Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.52998 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47464 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47148 * 179.97438 * 5 4 3 7 7 O 1.45200 * 109.46730 * 180.02562 * 6 5 4 8 8 C 1.34756 * 116.99417 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00292 * 359.97438 * 8 7 6 10 10 C 1.47291 * 119.99648 * 180.02562 * 8 7 6 11 11 C 1.41344 * 126.42578 * 0.03822 * 10 8 7 12 12 N 1.30427 * 108.01038 * 179.68626 * 11 10 8 13 13 N 1.39939 * 108.92113 * 0.44175 * 12 11 10 14 14 C 1.46491 * 125.74450 * 179.81281 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69080 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34222 * 108.50592 * 359.54733 * 13 12 11 24 24 C 1.50707 * 126.29232 * 180.23890 * 23 13 12 25 25 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47185 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47041 * 60.00520 * 1 2 3 28 28 H 1.09001 * 109.46765 * 240.00210 * 2 1 3 29 29 H 1.08996 * 109.46848 * 119.99862 * 2 1 3 30 30 H 1.09001 * 109.47263 * 59.99693 * 3 2 1 31 31 H 1.09008 * 109.47050 * 299.99997 * 3 2 1 32 32 H 1.09007 * 109.46800 * 59.99702 * 4 3 2 33 33 H 1.09002 * 109.46877 * 300.00364 * 4 3 2 34 34 H 1.09001 * 109.46962 * 59.99768 * 5 4 3 35 35 H 1.08997 * 109.46707 * 300.00212 * 5 4 3 36 36 H 1.08996 * 109.46514 * 60.00096 * 6 5 4 37 37 H 1.08996 * 109.46848 * 300.00124 * 6 5 4 38 38 H 1.08000 * 125.99491 * 359.96182 * 11 10 8 39 39 H 1.09004 * 109.47166 * 149.69346 * 14 13 12 40 40 H 1.08994 * 109.47507 * 29.69052 * 14 13 12 41 41 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46792 * 89.99868 * 24 23 13 43 43 H 1.08995 * 109.47272 * 209.99987 * 24 23 13 44 44 H 1.08999 * 109.47175 * 330.00300 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8851 -0.0013 7 8 6.0939 4.2541 -0.0013 8 6 7.4299 4.4306 -0.0018 9 8 8.1701 3.4669 -0.0018 10 6 7.9928 5.7917 -0.0013 11 6 7.2626 7.0019 0.0005 12 7 8.1163 7.9879 0.0072 13 7 9.4141 7.4646 -0.0002 14 6 10.6525 8.2472 -0.0001 15 6 11.0762 8.5172 -1.4209 16 1 10.4823 8.1435 -2.2419 17 6 12.2189 9.2466 -1.6727 18 7 12.5858 9.4868 -2.9125 19 14 13.2459 9.8934 -0.2527 20 1 14.2704 8.8840 0.1173 21 1 13.9174 11.1534 -0.6612 22 1 12.3665 10.1571 0.9145 23 6 9.3332 6.1248 -0.0017 24 6 10.4919 5.1612 -0.0040 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 3.7170 3.3992 0.8887 35 1 3.7162 3.3986 -0.8913 36 1 5.9732 2.3709 -0.8910 37 1 5.9733 2.3716 0.8889 38 1 6.1865 7.0940 0.0012 39 1 11.4354 7.6884 0.5127 40 1 10.4845 9.1930 0.5149 41 1 13.3899 9.9996 -3.0896 42 1 10.7723 4.9277 1.0232 43 1 10.2017 4.2452 -0.5185 44 1 11.3398 5.6137 -0.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892566196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -66.639655 kcal Electronic energy + Delta-G solvation = -22614.929381 eV Core-core repulsion = 19146.146319 eV Total energy + Delta-G solvation = -3468.783062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45810 -40.92277 -37.84219 -36.87727 -35.80196 -34.09075 -33.75786 -32.95535 -30.14714 -29.24743 -28.31568 -25.54510 -24.75909 -23.61343 -22.12817 -21.95747 -21.58274 -20.45486 -19.29422 -18.72989 -17.64207 -17.58339 -16.80588 -16.63178 -16.34040 -15.87952 -15.33469 -15.11567 -14.97659 -14.54128 -14.44623 -14.11227 -14.00607 -13.92642 -13.79127 -13.71988 -13.20140 -13.08130 -13.03318 -12.75396 -12.57447 -12.31256 -12.17269 -11.89907 -11.85526 -11.84785 -11.78393 -11.57478 -11.40585 -11.30994 -11.23190 -10.92003 -10.33528 -9.67940 -8.43370 -6.56208 0.39863 1.15055 1.33024 1.35294 1.43093 1.49339 1.91035 2.22228 2.24852 2.88933 3.61355 3.64569 3.82783 3.93356 3.98377 4.06148 4.15008 4.17417 4.32455 4.40596 4.46368 4.48794 4.49675 4.62382 4.65648 4.73789 4.79201 4.87377 4.92192 4.97724 5.05374 5.07868 5.12013 5.16098 5.20615 5.25574 5.37216 5.47739 5.48870 5.54847 5.57315 5.77292 6.16290 6.47064 6.66594 6.88965 7.07875 8.72952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044166 B = 0.002255 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.814021 B =12414.442367 C =12582.569492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.063 3.937 7 O -0.354 6.354 8 C 0.556 3.444 9 O -0.544 6.544 10 C -0.323 4.323 11 C 0.099 3.901 12 N -0.332 5.332 13 N -0.334 5.334 14 C 0.232 3.768 15 C -0.556 4.556 16 H 0.026 0.974 17 C 0.024 3.976 18 N -0.934 5.934 19 Si 0.950 3.050 20 H -0.251 1.251 21 H -0.279 1.279 22 H -0.242 1.242 23 C 0.163 3.837 24 C -0.098 4.098 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.275 0.725 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 -16.289 9.875 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.011 4.011 7 O -0.270 6.270 8 C 0.404 3.596 9 O -0.437 6.437 10 C -0.336 4.336 11 C -0.089 4.089 12 N -0.151 5.151 13 N -0.110 5.110 14 C 0.113 3.887 15 C -0.594 4.594 16 H 0.045 0.955 17 C -0.176 4.176 18 N -0.572 5.572 19 Si 0.770 3.230 20 H -0.175 1.175 21 H -0.204 1.204 22 H -0.165 1.165 23 C 0.027 3.973 24 C -0.156 4.156 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.241 0.759 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.956 -15.102 9.763 24.716 hybrid contribution 0.537 -0.355 -0.277 0.701 sum -16.419 -15.457 9.486 24.464 Atomic orbital electron populations 1.21787 0.95640 1.01836 1.01897 1.21544 0.96114 0.96632 1.02127 1.21580 0.94251 0.97151 1.02473 1.21494 0.96179 0.94608 1.02849 1.21568 0.90493 0.98754 1.04085 1.23298 0.96185 0.79035 1.02543 1.86507 1.22695 1.33482 1.84365 1.19776 0.80625 0.87755 0.71485 1.90744 1.60783 1.42735 1.49396 1.19100 0.91879 0.92248 1.30377 1.24555 1.01099 0.88000 0.95222 1.77161 0.87705 1.24372 1.25840 1.48839 1.06761 1.04182 1.51198 1.19981 0.78453 0.92713 0.97550 1.21184 1.10357 1.37010 0.90893 0.95533 1.25822 0.98034 0.94711 0.99068 1.70023 1.25690 1.39827 1.21629 0.85694 0.79358 0.78909 0.78996 1.17485 1.20379 1.16499 1.21986 0.96811 0.85640 0.92868 1.20741 0.93118 0.96665 1.05029 0.92489 0.92639 0.92761 0.92055 0.91884 0.91595 0.91828 0.91507 0.91215 0.90283 0.90652 0.91619 0.91130 0.75940 0.90624 0.92276 0.91613 0.87458 0.88397 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.28 5.93 30.59 0.18 -1.10 16 3 C -0.12 -1.26 5.21 30.59 0.16 -1.10 16 4 C -0.11 -1.36 5.21 30.59 0.16 -1.20 16 5 C -0.11 -1.68 5.59 30.60 0.17 -1.51 16 6 C 0.06 1.33 5.48 71.98 0.39 1.72 16 7 O -0.35 -9.78 10.07 -56.67 -0.57 -10.35 16 8 C 0.56 18.57 7.95 70.20 0.56 19.13 16 9 O -0.54 -19.57 14.63 19.77 0.29 -19.28 16 10 C -0.32 -11.79 6.13 -20.16 -0.12 -11.92 16 11 C 0.10 3.46 11.87 85.67 1.02 4.48 16 12 N -0.33 -14.13 12.50 -56.25 -0.70 -14.83 16 13 N -0.33 -14.66 3.56 -336.67 -1.20 -15.86 16 14 C 0.23 10.57 4.85 85.64 0.42 10.99 16 15 C -0.56 -31.02 9.94 25.60 0.25 -30.76 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 17 C 0.02 1.32 5.47 84.66 0.46 1.78 16 18 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 19 Si 0.95 39.59 27.47 68.60 1.88 41.48 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 23 C 0.16 6.42 7.01 42.17 0.30 6.72 16 24 C -0.10 -3.26 9.34 71.24 0.67 -2.60 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.22 5.78 8.06 -2.91 -0.02 5.75 16 39 H 0.08 3.02 7.05 -2.38 -0.02 3.00 16 40 H 0.06 2.65 7.19 -2.39 -0.02 2.63 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.10 3.26 6.51 -2.39 -0.02 3.24 16 44 H 0.08 2.74 7.70 -2.39 -0.02 2.73 16 Total: -1.00 -68.14 369.69 6.23 -61.91 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.91 Total: 18.57 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.32 Total: -6.12 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.60 Total: -86.21 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.28 Total: -29.63 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.88 Total: 41.48 kcal Total: -68.14 6.23 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892566196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.729 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds