41 41 H 1.09001 * 109.47918 * 58.82378 * 23 22 21 42 42 H 1.08995 * 109.48140 * 178.84473 * 23 22 21 43 43 H 1.08999 * 109.52377 * 177.51474 * 24 23 22 44 44 H 1.08998 * 109.52559 * 297.70426 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0563 0.9835 5 7 2.5635 2.3560 0.6574 6 6 2.8037 2.9245 -0.5408 7 8 3.4349 2.3190 -1.3853 8 7 2.3443 4.1642 -0.8027 9 6 2.6060 4.7823 -2.1049 10 6 1.9802 6.1779 -2.1420 11 6 2.2529 6.8232 -3.5022 12 6 1.6369 8.1981 -3.5384 13 1 1.1046 8.5742 -2.6773 14 6 1.7530 8.9759 -4.6710 15 7 2.4016 8.5180 -5.7194 16 14 0.9901 10.6804 -4.7156 17 1 0.3223 10.9580 -3.4187 18 1 2.0516 11.6918 -4.9517 19 1 -0.0094 10.7467 -5.8119 20 6 2.7662 0.6597 2.4109 21 6 3.3474 1.6808 3.3923 22 8 4.7660 1.7408 3.2311 23 6 5.1884 2.1525 1.9294 24 6 4.6815 1.1502 0.8893 25 1 -1.0502 -0.0001 -0.0004 26 1 3.0093 0.2316 -1.0013 27 1 3.0098 -0.9818 0.3009 28 1 1.9986 2.8075 1.3039 29 1 1.8405 4.6472 -0.1291 30 1 3.6820 4.8620 -2.2597 31 1 2.1702 4.1679 -2.8929 32 1 0.9041 6.0978 -1.9875 33 1 2.4156 6.7924 -1.3540 34 1 3.3288 6.9033 -3.6571 35 1 1.8171 6.2086 -4.2898 36 1 2.4836 9.0654 -6.5160 37 1 3.1652 -0.3294 2.6356 38 1 1.6801 0.6446 2.5015 39 1 3.1099 1.3802 4.4128 40 1 2.9170 2.6623 3.1931 41 1 4.7821 3.1400 1.7108 42 1 6.2772 2.1919 1.8962 43 1 4.9649 1.4857 -0.1083 44 1 5.1193 0.1710 1.0833 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888160196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:26 Heat of formation + Delta-G solvation = -39.951413 kcal Electronic energy + Delta-G solvation = -23877.971866 eV Core-core repulsion = 20410.346093 eV Total energy + Delta-G solvation = -3467.625773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98139 -38.91562 -36.46750 -35.15921 -33.52657 -33.14024 -31.95253 -31.43976 -30.64099 -28.51150 -26.60501 -24.04096 -23.78007 -23.05428 -21.15756 -20.58427 -19.57137 -18.32840 -18.06366 -16.71755 -16.35296 -16.28206 -15.82482 -15.60316 -15.03058 -14.83647 -14.61919 -14.41326 -14.19955 -13.79254 -13.27283 -13.24203 -13.05241 -12.69716 -12.42140 -12.29249 -11.80763 -11.74463 -11.61782 -11.10756 -10.93107 -10.83035 -10.72870 -10.57325 -10.42242 -10.28292 -9.94081 -9.86337 -9.73434 -9.41654 -9.14468 -9.11704 -8.62300 -8.38194 -6.02634 -4.05653 2.68011 2.76727 2.83657 3.29241 3.33536 3.36799 3.40264 3.61248 4.12535 4.23972 4.40498 4.45160 4.51085 4.62905 4.75194 4.86422 5.13294 5.26106 5.33270 5.34868 5.39456 5.45553 5.52999 5.65561 5.68125 5.75286 5.80441 5.83727 5.96888 5.99273 6.17576 6.47991 6.52411 6.61447 6.80295 6.92035 7.01542 7.05396 7.56635 7.63260 7.75830 7.96365 8.13321 8.37351 8.74092 9.01283 9.58608 11.08696 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002850 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.324947 B = 9823.796875 C =10281.070983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.166 4.166 3 C -0.029 4.029 4 C 0.207 3.793 5 N -0.742 5.742 6 C 0.705 3.295 7 O -0.589 6.589 8 N -0.742 5.742 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.158 4.158 21 C 0.062 3.938 22 O -0.383 6.383 23 C 0.064 3.936 24 C -0.168 4.168 25 H 0.213 0.787 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.393 0.607 29 H 0.392 0.608 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -17.471 18.861 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.166 4.166 3 C -0.066 4.066 4 C 0.120 3.880 5 N -0.399 5.399 6 C 0.405 3.595 7 O -0.467 6.467 8 N -0.396 5.396 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.196 4.196 21 C -0.015 4.015 22 O -0.301 6.301 23 C -0.012 4.012 24 C -0.207 4.207 25 H 0.230 0.770 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.225 0.775 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.259 -18.005 18.022 25.507 hybrid contribution -1.446 1.473 0.162 2.071 sum -0.187 -16.532 18.185 24.577 Atomic orbital electron populations 1.24800 0.95849 1.01554 1.01830 1.22880 0.94210 0.99768 0.99733 1.19313 0.85340 0.98922 1.03012 1.19998 0.92612 0.82142 0.93261 1.45250 1.55455 1.22069 1.17127 1.15964 0.79945 0.81539 0.82041 1.90837 1.46049 1.63374 1.46466 1.45423 1.59648 1.15631 1.18851 1.21491 1.00697 0.94389 0.82119 1.21887 0.99396 0.92477 1.02075 1.19027 0.97391 0.95083 0.89860 1.21241 1.34705 1.00419 0.99641 0.92625 1.25033 0.95392 0.98361 0.95704 1.69976 1.41914 1.37284 1.04073 0.86531 0.79041 0.84397 0.77990 1.19769 1.20991 1.20998 1.22516 1.02249 1.01212 0.93602 1.22545 0.81798 0.97788 0.99415 1.87933 1.21393 1.88956 1.31862 1.22548 0.99994 0.96691 0.81978 1.22646 0.94210 1.01329 1.02468 0.76994 0.86806 0.89255 0.77315 0.77457 0.91953 0.92037 0.92848 0.92810 0.96254 0.96271 0.92978 0.89253 0.90046 0.88677 0.93226 0.92962 0.88731 0.87938 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.35 19.25 29.55 0.57 -1.78 16 2 C -0.17 -1.89 11.85 -37.12 -0.44 -2.33 16 3 C -0.03 -0.30 4.50 -29.52 -0.13 -0.43 16 4 C 0.21 1.95 0.35 -131.63 -0.05 1.91 16 5 N -0.74 -7.68 3.61 -52.24 -0.19 -7.87 16 6 C 0.70 10.02 7.96 -86.91 -0.69 9.33 16 7 O -0.59 -10.31 12.65 5.29 0.07 -10.24 16 8 N -0.74 -10.44 5.56 -65.23 -0.36 -10.80 16 9 C 0.14 2.38 5.67 -4.05 -0.02 2.36 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 C -0.16 -1.14 4.72 -26.59 -0.13 -1.27 16 21 C 0.06 0.45 6.67 37.20 0.25 0.70 16 22 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 23 C 0.06 0.62 6.68 37.20 0.25 0.87 16 24 C -0.17 -1.65 4.74 -26.59 -0.13 -1.78 16 25 H 0.21 1.60 7.80 -54.08 -0.42 1.18 16 26 H 0.11 1.51 6.29 -51.93 -0.33 1.18 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 3.25 7.60 -40.82 -0.31 2.94 16 29 H 0.39 4.49 8.49 -40.82 -0.35 4.14 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.56 7.53 -51.93 -0.39 0.17 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.34 7.13 -51.93 -0.37 -0.03 16 41 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 1.27 6.18 -51.93 -0.32 0.95 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -32.86 358.31 -8.04 -40.90 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.08 Total: 4.19 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.21 Total: -7.79 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.19 Total: -44.73 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.31 Total: -14.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.86 -8.04 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888160196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds