Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 C 1.53005 * 109.47207 * 240.00070 * 2 1 3 5 5 C 1.50701 * 109.47556 * 119.99719 * 2 1 3 6 6 C 1.34336 * 126.16055 * 74.99545 * 5 2 1 7 7 O 1.34748 * 107.10925 * 180.02562 * 6 5 2 8 8 C 1.33972 * 107.76006 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.61983 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46700 * 270.01888 * 9 8 7 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 C 1.53003 * 109.46624 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46813 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47183 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99731 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00455 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99573 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47390 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47183 * 120.00029 * 20 18 16 23 23 H 1.48500 * 109.47478 * 240.00012 * 20 18 16 24 24 N 1.30256 * 108.75680 * 0.26062 * 8 7 6 25 25 H 1.09012 * 109.47156 * 300.00003 * 1 2 3 26 26 H 1.09002 * 109.47343 * 59.99894 * 1 2 3 27 27 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47303 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46668 * 300.00160 * 3 2 1 30 30 H 1.08995 * 109.46893 * 60.00183 * 3 2 1 31 31 H 1.08998 * 109.46726 * 299.99867 * 4 2 1 32 32 H 1.09002 * 109.46940 * 59.99789 * 4 2 1 33 33 H 1.08995 * 109.46804 * 179.97438 * 4 2 1 34 34 H 1.07994 * 126.44433 * 359.97438 * 6 5 2 35 35 H 1.08998 * 109.46743 * 150.02364 * 9 8 7 36 36 H 1.08994 * 109.47542 * 30.02223 * 9 8 7 37 37 H 0.97005 * 120.00261 * 0.02562 * 10 9 8 38 38 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 39 39 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 40 40 H 1.09001 * 109.46782 * 299.99104 * 14 13 11 41 41 H 1.08993 * 109.47555 * 59.99547 * 14 13 11 42 42 H 1.08998 * 109.47446 * 299.99771 * 15 14 13 43 43 H 1.09001 * 109.47095 * 59.99865 * 15 14 13 44 44 H 0.97001 * 120.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 2.0319 -2.0380 1.4350 7 8 2.5634 -2.2514 2.6547 8 6 2.8794 -1.0589 3.1771 9 6 3.5018 -0.8307 4.5305 10 7 2.4455 -0.6709 5.5329 11 6 2.7683 -0.4543 6.8235 12 8 3.9333 -0.3914 7.1547 13 6 1.6817 -0.2838 7.8536 14 6 2.3135 -0.0522 9.2277 15 6 1.2103 0.1216 10.2735 16 6 1.8326 0.3492 11.6270 17 1 2.9074 0.3684 11.7308 18 6 1.0298 0.5339 12.7327 19 7 -0.2790 0.5109 12.6061 20 14 1.8011 0.8167 14.4102 21 1 3.2807 0.7980 14.2843 22 1 1.3664 2.1344 14.9391 23 1 1.3696 -0.2570 15.3409 24 7 2.5555 -0.1290 2.3245 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2494 34 1 1.6724 -2.7924 0.7509 35 1 4.1143 0.0704 4.5013 36 1 4.1251 -1.6855 4.7926 37 1 1.5137 -0.7208 5.2679 38 1 1.0623 0.5734 7.5898 39 1 1.0652 -1.1822 7.8835 40 1 2.9332 -0.9091 9.4917 41 1 2.9298 0.8463 9.1974 42 1 0.5909 0.9786 10.0093 43 1 0.5938 -0.7768 10.3038 44 1 -0.8439 0.6405 13.3840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889553221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -46.548496 kcal Electronic energy + Delta-G solvation = -22607.009718 eV Core-core repulsion = 19139.097874 eV Total energy + Delta-G solvation = -3467.911844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.76527 -39.53158 -37.77578 -35.33258 -34.27043 -34.12049 -32.06789 -30.66924 -28.43400 -27.72791 -27.63291 -26.40874 -23.68223 -23.44702 -21.70046 -20.74604 -19.93859 -19.61370 -17.66267 -17.11254 -16.84232 -16.07593 -15.76337 -15.71698 -15.33956 -14.65484 -14.50829 -14.42464 -14.18280 -13.93225 -13.62217 -13.32439 -12.83079 -12.71923 -12.46678 -12.26736 -12.08052 -11.81078 -11.70338 -11.63224 -11.38001 -11.33108 -11.16788 -10.81177 -10.78681 -10.59846 -10.50594 -9.83976 -9.67394 -9.34207 -9.21154 -9.13711 -8.97027 -8.30955 -5.96364 -3.97573 0.99666 2.18228 2.33615 2.84262 3.27041 3.34899 3.42176 3.47964 3.53433 4.15811 4.34855 4.50738 4.54266 4.66601 4.75999 4.96469 5.11350 5.13677 5.20559 5.31724 5.34219 5.38279 5.39833 5.48965 5.51109 5.53308 5.56830 5.64733 5.71162 5.71817 5.86982 5.95592 6.04667 6.19361 6.27525 6.73626 6.93693 7.17295 7.37223 7.44508 7.72759 7.85175 8.04482 8.33387 8.48434 9.09822 9.66354 11.15193 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033884 B = 0.002133 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.155047 B =13124.403126 C =13429.238866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.011 3.989 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.001 4.001 6 C -0.067 4.067 7 O -0.195 6.195 8 C 0.175 3.825 9 C 0.220 3.780 10 N -0.738 5.738 11 C 0.519 3.481 12 O -0.533 6.533 13 C -0.137 4.137 14 C -0.095 4.095 15 C 0.019 3.981 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.454 5.454 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.214 0.786 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -4.364 -30.675 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 C -0.189 4.189 4 C -0.199 4.199 5 C -0.122 4.122 6 C -0.138 4.138 7 O -0.080 6.080 8 C -0.032 4.032 9 C 0.096 3.904 10 N -0.394 5.394 11 C 0.307 3.693 12 O -0.408 6.408 13 C -0.177 4.177 14 C -0.133 4.133 15 C -0.018 4.018 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 N -0.184 5.184 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.238 0.762 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.354 -3.705 -30.165 30.483 hybrid contribution -0.347 -0.715 0.498 0.938 sum 2.007 -4.420 -29.667 30.061 Atomic orbital electron populations 1.21908 0.93096 1.02127 1.02565 1.18968 0.95482 0.95577 0.88952 1.21723 1.01332 0.93808 1.02054 1.21935 1.01497 1.00065 0.96382 1.21719 1.03115 0.91067 0.96286 1.24783 1.03893 0.98825 0.86326 1.84489 1.60179 1.35332 1.27989 1.26184 1.01245 0.77567 0.98243 1.19439 0.89450 1.04464 0.77057 1.46133 1.09529 1.76200 1.07510 1.21320 0.91460 0.74535 0.81971 1.90699 1.20720 1.49239 1.80152 1.21857 0.96678 1.03750 0.95366 1.21464 0.99514 1.01495 0.90872 1.19143 0.93120 0.97040 0.92465 1.21312 0.93148 1.48343 0.92685 0.92488 1.25030 0.94846 0.95541 0.99206 1.69972 1.03095 1.50728 1.29947 0.86532 0.79594 0.77685 0.84195 1.19671 1.21065 1.21070 1.70379 1.13948 1.32837 1.01257 0.92132 0.91666 0.92508 0.92464 0.92516 0.91654 0.92480 0.91526 0.92254 0.76956 0.87275 0.88637 0.76236 0.89111 0.89187 0.92611 0.92574 0.96559 0.96584 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.46 37.15 0.31 -0.53 16 2 C 0.01 0.08 0.95 -155.66 -0.15 -0.07 16 3 C -0.13 -1.00 8.05 37.16 0.30 -0.70 16 4 C -0.14 -0.71 8.19 37.16 0.30 -0.41 16 5 C 0.00 -0.01 5.53 -82.81 -0.46 -0.47 16 6 C -0.07 -0.54 11.45 29.36 0.34 -0.20 16 7 O -0.19 -1.97 10.78 5.36 0.06 -1.92 16 8 C 0.17 1.88 7.71 -12.95 -0.10 1.78 16 9 C 0.22 2.40 6.30 -5.19 -0.03 2.36 16 10 N -0.74 -8.78 5.55 -61.48 -0.34 -9.12 16 11 C 0.52 8.12 7.83 -10.98 -0.09 8.03 16 12 O -0.53 -10.29 15.98 5.56 0.09 -10.20 16 13 C -0.14 -2.23 5.70 -27.88 -0.16 -2.39 16 14 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 N -0.45 -5.13 10.67 -7.35 -0.08 -5.21 16 25 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.22 7.51 -51.93 -0.39 -0.17 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.21 0.90 7.66 -52.49 -0.40 0.50 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 4.04 8.46 -40.82 -0.35 3.69 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -34.15 371.08 -6.80 -40.95 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.44 Total: -2.52 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.40 Total: -8.20 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.32 Total: -40.79 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.15 Total: -12.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.15 -6.80 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889553221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.594 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds