Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47065 * 2 1 4 4 C 1.35319 * 126.66947 * 90.28892 * 3 2 1 5 5 C 1.42267 * 103.92585 * 180.09051 * 4 3 2 6 6 C 1.48333 * 126.93954 * 179.91003 * 5 4 3 7 7 O 1.21489 * 119.99683 * 353.92045 * 6 5 4 8 8 N 1.34772 * 119.99896 * 173.91868 * 6 5 4 9 9 C 1.46502 * 120.00002 * 173.77383 * 8 6 5 10 10 C 1.50696 * 109.46940 * 276.66691 * 9 8 6 11 11 H 1.08011 * 120.00101 * 4.05571 * 10 9 8 12 12 C 1.37879 * 120.00157 * 184.05777 * 10 9 8 13 13 N 1.31511 * 119.99635 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00320 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46856 * 89.99841 * 14 12 10 16 16 H 1.48497 * 109.47375 * 210.00363 * 14 12 10 17 17 H 1.48505 * 109.47054 * 330.00531 * 14 12 10 18 18 C 1.46507 * 120.00255 * 353.76837 * 8 6 5 19 19 C 1.53001 * 109.47011 * 184.19013 * 18 8 6 20 20 C 1.53002 * 109.46992 * 304.19149 * 18 8 6 21 21 C 1.53004 * 109.46734 * 64.19095 * 18 8 6 22 22 C 1.53001 * 109.47098 * 80.76084 * 21 18 8 23 23 N 1.30990 * 106.12277 * 359.64240 * 5 4 3 24 24 O 1.20900 * 111.43850 * 0.23165 * 23 5 4 25 25 H 1.08996 * 109.47307 * 60.00023 * 1 2 3 26 26 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47011 * 299.99479 * 1 2 3 28 28 H 1.09006 * 109.46787 * 239.99993 * 2 1 3 29 29 H 1.09004 * 109.47224 * 120.00287 * 2 1 3 30 30 H 1.07996 * 128.03205 * 359.96377 * 4 3 2 31 31 H 1.09001 * 109.47112 * 36.66185 * 9 8 6 32 32 H 1.08997 * 109.47135 * 156.66663 * 9 8 6 33 33 H 0.97003 * 119.99670 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.46964 * 60.00609 * 19 18 8 35 35 H 1.08998 * 109.46717 * 180.02562 * 19 18 8 36 36 H 1.08997 * 109.47054 * 300.00137 * 19 18 8 37 37 H 1.09000 * 109.47212 * 35.35662 * 20 18 8 38 38 H 1.09003 * 109.46249 * 155.35366 * 20 18 8 39 39 H 1.08992 * 109.46998 * 275.35143 * 20 18 8 40 40 H 1.08999 * 109.47032 * 200.76192 * 21 18 8 41 41 H 1.08996 * 109.47120 * 320.76248 * 21 18 8 42 42 H 1.08993 * 109.47120 * 184.96481 * 22 21 18 43 43 H 1.09001 * 109.47075 * 304.96992 * 22 21 18 44 44 H 1.09007 * 109.46894 * 64.96736 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0854 5 6 2.7395 3.4195 0.5354 6 6 3.1672 4.6264 1.2841 7 8 3.0660 4.6580 2.4944 8 7 3.6682 5.6879 0.6218 9 6 3.9631 6.9287 1.3429 10 6 2.7027 7.7439 1.4760 11 1 1.7625 7.3463 1.1231 12 6 2.7497 8.9975 2.0482 13 7 3.8946 9.4818 2.4774 14 14 1.1875 10.0085 2.2126 15 1 0.5398 9.7103 3.5152 16 1 1.5236 11.4534 2.1460 17 1 0.2572 9.6652 1.1071 18 6 3.9179 5.6011 -0.8192 19 6 4.5786 6.8943 -1.3010 20 6 4.8443 4.4176 -1.1058 21 6 2.5917 5.4008 -1.5554 22 6 1.8854 6.7492 -1.7099 23 7 2.6894 3.2770 -0.7658 24 8 2.2995 2.1752 -1.0750 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2163 1.9106 2.1271 31 1 4.3477 6.6900 2.3345 32 1 4.7093 7.5007 0.7916 33 1 3.9277 10.3639 2.8796 34 1 5.5233 7.0369 -0.7766 35 1 4.7639 6.8298 -2.3732 36 1 3.9186 7.7374 -1.0968 37 1 4.6192 3.6046 -0.4155 38 1 4.6923 4.0772 -2.1301 39 1 5.8810 4.7280 -0.9760 40 1 2.7837 4.9762 -2.5408 41 1 1.9581 4.7221 -0.9845 42 1 0.9023 6.5955 -2.1547 43 1 1.7725 7.2145 -0.7306 44 1 2.4784 7.3983 -2.3543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890024705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = 68.355165 kcal Electronic energy + Delta-G solvation = -25681.067473 eV Core-core repulsion = 22218.138225 eV Total energy + Delta-G solvation = -3462.929248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.94013 -39.67769 -36.88138 -34.93762 -33.91950 -32.95043 -31.84103 -30.34486 -29.73639 -28.08224 -26.25892 -24.62288 -24.04115 -23.21174 -22.59612 -21.61874 -20.35025 -17.80863 -17.53799 -17.31391 -16.56299 -15.73718 -15.29827 -14.74999 -14.69114 -14.47396 -14.20412 -13.85159 -13.56875 -13.40471 -13.04623 -12.82888 -12.68658 -12.28960 -12.10173 -11.95382 -11.76692 -11.59232 -11.44869 -11.25802 -11.07517 -10.97693 -10.81798 -10.49493 -10.40568 -10.28492 -10.03123 -9.93994 -9.81060 -9.46125 -9.19957 -8.80033 -8.41565 -7.64399 -6.04300 -4.07476 1.41316 1.94533 3.09010 3.31248 3.37437 3.39619 3.66407 3.85827 4.31802 4.43949 4.55212 4.84614 4.95734 5.09955 5.21632 5.22741 5.29073 5.41378 5.47338 5.52940 5.55138 5.58357 5.77937 5.88468 5.91748 6.01093 6.06140 6.13157 6.17878 6.22619 6.29805 6.44665 6.49579 6.65562 6.80840 6.88158 7.07434 7.13909 7.44536 7.54938 7.93068 8.21893 8.23616 8.40761 8.85322 9.02000 9.56201 11.03685 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.005214 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.818583 B = 5368.390698 C = 5789.354467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.179 4.179 5 C -0.031 4.031 6 C 0.583 3.417 7 O -0.526 6.526 8 N -0.570 5.570 9 C 0.239 3.761 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.168 3.832 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.121 4.121 22 C -0.169 4.169 23 N -0.297 5.297 24 O 0.099 5.901 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.174 0.826 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 -16.581 -9.405 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.113 4.113 4 C -0.201 4.201 5 C -0.188 4.188 6 C 0.367 3.633 7 O -0.402 6.402 8 N -0.302 5.302 9 C 0.120 3.880 10 C -0.557 4.557 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.083 3.917 19 C -0.205 4.205 20 C -0.211 4.211 21 C -0.159 4.159 22 C -0.226 4.226 23 N -0.002 5.002 24 O 0.028 5.972 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.192 0.808 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.164 -15.510 -9.651 18.395 hybrid contribution -0.991 0.389 0.857 1.367 sum -3.155 -15.120 -8.794 17.774 Atomic orbital electron populations 1.21808 0.93732 1.02445 1.03002 1.20061 0.96479 0.86652 1.04474 1.24350 1.04060 0.97002 0.85914 1.22376 1.04587 0.91977 1.01158 1.23819 1.06411 0.98674 0.89864 1.16793 0.79185 0.81097 0.86205 1.90750 1.55552 1.81135 1.12750 1.48316 1.60344 1.13676 1.07834 1.19497 0.97248 0.78727 0.92497 1.21397 0.94261 1.00435 1.39641 0.92200 1.24888 0.96193 0.97522 0.95287 1.69926 1.24554 1.18128 1.40683 0.86570 0.83463 0.79197 0.78673 1.20588 1.21157 1.19876 1.20400 0.94792 0.95689 0.80837 1.22177 1.01258 0.97500 0.99608 1.22484 0.98658 0.98011 1.01912 1.22412 0.96602 0.97139 0.99728 1.22184 0.98638 0.97682 1.04143 1.75336 1.13172 0.96262 1.15474 1.84850 1.60581 1.17802 1.33997 0.92068 0.91486 0.91988 0.89511 0.88678 0.80834 0.94478 0.93063 0.92747 0.92300 0.92606 0.89571 0.92571 0.91752 0.93127 0.91994 0.89775 0.94453 0.89576 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.04 -0.28 6.50 -27.89 -0.18 -0.46 16 3 C -0.05 -0.59 6.73 -35.35 -0.24 -0.83 16 4 C -0.18 -2.62 10.93 -39.07 -0.43 -3.05 16 5 C -0.03 -0.56 4.82 -82.52 -0.40 -0.96 16 6 C 0.58 13.20 6.94 -12.11 -0.08 13.12 16 7 O -0.53 -13.72 16.61 5.38 0.09 -13.64 16 8 N -0.57 -12.72 2.43 -161.10 -0.39 -13.11 16 9 C 0.24 6.22 4.52 -5.19 -0.02 6.19 16 10 C -0.52 -14.42 8.12 -34.44 -0.28 -14.70 16 11 H 0.06 1.69 6.37 -52.48 -0.33 1.36 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.17 3.10 0.81 -131.81 -0.11 2.99 16 19 C -0.15 -2.64 5.96 37.16 0.22 -2.42 16 20 C -0.15 -2.47 7.67 37.16 0.29 -2.18 16 21 C -0.12 -2.10 3.89 -26.73 -0.10 -2.21 16 22 C -0.17 -3.06 8.66 37.16 0.32 -2.74 16 23 N -0.30 -4.77 4.25 33.29 0.14 -4.62 16 24 O 0.10 1.34 11.18 17.23 0.19 1.54 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.04 1.09 7.55 -51.93 -0.39 0.70 16 32 H 0.05 1.33 5.42 -51.93 -0.28 1.05 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.73 5.76 -51.93 -0.30 1.43 16 37 H 0.06 0.96 4.68 -51.93 -0.24 0.72 16 38 H 0.06 0.92 7.57 -51.93 -0.39 0.53 16 39 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 40 H 0.06 0.96 7.60 -51.93 -0.39 0.57 16 41 H 0.09 1.59 4.17 -86.01 -0.36 1.23 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.87 5.27 -51.93 -0.27 1.59 16 44 H 0.05 0.86 6.74 -51.92 -0.35 0.51 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -31.73 339.02 -6.50 -38.24 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.62 Total: 1.30 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.74 Total: -6.24 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.49 Total: -43.11 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.28 Total: -12.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.73 -6.50 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890024705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.592 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds