Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47169 * 2 1 4 4 C 1.53005 * 109.47207 * 240.00070 * 2 1 3 5 5 C 1.50701 * 109.47556 * 119.99719 * 2 1 3 6 6 C 1.34336 * 126.16055 * 74.99545 * 5 2 1 7 7 O 1.34748 * 107.10925 * 180.02562 * 6 5 2 8 8 C 1.33972 * 107.76006 * 0.02562 * 7 6 5 9 9 C 1.50699 * 125.61983 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46700 * 270.01888 * 9 8 7 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 C 1.53003 * 109.46624 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46813 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47183 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99731 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00455 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99573 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47390 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47183 * 120.00029 * 20 18 16 23 23 H 1.48500 * 109.47478 * 240.00012 * 20 18 16 24 24 N 1.30256 * 108.75680 * 0.26062 * 8 7 6 25 25 H 1.09012 * 109.47156 * 300.00003 * 1 2 3 26 26 H 1.09002 * 109.47343 * 59.99894 * 1 2 3 27 27 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47303 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46668 * 300.00160 * 3 2 1 30 30 H 1.08995 * 109.46893 * 60.00183 * 3 2 1 31 31 H 1.08998 * 109.46726 * 299.99867 * 4 2 1 32 32 H 1.09002 * 109.46940 * 59.99789 * 4 2 1 33 33 H 1.08995 * 109.46804 * 179.97438 * 4 2 1 34 34 H 1.07994 * 126.44433 * 359.97438 * 6 5 2 35 35 H 1.08998 * 109.46743 * 150.02364 * 9 8 7 36 36 H 1.08994 * 109.47542 * 30.02223 * 9 8 7 37 37 H 0.97005 * 120.00261 * 0.02562 * 10 9 8 38 38 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 39 39 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 40 40 H 1.09001 * 109.46782 * 299.99104 * 14 13 11 41 41 H 1.08993 * 109.47555 * 59.99547 * 14 13 11 42 42 H 1.08998 * 109.47446 * 299.99771 * 15 14 13 43 43 H 1.09001 * 109.47095 * 59.99865 * 15 14 13 44 44 H 0.97001 * 120.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 2.0319 -2.0380 1.4350 7 8 2.5634 -2.2514 2.6547 8 6 2.8794 -1.0589 3.1771 9 6 3.5018 -0.8307 4.5305 10 7 2.4455 -0.6709 5.5329 11 6 2.7683 -0.4543 6.8235 12 8 3.9333 -0.3914 7.1547 13 6 1.6817 -0.2838 7.8536 14 6 2.3135 -0.0522 9.2277 15 6 1.2103 0.1216 10.2735 16 6 1.8326 0.3492 11.6270 17 1 2.9074 0.3684 11.7308 18 6 1.0298 0.5339 12.7327 19 7 -0.2790 0.5109 12.6061 20 14 1.8011 0.8167 14.4102 21 1 3.2807 0.7980 14.2843 22 1 1.3664 2.1344 14.9391 23 1 1.3696 -0.2570 15.3409 24 7 2.5555 -0.1290 2.3245 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2494 34 1 1.6724 -2.7924 0.7509 35 1 4.1143 0.0704 4.5013 36 1 4.1251 -1.6855 4.7926 37 1 1.5137 -0.7208 5.2679 38 1 1.0623 0.5734 7.5898 39 1 1.0652 -1.1822 7.8835 40 1 2.9332 -0.9091 9.4917 41 1 2.9298 0.8463 9.1974 42 1 0.5909 0.9786 10.0093 43 1 0.5938 -0.7768 10.3038 44 1 -0.8439 0.6405 13.3840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889553221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -70.553013 kcal Electronic energy + Delta-G solvation = -22608.050632 eV Core-core repulsion = 19139.097874 eV Total energy + Delta-G solvation = -3468.952758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.49142 -40.79949 -38.33327 -36.48417 -35.98707 -35.01833 -34.02974 -31.61409 -29.85470 -28.49441 -28.13285 -27.43040 -25.51604 -24.09425 -22.61403 -22.26200 -21.31982 -20.34752 -18.74451 -18.22654 -17.99591 -17.62212 -16.91605 -16.76454 -16.47430 -16.09944 -15.45742 -15.15616 -15.04772 -14.98216 -14.60426 -14.39515 -14.19726 -13.91358 -13.74421 -13.25158 -13.07938 -12.97711 -12.62253 -12.57139 -12.51486 -12.39257 -12.35600 -12.18838 -11.93632 -11.77306 -11.54181 -11.47709 -11.45744 -11.25618 -10.91087 -10.53980 -10.30545 -9.83622 -8.19601 -6.29203 0.26512 1.39971 1.40294 1.43124 1.54233 1.57678 1.62938 2.28070 2.42917 2.79471 3.13461 3.55750 3.75545 3.85989 4.03966 4.05549 4.19969 4.25344 4.28079 4.36406 4.40753 4.63585 4.77438 4.80457 4.80850 4.84496 4.88973 4.94647 4.98536 5.02598 5.03865 5.10944 5.15559 5.16884 5.24509 5.39342 5.41260 5.44878 5.56073 5.77153 5.88381 6.27851 6.37857 6.64915 6.86735 7.13553 7.39358 8.92130 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033884 B = 0.002133 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.155047 B =13124.403126 C =13429.238866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.010 3.990 3 C -0.130 4.130 4 C -0.138 4.138 5 C -0.021 4.021 6 C -0.054 4.054 7 O -0.202 6.202 8 C 0.162 3.838 9 C 0.224 3.776 10 N -0.719 5.719 11 C 0.526 3.474 12 O -0.574 6.574 13 C -0.129 4.129 14 C -0.083 4.083 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 N -0.475 5.475 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.000 1.000 43 H 0.002 0.998 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -5.198 -32.209 32.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 C -0.187 4.187 4 C -0.195 4.195 5 C -0.141 4.141 6 C -0.124 4.124 7 O -0.087 6.087 8 C -0.045 4.045 9 C 0.100 3.900 10 N -0.374 5.374 11 C 0.314 3.686 12 O -0.453 6.453 13 C -0.169 4.169 14 C -0.121 4.121 15 C -0.013 4.013 16 C -0.583 4.583 17 H 0.071 0.929 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.201 1.201 24 N -0.206 5.206 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.925 -4.548 -31.739 32.121 hybrid contribution -0.268 -0.454 0.870 1.017 sum 1.657 -5.002 -30.869 31.316 Atomic orbital electron populations 1.21891 0.92281 1.02861 1.02348 1.19085 0.96065 0.94916 0.89005 1.21698 1.00478 0.94717 1.01832 1.21923 1.00957 1.00986 0.95657 1.22161 1.03590 0.91852 0.96511 1.25537 1.01912 0.99335 0.85625 1.84489 1.60313 1.35036 1.28896 1.25924 1.02447 0.77890 0.98209 1.19392 0.88992 1.04594 0.77035 1.45878 1.10597 1.74402 1.06521 1.21015 0.90383 0.74295 0.82893 1.90690 1.22080 1.51512 1.80998 1.21682 0.96889 1.05540 0.92772 1.21178 0.97838 1.00356 0.92761 1.19036 0.93841 0.95486 0.92920 1.21731 0.93217 1.48852 0.94511 0.92946 1.25924 0.95372 0.95038 1.03367 1.70073 1.04383 1.51190 1.31365 0.85436 0.78795 0.77971 0.79084 1.19151 1.20171 1.20106 1.70355 1.14307 1.33688 1.02242 0.93981 0.90255 0.91290 0.93718 0.90822 0.93738 0.90759 0.90272 0.93103 0.73204 0.87700 0.88014 0.74868 0.87385 0.87151 0.93739 0.93893 0.98118 0.98006 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.46 71.98 0.61 -0.76 16 2 C 0.01 0.12 0.95 -52.93 -0.05 0.07 16 3 C -0.13 -1.91 8.05 71.98 0.58 -1.33 16 4 C -0.14 -1.03 8.19 71.98 0.59 -0.44 16 5 C -0.02 -0.35 5.53 41.26 0.23 -0.12 16 6 C -0.05 -0.73 11.45 66.93 0.77 0.04 16 7 O -0.20 -3.77 10.78 -3.74 -0.04 -3.81 16 8 C 0.16 3.35 7.71 88.34 0.68 4.03 16 9 C 0.22 4.77 6.30 85.63 0.54 5.31 16 10 N -0.72 -16.46 5.55 -466.79 -2.59 -19.05 16 11 C 0.53 16.19 7.83 87.65 0.69 16.88 16 12 O -0.57 -22.33 15.98 -3.04 -0.05 -22.38 16 13 C -0.13 -4.13 5.70 29.85 0.17 -3.96 16 14 C -0.08 -3.63 4.44 30.60 0.14 -3.49 16 15 C 0.02 1.29 4.97 29.85 0.15 1.43 16 16 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 17 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 18 C 0.00 0.04 5.46 84.66 0.46 0.51 16 19 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 20 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 N -0.48 -10.51 10.67 -291.97 -3.11 -13.62 16 25 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.82 8.09 -2.39 -0.02 0.80 16 31 H 0.07 0.30 7.51 -2.39 -0.02 0.28 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.25 1.12 7.66 -2.91 -0.02 1.10 16 35 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 7.71 8.46 -92.70 -0.78 6.92 16 38 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 41 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -74.47 371.08 2.49 -71.98 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.19 Total: 9.55 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.78 Total: -13.73 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -5.42 Total: -89.08 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.09 Total: -26.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.47 2.49 -71.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889553221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.429 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds