Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.52998 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47464 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47148 * 179.97438 * 5 4 3 7 7 O 1.45200 * 109.46730 * 180.02562 * 6 5 4 8 8 C 1.34756 * 116.99417 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00292 * 359.97438 * 8 7 6 10 10 C 1.47291 * 119.99648 * 180.02562 * 8 7 6 11 11 C 1.41344 * 126.42578 * 0.03822 * 10 8 7 12 12 N 1.30427 * 108.01038 * 179.68626 * 11 10 8 13 13 N 1.39939 * 108.92113 * 0.44175 * 12 11 10 14 14 C 1.46491 * 125.74450 * 179.81281 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69080 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34222 * 108.50592 * 359.54733 * 13 12 11 24 24 C 1.50707 * 126.29232 * 180.23890 * 23 13 12 25 25 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47185 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47041 * 60.00520 * 1 2 3 28 28 H 1.09001 * 109.46765 * 240.00210 * 2 1 3 29 29 H 1.08996 * 109.46848 * 119.99862 * 2 1 3 30 30 H 1.09001 * 109.47263 * 59.99693 * 3 2 1 31 31 H 1.09008 * 109.47050 * 299.99997 * 3 2 1 32 32 H 1.09007 * 109.46800 * 59.99702 * 4 3 2 33 33 H 1.09002 * 109.46877 * 300.00364 * 4 3 2 34 34 H 1.09001 * 109.46962 * 59.99768 * 5 4 3 35 35 H 1.08997 * 109.46707 * 300.00212 * 5 4 3 36 36 H 1.08996 * 109.46514 * 60.00096 * 6 5 4 37 37 H 1.08996 * 109.46848 * 300.00124 * 6 5 4 38 38 H 1.08000 * 125.99491 * 359.96182 * 11 10 8 39 39 H 1.09004 * 109.47166 * 149.69346 * 14 13 12 40 40 H 1.08994 * 109.47507 * 29.69052 * 14 13 12 41 41 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46792 * 89.99868 * 24 23 13 43 43 H 1.08995 * 109.47272 * 209.99987 * 24 23 13 44 44 H 1.08999 * 109.47175 * 330.00300 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8851 -0.0013 7 8 6.0939 4.2541 -0.0013 8 6 7.4299 4.4306 -0.0018 9 8 8.1701 3.4669 -0.0018 10 6 7.9928 5.7917 -0.0013 11 6 7.2626 7.0019 0.0005 12 7 8.1163 7.9879 0.0072 13 7 9.4141 7.4646 -0.0002 14 6 10.6525 8.2472 -0.0001 15 6 11.0762 8.5172 -1.4209 16 1 10.4823 8.1435 -2.2419 17 6 12.2189 9.2466 -1.6727 18 7 12.5858 9.4868 -2.9125 19 14 13.2459 9.8934 -0.2527 20 1 14.2704 8.8840 0.1173 21 1 13.9174 11.1534 -0.6612 22 1 12.3665 10.1571 0.9145 23 6 9.3332 6.1248 -0.0017 24 6 10.4919 5.1612 -0.0040 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 3.7170 3.3992 0.8887 35 1 3.7162 3.3986 -0.8913 36 1 5.9732 2.3709 -0.8910 37 1 5.9733 2.3716 0.8889 38 1 6.1865 7.0940 0.0012 39 1 11.4354 7.6884 0.5127 40 1 10.4845 9.1930 0.5149 41 1 13.3899 9.9996 -3.0896 42 1 10.7723 4.9277 1.0232 43 1 10.2017 4.2452 -0.5185 44 1 11.3398 5.6137 -0.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892566196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = -50.262379 kcal Electronic energy + Delta-G solvation = -22614.219209 eV Core-core repulsion = 19146.146319 eV Total energy + Delta-G solvation = -3468.072890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95438 -39.62030 -36.96432 -35.93364 -33.96103 -33.14409 -32.22946 -31.40485 -28.98276 -27.91208 -26.89242 -24.53209 -23.17689 -22.27970 -21.41387 -21.34576 -20.23384 -18.92600 -17.34079 -17.24263 -16.66809 -16.28506 -15.85718 -15.18212 -14.83984 -14.45472 -14.31254 -14.12795 -13.67771 -13.59363 -13.14594 -13.08534 -12.80395 -12.62562 -12.35455 -12.29665 -12.15092 -12.02807 -11.68761 -11.64666 -11.26918 -11.22890 -11.20244 -11.02015 -10.87495 -10.83996 -10.45299 -10.38726 -10.32236 -9.87818 -9.79410 -8.87954 -8.71371 -8.12865 -6.35652 -4.41016 1.86780 2.63819 2.77736 3.08386 3.15836 3.17062 3.31794 3.63879 4.13219 4.40090 4.53732 4.65696 4.78233 4.89524 4.93570 5.02369 5.07608 5.09785 5.16967 5.29914 5.36086 5.42729 5.44829 5.45239 5.56834 5.62992 5.66785 5.74647 5.77761 5.87738 5.92097 5.96013 6.01387 6.06044 6.21846 6.34318 6.42099 6.52721 6.74146 7.00015 7.14535 7.47257 8.14071 8.16290 8.27644 8.67537 9.17774 10.76421 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044166 B = 0.002255 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.814021 B =12414.442367 C =12582.569492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.120 4.120 6 C 0.069 3.931 7 O -0.357 6.357 8 C 0.551 3.449 9 O -0.530 6.530 10 C -0.315 4.315 11 C 0.084 3.916 12 N -0.294 5.294 13 N -0.311 5.311 14 C 0.224 3.776 15 C -0.548 4.548 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.881 5.881 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.175 3.825 24 C -0.103 4.103 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.187 0.813 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.271 0.729 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 -15.462 7.746 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.005 4.005 7 O -0.274 6.274 8 C 0.398 3.602 9 O -0.421 6.421 10 C -0.329 4.329 11 C -0.104 4.104 12 N -0.113 5.113 13 N -0.086 5.086 14 C 0.105 3.895 15 C -0.586 4.586 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.517 5.517 19 Si 0.698 3.302 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C 0.038 3.962 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.204 0.796 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.281 -14.246 7.628 22.940 hybrid contribution 0.504 -0.495 0.480 0.854 sum -15.777 -14.741 8.108 23.064 Atomic orbital electron populations 1.21782 0.95930 1.01535 1.01848 1.21543 0.95838 0.96945 1.02051 1.21604 0.94888 0.96815 1.02379 1.21516 0.95720 0.95754 1.02553 1.21577 0.92781 0.97567 1.03789 1.22967 0.94426 0.80734 1.02378 1.86522 1.24452 1.31382 1.85026 1.20003 0.79778 0.88585 0.71788 1.90755 1.60132 1.42485 1.48712 1.18844 0.92038 0.91167 1.30829 1.23947 0.99788 0.88958 0.97688 1.77217 0.87405 1.22796 1.23915 1.48951 1.06869 1.03548 1.49277 1.20196 0.77101 0.91825 1.00334 1.21094 1.10652 1.36917 0.89951 0.89955 1.24793 0.96775 0.94850 0.95895 1.69861 1.24675 1.38524 1.18686 0.86901 0.81062 0.79523 0.82674 1.19483 1.20321 1.18757 1.21444 0.95327 0.85959 0.93485 1.20696 0.94398 0.97527 1.03462 0.92873 0.92761 0.92726 0.92014 0.92048 0.91813 0.91775 0.91600 0.91649 0.90797 0.90719 0.91465 0.91542 0.79607 0.93304 0.92496 0.91920 0.90177 0.88424 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 5 C -0.12 -1.02 5.59 -26.73 -0.15 -1.17 16 6 C 0.07 0.79 5.48 37.16 0.20 0.99 16 7 O -0.36 -5.25 10.07 -40.64 -0.41 -5.66 16 8 C 0.55 9.57 7.95 34.41 0.27 9.84 16 9 O -0.53 -9.85 14.63 -19.28 -0.28 -10.13 16 10 C -0.32 -5.91 6.13 -105.08 -0.64 -6.56 16 11 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 12 N -0.29 -6.30 12.50 30.87 0.39 -5.91 16 13 N -0.31 -6.84 3.56 -57.77 -0.21 -7.04 16 14 C 0.22 5.15 4.85 -5.20 -0.03 5.12 16 15 C -0.55 -14.86 9.94 -34.44 -0.34 -15.20 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 18 N -0.88 -25.58 13.96 55.43 0.77 -24.80 16 19 Si 0.87 19.52 27.47 -169.99 -4.67 14.85 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 C 0.18 3.49 7.01 -81.59 -0.57 2.92 16 24 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 39 H 0.05 1.02 7.05 -51.93 -0.37 0.66 16 40 H 0.06 1.31 7.19 -51.93 -0.37 0.94 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.10 1.66 6.51 -51.93 -0.34 1.32 16 44 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -30.72 369.69 -7.53 -38.25 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.41 Total: 0.12 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.29 Total: -5.24 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.95 Total: -37.76 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.69 Total: -15.79 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.72 -7.53 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892566196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.010 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds