Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47065 * 2 1 4 4 C 1.35319 * 126.66947 * 90.28892 * 3 2 1 5 5 C 1.42267 * 103.92585 * 180.09051 * 4 3 2 6 6 C 1.48333 * 126.93954 * 179.91003 * 5 4 3 7 7 O 1.21489 * 119.99683 * 353.92045 * 6 5 4 8 8 N 1.34772 * 119.99896 * 173.91868 * 6 5 4 9 9 C 1.46502 * 120.00002 * 173.77383 * 8 6 5 10 10 C 1.50696 * 109.46940 * 276.66691 * 9 8 6 11 11 H 1.08011 * 120.00101 * 4.05571 * 10 9 8 12 12 C 1.37879 * 120.00157 * 184.05777 * 10 9 8 13 13 N 1.31511 * 119.99635 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00320 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46856 * 89.99841 * 14 12 10 16 16 H 1.48497 * 109.47375 * 210.00363 * 14 12 10 17 17 H 1.48505 * 109.47054 * 330.00531 * 14 12 10 18 18 C 1.46507 * 120.00255 * 353.76837 * 8 6 5 19 19 C 1.53001 * 109.47011 * 184.19013 * 18 8 6 20 20 C 1.53002 * 109.46992 * 304.19149 * 18 8 6 21 21 C 1.53004 * 109.46734 * 64.19095 * 18 8 6 22 22 C 1.53001 * 109.47098 * 80.76084 * 21 18 8 23 23 N 1.30990 * 106.12277 * 359.64240 * 5 4 3 24 24 O 1.20900 * 111.43850 * 0.23165 * 23 5 4 25 25 H 1.08996 * 109.47307 * 60.00023 * 1 2 3 26 26 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47011 * 299.99479 * 1 2 3 28 28 H 1.09006 * 109.46787 * 239.99993 * 2 1 3 29 29 H 1.09004 * 109.47224 * 120.00287 * 2 1 3 30 30 H 1.07996 * 128.03205 * 359.96377 * 4 3 2 31 31 H 1.09001 * 109.47112 * 36.66185 * 9 8 6 32 32 H 1.08997 * 109.47135 * 156.66663 * 9 8 6 33 33 H 0.97003 * 119.99670 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.46964 * 60.00609 * 19 18 8 35 35 H 1.08998 * 109.46717 * 180.02562 * 19 18 8 36 36 H 1.08997 * 109.47054 * 300.00137 * 19 18 8 37 37 H 1.09000 * 109.47212 * 35.35662 * 20 18 8 38 38 H 1.09003 * 109.46249 * 155.35366 * 20 18 8 39 39 H 1.08992 * 109.46998 * 275.35143 * 20 18 8 40 40 H 1.08999 * 109.47032 * 200.76192 * 21 18 8 41 41 H 1.08996 * 109.47120 * 320.76248 * 21 18 8 42 42 H 1.08993 * 109.47120 * 184.96481 * 22 21 18 43 43 H 1.09001 * 109.47075 * 304.96992 * 22 21 18 44 44 H 1.09007 * 109.46894 * 64.96736 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0854 5 6 2.7395 3.4195 0.5354 6 6 3.1672 4.6264 1.2841 7 8 3.0660 4.6580 2.4944 8 7 3.6682 5.6879 0.6218 9 6 3.9631 6.9287 1.3429 10 6 2.7027 7.7439 1.4760 11 1 1.7625 7.3463 1.1231 12 6 2.7497 8.9975 2.0482 13 7 3.8946 9.4818 2.4774 14 14 1.1875 10.0085 2.2126 15 1 0.5398 9.7103 3.5152 16 1 1.5236 11.4534 2.1460 17 1 0.2572 9.6652 1.1071 18 6 3.9179 5.6011 -0.8192 19 6 4.5786 6.8943 -1.3010 20 6 4.8443 4.4176 -1.1058 21 6 2.5917 5.4008 -1.5554 22 6 1.8854 6.7492 -1.7099 23 7 2.6894 3.2770 -0.7658 24 8 2.2995 2.1752 -1.0750 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2163 1.9106 2.1271 31 1 4.3477 6.6900 2.3345 32 1 4.7093 7.5007 0.7916 33 1 3.9277 10.3639 2.8796 34 1 5.5233 7.0369 -0.7766 35 1 4.7639 6.8298 -2.3732 36 1 3.9186 7.7374 -1.0968 37 1 4.6192 3.6046 -0.4155 38 1 4.6923 4.0772 -2.1301 39 1 5.8810 4.7280 -0.9760 40 1 2.7837 4.9762 -2.5408 41 1 1.9581 4.7221 -0.9845 42 1 0.9023 6.5955 -2.1547 43 1 1.7725 7.2145 -0.7306 44 1 2.4784 7.3983 -2.3543 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890024705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = 49.600695 kcal Electronic energy + Delta-G solvation = -25681.880727 eV Core-core repulsion = 22218.138225 eV Total energy + Delta-G solvation = -3463.742503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.16504 -41.33698 -38.57062 -35.75800 -35.58604 -34.62529 -33.66234 -31.34365 -31.21892 -29.81616 -27.91983 -26.10439 -25.07347 -24.56429 -24.17381 -23.09239 -21.77682 -19.03914 -19.02633 -18.63670 -18.56862 -17.33765 -17.02041 -16.31520 -16.14692 -15.83552 -15.42530 -15.29634 -14.91728 -14.51783 -14.46182 -14.32572 -14.12675 -13.70766 -13.53079 -13.24837 -13.03406 -12.98219 -12.90518 -12.80669 -12.54084 -12.36934 -12.26902 -12.13768 -11.95364 -11.80878 -11.73124 -11.48638 -11.30742 -11.12633 -10.87276 -10.62233 -9.97945 -9.48701 -8.22157 -6.33314 0.16528 0.75837 1.33797 1.36073 1.45517 1.93655 2.15739 2.23703 2.38312 2.94336 3.08060 3.50225 3.78872 3.98750 4.03325 4.04934 4.13958 4.24469 4.40998 4.48805 4.51852 4.66451 4.67426 4.74456 4.78641 4.81170 4.88278 5.02203 5.05221 5.09918 5.10175 5.15490 5.18523 5.20023 5.24966 5.34699 5.40181 5.44074 5.56407 5.66866 5.83288 6.06495 6.58909 6.72674 7.05701 7.20451 7.36973 8.85383 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.005214 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.818583 B = 5368.390698 C = 5789.354467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.037 4.037 3 C -0.018 4.018 4 C -0.197 4.197 5 C -0.063 4.063 6 C 0.574 3.426 7 O -0.579 6.579 8 N -0.574 5.574 9 C 0.256 3.744 10 C -0.524 4.524 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.925 5.925 14 Si 0.957 3.043 15 H -0.282 1.282 16 H -0.273 1.273 17 H -0.266 1.266 18 C 0.159 3.841 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.166 4.166 23 N -0.295 5.295 24 O 0.121 5.879 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.179 0.821 31 H -0.010 1.010 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -18.780 -12.060 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 C -0.081 4.081 4 C -0.220 4.220 5 C -0.217 4.217 6 C 0.361 3.639 7 O -0.459 6.459 8 N -0.305 5.305 9 C 0.135 3.865 10 C -0.563 4.563 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.565 5.565 14 Si 0.781 3.219 15 H -0.208 1.208 16 H -0.198 1.198 17 H -0.190 1.190 18 C 0.076 3.924 19 C -0.200 4.200 20 C -0.202 4.202 21 C -0.152 4.152 22 C -0.223 4.223 23 N 0.003 4.997 24 O 0.044 5.956 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.196 0.804 31 H 0.008 0.992 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.278 -17.690 -12.343 21.818 hybrid contribution -0.646 0.951 1.626 1.991 sum -3.924 -16.740 -10.717 20.260 Atomic orbital electron populations 1.21823 0.93223 1.03835 1.02100 1.20385 0.96652 0.83550 1.06850 1.25031 1.01153 0.97977 0.83960 1.22523 1.05731 0.91262 1.02451 1.23237 1.09535 0.98076 0.90895 1.17384 0.78206 0.82282 0.86021 1.90694 1.57634 1.82494 1.15075 1.48332 1.60164 1.12455 1.09542 1.18993 0.96546 0.80273 0.90660 1.21525 0.94310 1.00881 1.39567 0.93192 1.25688 0.99311 0.98625 0.94840 1.70032 1.26484 1.18645 1.41329 0.85580 0.79700 0.78073 0.78503 1.20763 1.19805 1.19027 1.20767 0.96226 0.97023 0.78420 1.22121 0.99867 0.96186 1.01841 1.22407 0.98086 0.96512 1.03214 1.22380 0.95513 0.96569 1.00727 1.22110 0.99995 0.98110 1.02077 1.75260 1.12867 0.97333 1.14208 1.84817 1.59321 1.17130 1.34345 0.92613 0.88997 0.93314 0.86807 0.86630 0.80363 0.99183 0.93344 0.92444 0.93430 0.88824 0.92270 0.93569 0.88902 0.92819 0.88949 0.90915 0.92912 0.93716 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.04 -0.38 6.50 29.85 0.19 -0.18 16 3 C -0.02 -0.38 6.73 25.01 0.17 -0.21 16 4 C -0.20 -5.62 10.93 22.60 0.25 -5.38 16 5 C -0.06 -2.29 4.82 42.96 0.21 -2.08 16 6 C 0.57 27.31 6.94 86.93 0.60 27.92 16 7 O -0.58 -32.37 16.61 -3.68 -0.06 -32.43 16 8 N -0.57 -26.78 2.43 -781.89 -1.90 -28.68 16 9 C 0.26 14.18 4.52 85.63 0.39 14.57 16 10 C -0.52 -30.57 8.12 25.60 0.21 -30.36 16 11 H 0.05 2.96 6.37 -2.91 -0.02 2.95 16 12 C 0.01 0.84 5.46 84.66 0.46 1.30 16 13 N -0.92 -55.91 13.29 21.45 0.28 -55.62 16 14 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 C 0.16 5.81 0.81 3.60 0.00 5.81 16 19 C -0.14 -5.04 5.96 71.98 0.43 -4.61 16 20 C -0.14 -4.43 7.67 71.98 0.55 -3.88 16 21 C -0.11 -3.79 3.89 30.60 0.12 -3.67 16 22 C -0.17 -5.85 8.66 71.98 0.62 -5.23 16 23 N -0.30 -8.95 4.25 -49.51 -0.21 -9.16 16 24 O 0.12 2.89 11.18 71.82 0.80 3.70 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.18 4.79 8.06 -2.91 -0.02 4.77 16 31 H -0.01 -0.63 7.55 -2.39 -0.02 -0.65 16 32 H 0.05 2.68 5.42 -2.39 -0.01 2.67 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 34 H 0.05 1.75 7.13 -2.39 -0.02 1.73 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.41 5.76 -2.39 -0.01 2.40 16 37 H 0.05 1.53 4.68 -2.39 -0.01 1.52 16 38 H 0.09 2.31 7.57 -2.39 -0.02 2.29 16 39 H 0.05 1.59 7.90 -2.39 -0.02 1.58 16 40 H 0.09 2.52 7.60 -2.39 -0.02 2.50 16 41 H 0.07 2.67 4.17 -69.68 -0.29 2.38 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.96 5.27 -2.39 -0.01 1.95 16 44 H 0.06 2.07 6.74 -2.38 -0.02 2.06 16 Total: -1.00 -74.01 339.02 6.59 -67.43 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.73 Total: 13.83 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.92 Total: -6.84 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -1.82 Total: -93.46 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: 0.74 Total: -28.74 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.01 6.59 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890024705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.028 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds