Wall clock time and date at job start Tue Mar 31 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47226 * 2 1 4 4 C 1.35316 * 126.66451 * 90.26636 * 3 2 1 5 5 C 1.42270 * 103.92199 * 180.10701 * 4 3 2 6 6 C 1.48331 * 126.94068 * 179.90466 * 5 4 3 7 7 O 1.21491 * 119.99864 * 354.54235 * 6 5 4 8 8 N 1.34775 * 120.00037 * 174.53846 * 6 5 4 9 9 C 1.46498 * 120.00152 * 185.64695 * 8 6 5 10 10 C 1.50703 * 109.47218 * 90.00033 * 9 8 6 11 11 H 1.08001 * 119.99649 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00508 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99800 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47141 * 89.99836 * 14 12 10 16 16 H 1.48498 * 109.47145 * 209.99928 * 14 12 10 17 17 H 1.48506 * 109.46886 * 330.00109 * 14 12 10 18 18 C 1.46500 * 119.99951 * 5.64903 * 8 6 5 19 19 C 1.53004 * 109.47030 * 92.88688 * 18 8 6 20 20 C 1.52997 * 109.47360 * 55.57637 * 19 18 8 21 21 C 1.53004 * 109.47131 * 175.57914 * 19 18 8 22 22 C 1.53003 * 109.47015 * 295.57418 * 19 18 8 23 23 N 1.30990 * 106.12211 * 359.64488 * 5 4 3 24 24 O 1.20903 * 111.44078 * 0.22552 * 23 5 4 25 25 H 1.08995 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00242 * 1 2 3 27 27 H 1.09000 * 109.47234 * 59.99833 * 1 2 3 28 28 H 1.09000 * 109.47121 * 239.99758 * 2 1 3 29 29 H 1.09000 * 109.47234 * 120.00167 * 2 1 3 30 30 H 1.08002 * 128.04325 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47528 * 209.99961 * 9 8 6 32 32 H 1.09004 * 109.47264 * 330.00429 * 9 8 6 33 33 H 0.96993 * 120.00616 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.46962 * 212.88009 * 18 8 6 35 35 H 1.08996 * 109.47236 * 332.88683 * 18 8 6 36 36 H 1.09001 * 109.46958 * 60.00131 * 20 19 18 37 37 H 1.08996 * 109.47255 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47001 * 300.00121 * 20 19 18 39 39 H 1.09000 * 109.46975 * 59.99567 * 21 19 18 40 40 H 1.08996 * 109.47288 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47080 * 299.99803 * 21 19 18 42 42 H 1.09008 * 109.46643 * 63.78022 * 22 19 18 43 43 H 1.08996 * 109.47134 * 183.78057 * 22 19 18 44 44 H 1.08997 * 109.47347 * 303.78495 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3064 2.1809 1.0854 5 6 2.7390 3.4196 0.5354 6 6 3.1662 4.6267 1.2842 7 8 3.0752 4.6541 2.4954 8 7 3.6554 5.6931 0.6209 9 6 4.1920 6.8354 1.3648 10 6 5.6647 6.6291 1.6089 11 1 6.1523 5.7364 1.2458 12 6 6.3895 7.5798 2.2957 13 7 5.7957 8.6665 2.7382 14 14 8.2152 7.3243 2.5976 15 1 8.9893 7.9062 1.4718 16 1 8.6057 7.9929 3.8647 17 1 8.5019 5.8705 2.6961 18 6 3.6507 5.7099 -0.8440 19 6 2.3728 6.3881 -1.3421 20 6 2.2636 7.7847 -0.7269 21 6 2.4184 6.5047 -2.8670 22 6 1.1586 5.5531 -0.9306 23 7 2.6891 3.2771 -0.7657 24 8 2.2996 2.1751 -1.0750 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2157 1.9108 2.1272 31 1 4.0438 7.7475 0.7866 32 1 3.6741 6.9226 2.3200 33 1 6.3056 9.3355 3.2211 34 1 4.5190 6.2620 -1.2038 35 1 3.6892 4.6873 -1.2192 36 1 3.1286 8.3795 -1.0201 37 1 1.3535 8.2680 -1.0821 38 1 2.2311 7.7016 0.3594 39 1 2.4963 5.5097 -3.3052 40 1 1.5079 6.9874 -3.2219 41 1 3.2835 7.0995 -3.1602 42 1 1.0880 5.5261 0.1569 43 1 0.2538 6.0001 -1.3424 44 1 1.2690 4.5383 -1.3128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888903270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:12 Heat of formation + Delta-G solvation = 26.634018 kcal Electronic energy + Delta-G solvation = -25175.799890 eV Core-core repulsion = 21711.061478 eV Total energy + Delta-G solvation = -3464.738412 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.91014 -39.38494 -37.00273 -34.99737 -33.92882 -33.63921 -32.30534 -30.26163 -27.99169 -27.00321 -26.71686 -25.72846 -24.48443 -24.14030 -22.60809 -21.49313 -19.08721 -18.44157 -17.67273 -16.97806 -16.54053 -16.23191 -15.38170 -14.79552 -14.74659 -14.32029 -14.28336 -13.87478 -13.64878 -13.44264 -13.28321 -12.81504 -12.67386 -12.45899 -12.25658 -11.97929 -11.79475 -11.63390 -11.33191 -11.28225 -11.25787 -10.99403 -10.93100 -10.77898 -10.47502 -10.30792 -10.17225 -10.07134 -9.88497 -9.55337 -9.30437 -9.23730 -8.42483 -7.65236 -6.04749 -4.09522 1.36711 1.91926 3.02588 3.30204 3.36537 3.40775 3.67033 3.84244 4.27573 4.42733 4.54974 4.81030 4.92045 5.07938 5.15011 5.17362 5.21399 5.29071 5.36084 5.45019 5.51403 5.55274 5.74276 5.85220 5.87554 5.90504 5.91903 6.03134 6.10002 6.13955 6.22241 6.31795 6.32687 6.51997 6.59675 6.69563 6.83351 7.08508 7.41108 7.52125 7.91130 8.19108 8.22438 8.37222 8.82890 8.99823 9.55152 11.03110 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.005156 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.262898 B = 5428.904457 C = 6483.229927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.042 4.042 4 C -0.183 4.183 5 C -0.008 4.008 6 C 0.582 3.418 7 O -0.530 6.530 8 N -0.572 5.572 9 C 0.240 3.760 10 C -0.529 4.529 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.101 3.899 19 C -0.078 4.078 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.143 4.143 23 N -0.322 5.322 24 O 0.101 5.899 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.176 0.824 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 -13.770 -10.072 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.205 4.205 5 C -0.167 4.167 6 C 0.366 3.634 7 O -0.406 6.406 8 N -0.301 5.301 9 C 0.121 3.879 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.024 4.024 19 C -0.080 4.080 20 C -0.201 4.201 21 C -0.192 4.192 22 C -0.201 4.201 23 N -0.028 5.028 24 O 0.032 5.968 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.193 0.807 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.278 -12.704 -10.299 19.316 hybrid contribution 1.006 -0.242 0.960 1.412 sum -9.271 -12.946 -9.339 18.460 Atomic orbital electron populations 1.21801 0.93618 1.02522 1.02971 1.20084 0.96532 0.86507 1.04655 1.24370 1.03276 0.97003 0.85847 1.22415 1.04823 0.91979 1.01266 1.23936 1.04561 0.98409 0.89761 1.16951 0.78908 0.81261 0.86279 1.90755 1.55817 1.81196 1.12795 1.48072 1.57443 1.18108 1.06507 1.19565 0.93654 0.82200 0.92458 1.21445 0.93720 1.05455 1.36185 0.92517 1.24905 0.98717 0.95022 0.95270 1.69922 1.36243 1.09231 1.37805 0.86504 0.84947 0.78357 0.77674 1.20604 1.21038 1.19920 1.22086 0.96976 1.02767 0.80532 1.20859 0.95764 0.96090 0.95254 1.22029 1.00794 0.95211 1.02031 1.21759 1.01411 1.01476 0.94516 1.22116 0.96836 1.00211 1.00897 1.74232 1.14740 0.98125 1.15746 1.84787 1.60396 1.17893 1.33720 0.91414 0.91981 0.92050 0.89400 0.88549 0.80690 0.93461 0.93762 0.92684 0.90371 0.88238 0.92350 0.93752 0.91424 0.92669 0.92975 0.92621 0.93351 0.93525 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.04 -0.28 6.50 -27.89 -0.18 -0.46 16 3 C -0.04 -0.48 6.73 -35.35 -0.24 -0.72 16 4 C -0.18 -2.65 10.93 -39.08 -0.43 -3.08 16 5 C -0.01 -0.14 5.90 -82.52 -0.49 -0.63 16 6 C 0.58 13.11 6.33 -12.11 -0.08 13.04 16 7 O -0.53 -13.76 16.51 5.37 0.09 -13.67 16 8 N -0.57 -12.83 1.98 -175.99 -0.35 -13.18 16 9 C 0.24 6.33 3.97 -5.19 -0.02 6.31 16 10 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.10 1.88 4.53 -4.04 -0.02 1.86 16 19 C -0.08 -1.26 0.85 -154.50 -0.13 -1.39 16 20 C -0.14 -2.47 7.05 37.16 0.26 -2.20 16 21 C -0.13 -1.77 8.47 37.16 0.31 -1.46 16 22 C -0.14 -2.26 7.03 37.16 0.26 -2.00 16 23 N -0.32 -5.14 5.62 33.30 0.19 -4.95 16 24 O 0.10 1.35 11.18 17.24 0.19 1.55 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.05 1.24 5.68 -51.93 -0.29 0.95 16 32 H 0.04 1.32 7.35 -51.93 -0.38 0.93 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 35 H 0.10 1.78 4.55 -53.08 -0.24 1.54 16 36 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.35 5.91 -51.93 -0.31 1.04 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.87 6.60 -51.92 -0.34 0.53 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.99 5.33 -51.93 -0.28 0.72 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -32.57 349.40 -6.56 -39.13 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.87 Total: -0.24 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.79 Total: -5.14 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.57 Total: -43.94 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.28 Total: -12.13 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.57 -6.56 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888903270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.766 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds