Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47464 * 2 1 4 4 C 1.53002 * 109.46949 * 59.99932 * 3 2 1 5 5 C 1.52998 * 109.47049 * 300.00227 * 3 2 1 6 6 C 1.53003 * 109.47148 * 179.97438 * 3 2 1 7 7 O 1.45200 * 109.46730 * 180.02562 * 6 3 2 8 8 C 1.34756 * 116.99417 * 180.02562 * 7 6 3 9 9 O 1.21520 * 120.00292 * 359.97438 * 8 7 6 10 10 C 1.47291 * 119.99648 * 180.02562 * 8 7 6 11 11 C 1.41344 * 126.42578 * 0.03822 * 10 8 7 12 12 N 1.30427 * 108.01038 * 179.68626 * 11 10 8 13 13 N 1.39939 * 108.92113 * 0.44175 * 12 11 10 14 14 C 1.46491 * 125.74450 * 179.81281 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.69080 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.34222 * 108.50592 * 359.54733 * 13 12 11 24 24 C 1.50707 * 126.29232 * 180.23890 * 23 13 12 25 25 H 1.09002 * 109.47435 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47220 * 300.00073 * 1 2 3 27 27 H 1.09008 * 109.47070 * 59.99756 * 1 2 3 28 28 H 1.09007 * 109.46800 * 239.99964 * 2 1 3 29 29 H 1.09002 * 109.46877 * 120.00626 * 2 1 3 30 30 H 1.08997 * 109.46904 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47137 * 300.00048 * 4 3 2 32 32 H 1.09002 * 109.46764 * 59.99759 * 4 3 2 33 33 H 1.09001 * 109.46864 * 299.99601 * 5 3 2 34 34 H 1.08999 * 109.47353 * 59.99759 * 5 3 2 35 35 H 1.09002 * 109.46887 * 179.97438 * 5 3 2 36 36 H 1.08996 * 109.46514 * 60.00096 * 6 3 2 37 37 H 1.08996 * 109.46848 * 300.00124 * 6 3 2 38 38 H 1.08000 * 125.99491 * 359.96182 * 11 10 8 39 39 H 1.09004 * 109.47166 * 149.69346 * 14 13 12 40 40 H 1.08994 * 109.47507 * 29.69052 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.46792 * 89.99868 * 24 23 13 43 43 H 1.08995 * 109.47272 * 209.99987 * 24 23 13 44 44 H 1.08999 * 109.47175 * 330.00300 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1638 -1.2492 6 6 3.5701 1.4424 0.0006 7 8 4.0541 2.8114 0.0013 8 6 5.3900 2.9878 0.0013 9 8 6.1303 2.0241 0.0014 10 6 5.9531 4.3489 0.0025 11 6 5.2229 5.5591 0.0044 12 7 6.0767 6.5451 0.0117 13 7 7.3745 6.0217 0.0047 14 6 8.6129 6.8043 0.0056 15 6 9.0373 7.0746 -1.4149 16 1 8.4436 6.7012 -2.2363 17 6 10.1801 7.8040 -1.6661 18 7 10.9028 8.2590 -0.6659 19 14 10.7019 8.1457 -3.4268 20 1 10.0881 9.4171 -3.8872 21 1 12.1812 8.2584 -3.4916 22 1 10.2514 7.0333 -4.3014 23 6 7.2935 4.6819 0.0028 24 6 8.4522 3.7182 0.0007 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.8931 3.1915 1.2490 31 1 0.4401 2.1638 1.2492 32 1 1.8934 1.6498 2.1392 33 1 1.8934 1.6499 -2.1392 34 1 0.4401 2.1638 -1.2492 35 1 1.8931 3.1915 -1.2489 36 1 3.9337 0.9284 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 4.1469 5.6513 0.0046 39 1 9.3956 6.2452 0.5185 40 1 8.4447 7.7499 0.5208 41 1 11.7070 8.7719 -0.8426 42 1 8.7321 3.4845 1.0279 43 1 8.1621 2.8024 -0.5143 44 1 9.3003 4.1709 -0.5130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892766479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = -45.245841 kcal Electronic energy + Delta-G solvation = -23664.612303 eV Core-core repulsion = 20196.756946 eV Total energy + Delta-G solvation = -3467.855357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87463 -39.76559 -37.95899 -35.64247 -33.92728 -32.14533 -31.28378 -30.62205 -27.97384 -27.43215 -26.94416 -26.58350 -24.04020 -23.31270 -22.10398 -20.22031 -19.08051 -18.70355 -17.32463 -16.80163 -16.23004 -16.15438 -15.43155 -14.96591 -14.82293 -14.52212 -14.39880 -14.01590 -13.66979 -13.40268 -12.90320 -12.62250 -12.59148 -12.36779 -12.33466 -12.13772 -12.06637 -11.89786 -11.82619 -11.54405 -11.34937 -11.14722 -10.91697 -10.88387 -10.83777 -10.64528 -10.41187 -10.35056 -10.26766 -9.96697 -9.77359 -8.73676 -8.63926 -8.06133 -6.36329 -4.44535 1.94517 2.72226 2.86255 3.17151 3.23649 3.27125 3.42868 3.70259 4.22345 4.49295 4.54837 4.59981 4.98230 4.98333 5.09182 5.15739 5.18628 5.25464 5.38214 5.41219 5.44171 5.52254 5.61225 5.68426 5.69722 5.76128 5.79006 5.83961 5.88046 5.98811 5.99937 6.01811 6.22801 6.28726 6.38938 6.46803 6.72354 6.82361 6.86730 7.14173 7.51945 7.71584 7.74008 8.22330 8.36468 8.61179 9.22702 10.71847 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.002921 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.357789 B = 9582.797477 C = 9629.920389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.079 3.921 7 O -0.351 6.351 8 C 0.550 3.450 9 O -0.532 6.532 10 C -0.318 4.318 11 C 0.080 3.920 12 N -0.298 5.298 13 N -0.311 5.311 14 C 0.250 3.750 15 C -0.542 4.542 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.909 3.091 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.172 3.828 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.184 0.816 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.270 0.730 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 -13.845 2.399 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.063 4.063 4 C -0.200 4.200 5 C -0.200 4.200 6 C 0.005 3.995 7 O -0.268 6.268 8 C 0.397 3.603 9 O -0.423 6.423 10 C -0.331 4.331 11 C -0.107 4.107 12 N -0.117 5.117 13 N -0.087 5.087 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.034 3.966 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.201 0.799 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.598 -12.616 2.463 20.212 hybrid contribution 0.280 -0.681 -0.914 1.173 sum -15.318 -13.297 1.549 20.343 Atomic orbital electron populations 1.21859 0.95331 1.01548 1.02335 1.21515 0.96411 0.94888 1.02270 1.20638 0.92308 0.96076 0.97315 1.21895 1.00800 1.01237 0.96049 1.21897 1.00794 1.01266 0.96063 1.22993 0.93470 0.80831 1.02189 1.86512 1.24252 1.31064 1.84948 1.20049 0.79808 0.88619 0.71786 1.90750 1.60190 1.42519 1.48858 1.18850 0.92071 0.91075 1.31135 1.23900 0.99675 0.89052 0.98077 1.77207 0.87739 1.22913 1.23847 1.49420 1.07237 1.03656 1.48403 1.19897 0.75402 0.91808 0.99556 1.21255 1.09643 1.36204 0.90951 0.91585 1.24928 0.95674 0.94670 0.98359 1.69915 1.16066 1.35488 1.31136 0.86310 0.77726 0.79052 0.83379 1.20207 1.20771 1.19561 1.21452 0.95199 0.86213 0.93768 1.20661 0.94379 0.97321 1.03496 0.92841 0.92248 0.92242 0.91725 0.91739 0.91495 0.92319 0.92856 0.92828 0.92313 0.91479 0.91555 0.91575 0.79901 0.92459 0.92305 0.92063 0.90226 0.88690 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.21 37.16 0.34 -0.64 16 2 C -0.11 -0.85 4.99 -26.73 -0.13 -0.98 16 3 C -0.06 -0.58 0.63 -154.51 -0.10 -0.67 16 4 C -0.14 -1.26 7.98 37.16 0.30 -0.96 16 5 C -0.14 -1.29 7.98 37.16 0.30 -1.00 16 6 C 0.08 0.94 4.33 37.16 0.16 1.10 16 7 O -0.35 -5.09 8.73 -40.64 -0.35 -5.45 16 8 C 0.55 9.58 7.95 34.41 0.27 9.85 16 9 O -0.53 -9.99 14.63 -19.28 -0.28 -10.28 16 10 C -0.32 -6.02 6.13 -105.08 -0.64 -6.66 16 11 C 0.08 1.47 11.87 -16.97 -0.20 1.27 16 12 N -0.30 -6.49 12.50 30.87 0.39 -6.10 16 13 N -0.31 -7.03 3.56 -57.77 -0.21 -7.24 16 14 C 0.25 6.17 5.78 -5.20 -0.03 6.14 16 15 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 16 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 19 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.17 3.49 7.01 -81.59 -0.57 2.92 16 24 C -0.10 -1.78 9.34 36.01 0.34 -1.44 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 27 H 0.06 0.37 6.43 -51.92 -0.33 0.04 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 31 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 35 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 39 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 40 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.64 6.51 -51.93 -0.34 1.30 16 44 H 0.09 1.58 7.70 -51.93 -0.40 1.18 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -29.18 361.94 -6.72 -35.90 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.04 Total: -0.14 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.39 Total: -4.17 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.92 Total: -36.96 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.64 Total: -15.72 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.18 -6.72 -35.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892766479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.344 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds