Wall clock time and date at job start Tue Mar 31 2020 06:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46868 * 222.98004 * 3 2 1 5 5 N 1.46494 * 109.54137 * 305.43945 * 4 3 2 6 6 C 1.34783 * 120.00151 * 298.41177 * 5 4 3 7 7 O 1.21584 * 119.99960 * 5.06308 * 6 5 4 8 8 N 1.34781 * 119.99674 * 185.06750 * 6 5 4 9 9 C 1.46499 * 119.99552 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47206 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47504 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47143 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99755 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99772 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47175 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47084 * 119.99950 * 16 14 12 19 19 H 1.48500 * 109.46873 * 239.99691 * 16 14 12 20 20 C 1.53179 * 109.61684 * 65.65250 * 4 3 2 21 21 C 1.53090 * 109.16198 * 176.87918 * 20 4 3 22 22 O 1.42902 * 109.42491 * 302.40836 * 21 20 4 23 23 C 1.42910 * 114.09846 * 61.15074 * 22 21 20 24 24 C 1.53084 * 109.41498 * 298.84317 * 23 22 21 25 25 H 4.44651 * 5.63382 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47570 * 102.98003 * 3 2 1 27 27 H 1.09001 * 109.47322 * 342.97622 * 3 2 1 28 28 H 0.97000 * 120.00171 * 118.41493 * 5 4 3 29 29 H 0.96997 * 120.00438 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.47395 * 300.00301 * 9 8 6 31 31 H 1.09008 * 109.47136 * 59.99611 * 9 8 6 32 32 H 1.09004 * 109.47426 * 299.99935 * 10 9 8 33 33 H 1.08999 * 109.47078 * 59.99826 * 10 9 8 34 34 H 1.08998 * 109.46956 * 300.00043 * 11 10 9 35 35 H 1.08997 * 109.46799 * 60.00018 * 11 10 9 36 36 H 0.96999 * 119.99865 * 180.02562 * 15 14 12 37 37 H 1.08993 * 109.51321 * 56.98184 * 20 4 3 38 38 H 1.08999 * 109.52927 * 296.78835 * 20 4 3 39 39 H 1.08997 * 109.48397 * 182.41680 * 21 20 4 40 40 H 1.09007 * 109.48167 * 62.39644 * 21 20 4 41 41 H 1.09001 * 109.47918 * 58.82378 * 23 22 21 42 42 H 1.08995 * 109.48140 * 178.84473 * 23 22 21 43 43 H 1.08999 * 109.52377 * 177.51474 * 24 23 22 44 44 H 1.08998 * 109.52559 * 297.70426 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0563 0.9835 5 7 2.5635 2.3560 0.6574 6 6 2.8037 2.9245 -0.5408 7 8 3.4349 2.3190 -1.3853 8 7 2.3443 4.1642 -0.8027 9 6 2.6060 4.7823 -2.1049 10 6 1.9802 6.1779 -2.1420 11 6 2.2529 6.8232 -3.5022 12 6 1.6369 8.1981 -3.5384 13 1 1.1046 8.5742 -2.6773 14 6 1.7530 8.9759 -4.6710 15 7 2.4016 8.5180 -5.7194 16 14 0.9901 10.6804 -4.7156 17 1 0.3223 10.9580 -3.4187 18 1 2.0516 11.6918 -4.9517 19 1 -0.0094 10.7467 -5.8119 20 6 2.7662 0.6597 2.4109 21 6 3.3474 1.6808 3.3923 22 8 4.7660 1.7408 3.2311 23 6 5.1884 2.1525 1.9294 24 6 4.6815 1.1502 0.8893 25 1 -1.0502 -0.0001 -0.0004 26 1 3.0093 0.2316 -1.0013 27 1 3.0098 -0.9818 0.3009 28 1 1.9986 2.8075 1.3039 29 1 1.8405 4.6472 -0.1291 30 1 3.6820 4.8620 -2.2597 31 1 2.1702 4.1679 -2.8929 32 1 0.9041 6.0978 -1.9875 33 1 2.4156 6.7924 -1.3540 34 1 3.3288 6.9033 -3.6571 35 1 1.8171 6.2086 -4.2898 36 1 2.4836 9.0654 -6.5160 37 1 3.1652 -0.3294 2.6356 38 1 1.6801 0.6446 2.5015 39 1 3.1099 1.3802 4.4128 40 1 2.9170 2.6623 3.1931 41 1 4.7821 3.1400 1.7108 42 1 6.2772 2.1919 1.8962 43 1 4.9649 1.4857 -0.1083 44 1 5.1193 0.1710 1.0833 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888160196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:25 Heat of formation + Delta-G solvation = -62.025546 kcal Electronic energy + Delta-G solvation = -23878.929072 eV Core-core repulsion = 20410.346093 eV Total energy + Delta-G solvation = -3468.582980 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89356 -39.89333 -37.45303 -36.56356 -35.19127 -34.23146 -33.26605 -32.11395 -32.02753 -29.29608 -28.41526 -25.18800 -24.68620 -24.25051 -22.30595 -22.22515 -20.49576 -19.38206 -18.92495 -18.51935 -17.42548 -16.99021 -16.82390 -16.75467 -16.50004 -15.98541 -15.87342 -15.50157 -15.42135 -14.92850 -14.29978 -14.24604 -13.95984 -13.84848 -13.72189 -13.51594 -13.40370 -13.11111 -12.77268 -12.54758 -12.34222 -12.30943 -11.86154 -11.67853 -11.61971 -11.52998 -11.31795 -11.18245 -11.08400 -10.76531 -10.59028 -10.56315 -10.21244 -9.74996 -8.19778 -6.31212 1.41582 1.41690 1.54891 1.68614 1.90853 1.98143 2.19623 2.41744 2.95126 3.14093 3.26463 3.39558 3.67156 3.81338 3.92049 4.03136 4.17176 4.23641 4.26032 4.40923 4.55505 4.56657 4.67274 4.71455 4.78573 4.81871 4.96154 4.97492 4.99416 5.04087 5.08111 5.13858 5.17301 5.22562 5.48659 5.57450 5.61124 5.71014 5.84246 6.01147 6.22666 6.24371 6.75279 6.86313 7.12370 7.38445 7.63028 8.92579 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.002850 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.324947 B = 9823.796875 C =10281.070983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.196 4.196 3 C -0.027 4.027 4 C 0.205 3.795 5 N -0.725 5.725 6 C 0.703 3.297 7 O -0.624 6.624 8 N -0.734 5.734 9 C 0.153 3.847 10 C -0.100 4.100 11 C 0.024 3.976 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.146 4.146 21 C 0.056 3.944 22 O -0.394 6.394 23 C 0.068 3.932 24 C -0.164 4.164 25 H 0.238 0.762 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.406 0.594 29 H 0.408 0.592 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.067 0.933 34 H -0.008 1.008 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -17.326 21.433 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.196 4.196 3 C -0.065 4.065 4 C 0.119 3.881 5 N -0.381 5.381 6 C 0.403 3.597 7 O -0.505 6.505 8 N -0.389 5.389 9 C 0.029 3.971 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.184 4.184 21 C -0.021 4.021 22 O -0.313 6.313 23 C -0.008 4.008 24 C -0.203 4.203 25 H 0.255 0.745 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.243 0.757 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.254 -17.868 20.663 27.318 hybrid contribution -0.984 1.350 -0.637 1.788 sum -1.238 -16.519 20.026 25.989 Atomic orbital electron populations 1.25513 0.96664 1.00598 1.00633 1.23199 0.94801 1.00761 1.00831 1.19263 0.85326 1.00298 1.01574 1.20143 0.92204 0.81191 0.94605 1.45103 1.54912 1.22234 1.15869 1.16092 0.79588 0.81290 0.82756 1.90833 1.47512 1.64173 1.47949 1.45088 1.60040 1.15854 1.17943 1.21010 0.99365 0.93316 0.83451 1.21580 1.00341 0.93075 0.98823 1.18936 0.95255 0.94694 0.92474 1.21708 1.34641 1.01400 1.00043 0.91573 1.26027 0.95858 1.02950 0.95299 1.70119 1.43409 1.39150 1.04862 0.85365 0.78114 0.78778 0.78574 1.18181 1.20567 1.20591 1.22459 1.02872 1.01668 0.91439 1.22762 0.80542 0.98174 1.00580 1.87925 1.22987 1.88931 1.31486 1.22474 1.00329 0.95949 0.82077 1.22574 0.94731 1.02053 1.00925 0.74545 0.90033 0.87229 0.75749 0.75579 0.93434 0.93852 0.91615 0.91430 0.98913 0.99045 0.92814 0.88172 0.89045 0.86588 0.92708 0.94026 0.88274 0.90823 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.15 19.25 74.32 1.43 -2.71 16 2 C -0.20 -4.23 11.85 31.12 0.37 -3.86 16 3 C -0.03 -0.56 4.50 28.79 0.13 -0.43 16 4 C 0.21 3.63 0.35 3.73 0.00 3.63 16 5 N -0.72 -14.17 3.61 -437.45 -1.58 -15.75 16 6 C 0.70 19.89 7.96 179.05 1.43 21.32 16 7 O -0.62 -22.60 12.65 -3.98 -0.05 -22.65 16 8 N -0.73 -20.18 5.56 -478.54 -2.66 -22.84 16 9 C 0.15 5.46 5.67 86.38 0.49 5.95 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.70 16 11 C 0.02 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 15 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 16 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.15 -1.73 4.72 30.68 0.14 -1.58 16 21 C 0.06 0.67 6.67 72.01 0.48 1.15 16 22 O -0.39 -7.01 10.77 -148.98 -1.60 -8.61 16 23 C 0.07 1.27 6.68 72.01 0.48 1.75 16 24 C -0.16 -3.17 4.74 30.68 0.15 -3.02 16 25 H 0.24 2.92 7.80 -4.41 -0.03 2.88 16 26 H 0.08 2.25 6.29 -2.39 -0.02 2.24 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.41 5.83 7.60 -92.71 -0.70 5.12 16 29 H 0.41 8.58 8.49 -92.71 -0.79 7.79 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.95 7.53 -2.39 -0.02 0.93 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.60 7.13 -2.38 -0.02 0.58 16 41 H 0.04 0.85 7.75 -2.39 -0.02 0.83 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.90 6.18 -2.39 -0.01 1.88 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.39 358.31 2.02 -70.36 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.50 Total: 20.43 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.10 Total: -9.80 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -3.96 Total: -95.56 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.65 Total: -31.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.39 2.02 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888160196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.338 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds