Wall clock time and date at job start Tue Mar 31 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47226 * 2 1 4 4 C 1.35316 * 126.66451 * 90.26636 * 3 2 1 5 5 C 1.42270 * 103.92199 * 180.10701 * 4 3 2 6 6 C 1.48331 * 126.94068 * 179.90466 * 5 4 3 7 7 O 1.21491 * 119.99864 * 354.54235 * 6 5 4 8 8 N 1.34775 * 120.00037 * 174.53846 * 6 5 4 9 9 C 1.46498 * 120.00152 * 185.64695 * 8 6 5 10 10 C 1.50703 * 109.47218 * 90.00033 * 9 8 6 11 11 H 1.08001 * 119.99649 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00508 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99800 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47141 * 89.99836 * 14 12 10 16 16 H 1.48498 * 109.47145 * 209.99928 * 14 12 10 17 17 H 1.48506 * 109.46886 * 330.00109 * 14 12 10 18 18 C 1.46500 * 119.99951 * 5.64903 * 8 6 5 19 19 C 1.53004 * 109.47030 * 92.88688 * 18 8 6 20 20 C 1.52997 * 109.47360 * 55.57637 * 19 18 8 21 21 C 1.53004 * 109.47131 * 175.57914 * 19 18 8 22 22 C 1.53003 * 109.47015 * 295.57418 * 19 18 8 23 23 N 1.30990 * 106.12211 * 359.64488 * 5 4 3 24 24 O 1.20903 * 111.44078 * 0.22552 * 23 5 4 25 25 H 1.08995 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00242 * 1 2 3 27 27 H 1.09000 * 109.47234 * 59.99833 * 1 2 3 28 28 H 1.09000 * 109.47121 * 239.99758 * 2 1 3 29 29 H 1.09000 * 109.47234 * 120.00167 * 2 1 3 30 30 H 1.08002 * 128.04325 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47528 * 209.99961 * 9 8 6 32 32 H 1.09004 * 109.47264 * 330.00429 * 9 8 6 33 33 H 0.96993 * 120.00616 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.46962 * 212.88009 * 18 8 6 35 35 H 1.08996 * 109.47236 * 332.88683 * 18 8 6 36 36 H 1.09001 * 109.46958 * 60.00131 * 20 19 18 37 37 H 1.08996 * 109.47255 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47001 * 300.00121 * 20 19 18 39 39 H 1.09000 * 109.46975 * 59.99567 * 21 19 18 40 40 H 1.08996 * 109.47288 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47080 * 299.99803 * 21 19 18 42 42 H 1.09008 * 109.46643 * 63.78022 * 22 19 18 43 43 H 1.08996 * 109.47134 * 183.78057 * 22 19 18 44 44 H 1.08997 * 109.47347 * 303.78495 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3064 2.1809 1.0854 5 6 2.7390 3.4196 0.5354 6 6 3.1662 4.6267 1.2842 7 8 3.0752 4.6541 2.4954 8 7 3.6554 5.6931 0.6209 9 6 4.1920 6.8354 1.3648 10 6 5.6647 6.6291 1.6089 11 1 6.1523 5.7364 1.2458 12 6 6.3895 7.5798 2.2957 13 7 5.7957 8.6665 2.7382 14 14 8.2152 7.3243 2.5976 15 1 8.9893 7.9062 1.4718 16 1 8.6057 7.9929 3.8647 17 1 8.5019 5.8705 2.6961 18 6 3.6507 5.7099 -0.8440 19 6 2.3728 6.3881 -1.3421 20 6 2.2636 7.7847 -0.7269 21 6 2.4184 6.5047 -2.8670 22 6 1.1586 5.5531 -0.9306 23 7 2.6891 3.2771 -0.7657 24 8 2.2996 2.1751 -1.0750 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2157 1.9108 2.1272 31 1 4.0438 7.7475 0.7866 32 1 3.6741 6.9226 2.3200 33 1 6.3056 9.3355 3.2211 34 1 4.5190 6.2620 -1.2038 35 1 3.6892 4.6873 -1.2192 36 1 3.1286 8.3795 -1.0201 37 1 1.3535 8.2680 -1.0821 38 1 2.2311 7.7016 0.3594 39 1 2.4963 5.5097 -3.3052 40 1 1.5079 6.9874 -3.2219 41 1 3.2835 7.0995 -3.1602 42 1 1.0880 5.5261 0.1569 43 1 0.2538 6.0001 -1.3424 44 1 1.2690 4.5383 -1.3128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888903270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:12 Heat of formation + Delta-G solvation = 7.761673 kcal Electronic energy + Delta-G solvation = -25176.618257 eV Core-core repulsion = 21711.061478 eV Total energy + Delta-G solvation = -3465.556779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.14873 -41.08934 -38.58527 -35.87718 -35.73765 -34.99105 -34.27678 -31.23981 -29.92344 -28.26078 -28.16589 -27.25729 -26.18559 -24.94618 -24.18441 -22.89928 -20.56526 -19.76189 -18.98366 -18.66668 -18.31109 -17.66245 -17.20561 -16.56042 -16.13785 -15.54550 -15.39134 -15.13440 -15.05038 -14.89450 -14.45353 -14.31016 -14.29175 -13.73696 -13.49780 -13.27059 -13.09532 -13.02590 -12.85300 -12.61092 -12.59012 -12.53148 -12.34210 -12.20330 -12.01251 -11.81690 -11.78752 -11.63406 -11.38336 -11.27285 -11.11085 -10.65980 -10.32385 -9.52069 -8.26709 -6.42187 0.11057 0.71810 1.33248 1.36052 1.46563 1.89607 2.12836 2.18837 2.36466 2.89506 3.02900 3.48198 3.78791 3.83372 3.94465 4.03754 4.07257 4.21783 4.40077 4.46874 4.50106 4.56008 4.70612 4.72530 4.74063 4.86004 4.92882 4.96854 5.00823 5.02510 5.04775 5.10533 5.14810 5.16579 5.20738 5.27276 5.36250 5.44435 5.48088 5.52281 5.76340 6.00425 6.51588 6.65062 7.00003 7.16338 7.30635 8.80453 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.005156 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.262898 B = 5428.904457 C = 6483.229927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 C -0.008 4.008 4 C -0.201 4.201 5 C -0.039 4.039 6 C 0.576 3.424 7 O -0.581 6.581 8 N -0.576 5.576 9 C 0.260 3.740 10 C -0.551 4.551 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.275 1.275 18 C 0.098 3.902 19 C -0.075 4.075 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.134 4.134 23 N -0.325 5.325 24 O 0.124 5.876 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.182 0.818 31 H 0.043 0.957 32 H -0.002 1.002 33 H 0.269 0.731 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -16.130 -12.475 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.072 4.072 4 C -0.223 4.223 5 C -0.196 4.196 6 C 0.362 3.638 7 O -0.461 6.461 8 N -0.304 5.304 9 C 0.139 3.861 10 C -0.590 4.590 11 H 0.066 0.934 12 C -0.187 4.187 13 N -0.563 5.563 14 Si 0.792 3.208 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.199 1.199 18 C -0.025 4.025 19 C -0.076 4.076 20 C -0.196 4.196 21 C -0.184 4.184 22 C -0.191 4.191 23 N -0.027 5.027 24 O 0.049 5.951 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.199 0.801 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.487 -15.037 -12.742 22.326 hybrid contribution 0.976 0.406 1.676 1.981 sum -9.511 -14.631 -11.066 20.664 Atomic orbital electron populations 1.21816 0.92777 1.03945 1.02302 1.20428 0.96992 0.83267 1.06910 1.25096 1.00249 0.97985 0.83833 1.22570 1.05974 0.91184 1.02620 1.23362 1.07635 0.97814 0.90778 1.17504 0.77910 0.82266 0.86082 1.90699 1.57927 1.82376 1.15066 1.48023 1.57186 1.17244 1.07988 1.19023 0.92433 0.83775 0.90829 1.21684 0.94844 1.05445 1.37020 0.93371 1.25817 1.03738 0.94519 0.94585 1.70038 1.38229 1.09966 1.38056 0.85411 0.78911 0.78212 0.78254 1.18749 1.20176 1.19946 1.22332 0.98212 1.03831 0.78112 1.20867 0.94442 0.94850 0.97490 1.21957 1.01642 0.96372 0.99649 1.21705 1.02620 1.02623 0.91437 1.22028 0.97508 1.00760 0.98819 1.74123 1.14698 0.99375 1.14552 1.84756 1.59082 1.17140 1.34095 0.88983 0.93069 0.92381 0.86818 0.86610 0.80109 0.93878 0.98418 0.92213 0.91420 0.86938 0.93220 0.91223 0.95229 0.91382 0.90966 0.92363 0.96580 0.91328 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.65 16 2 C -0.04 -0.38 6.50 29.85 0.19 -0.19 16 3 C -0.01 -0.17 6.73 25.01 0.17 0.00 16 4 C -0.20 -5.73 10.93 22.60 0.25 -5.48 16 5 C -0.04 -1.45 5.90 42.96 0.25 -1.19 16 6 C 0.58 27.58 6.33 86.93 0.55 28.13 16 7 O -0.58 -32.59 16.51 -3.69 -0.06 -32.65 16 8 N -0.58 -27.46 1.98 -829.00 -1.64 -29.11 16 9 C 0.26 14.75 3.97 85.63 0.34 15.09 16 10 C -0.55 -33.22 9.39 25.60 0.24 -32.98 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.77 5.46 84.66 0.46 1.23 16 13 N -0.92 -56.75 13.29 21.45 0.28 -56.46 16 14 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 15 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 18 C 0.10 3.75 4.53 86.38 0.39 4.14 16 19 C -0.08 -2.41 0.85 -52.18 -0.04 -2.45 16 20 C -0.14 -4.90 7.05 71.98 0.51 -4.40 16 21 C -0.13 -3.03 8.47 71.98 0.61 -2.42 16 22 C -0.13 -4.14 7.03 71.98 0.51 -3.63 16 23 N -0.32 -10.03 5.62 -49.51 -0.28 -10.30 16 24 O 0.12 2.98 11.18 71.86 0.80 3.78 16 25 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.18 4.83 8.06 -2.91 -0.02 4.80 16 31 H 0.04 2.44 5.68 -2.39 -0.01 2.43 16 32 H 0.00 -0.15 7.35 -2.39 -0.02 -0.17 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.07 2.69 8.09 -2.38 -0.02 2.67 16 35 H 0.11 4.02 4.55 -4.65 -0.02 4.00 16 36 H 0.05 1.80 7.82 -2.39 -0.02 1.78 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.03 1.24 5.91 -2.39 -0.01 1.23 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.02 0.57 6.60 -2.38 -0.02 0.56 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.11 5.33 -2.39 -0.01 2.09 16 Total: -1.00 -76.00 349.40 7.25 -68.76 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.98 Total: 12.79 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.14 Total: -4.81 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -1.64 Total: -95.87 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: 0.74 Total: -28.86 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.00 7.25 -68.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888903270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.517 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds