Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47395 * 54.99425 * 4 3 2 6 6 C 1.53002 * 109.47413 * 174.99889 * 4 3 2 7 7 C 1.52997 * 109.47312 * 184.99492 * 6 4 3 8 8 O 1.45207 * 109.46938 * 294.99591 * 4 3 2 9 9 C 1.34756 * 116.99884 * 150.00119 * 8 4 3 10 10 O 1.21527 * 120.00171 * 359.97438 * 9 8 4 11 11 C 1.47281 * 119.99858 * 180.02562 * 9 8 4 12 12 C 1.41342 * 126.42701 * 359.67798 * 11 9 8 13 13 N 1.30435 * 108.01214 * 179.85575 * 12 11 9 14 14 N 1.39925 * 108.91860 * 0.41852 * 13 12 11 15 15 C 1.46496 * 125.74627 * 179.73277 * 14 13 12 16 16 C 1.50703 * 109.47587 * 269.99822 * 15 14 13 17 17 H 1.08005 * 119.99207 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00524 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99910 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47183 * 59.99543 * 20 18 16 22 22 H 1.48502 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46678 * 299.99211 * 20 18 16 24 24 C 1.34222 * 108.51469 * 359.73030 * 14 13 12 25 25 C 1.50703 * 126.29872 * 180.02562 * 24 14 13 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 30 30 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 31 31 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 32 32 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 33 33 H 1.09001 * 109.46907 * 305.00151 * 6 4 3 34 34 H 1.09003 * 109.46907 * 64.99585 * 6 4 3 35 35 H 1.09000 * 109.46552 * 60.00216 * 7 6 4 36 36 H 1.09005 * 109.46723 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.47193 * 300.00210 * 7 6 4 38 38 H 1.07997 * 125.99722 * 0.03520 * 12 11 9 39 39 H 1.09003 * 109.47310 * 29.99694 * 15 14 13 40 40 H 1.09007 * 109.47508 * 149.99720 * 15 14 13 41 41 H 0.96996 * 119.99931 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46794 * 269.97243 * 25 24 14 43 43 H 1.08999 * 109.47118 * 29.97221 * 25 24 14 44 44 H 1.09001 * 109.47528 * 149.97824 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0800 2.8795 -0.1264 7 6 5.6048 2.8704 -0.2523 8 8 4.0545 0.8638 1.2399 9 6 5.2388 0.2224 1.1942 10 8 5.8497 0.1483 0.1463 11 6 5.7922 -0.3897 2.4142 12 6 5.2032 -0.3810 3.6990 13 7 5.9944 -1.0276 4.5098 14 7 7.1152 -1.4662 3.7961 15 6 8.2393 -2.2250 4.3499 16 6 9.2948 -1.2701 4.8451 17 1 9.1434 -0.2044 4.7558 18 6 10.4539 -1.7567 5.4112 19 7 10.6383 -3.0544 5.5195 20 14 11.7618 -0.5730 6.0256 21 1 11.1849 0.2975 7.0813 22 1 12.9013 -1.3422 6.5869 23 1 12.2387 0.2667 4.8974 24 6 6.9871 -1.0747 2.5187 25 6 7.9665 -1.3350 1.4033 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.6450 3.3432 -1.0117 34 1 3.7920 3.4460 0.7592 35 1 5.8927 2.3038 -1.1379 36 1 5.9680 3.8942 -0.3423 37 1 6.0397 2.4066 0.6330 38 1 4.2617 0.0778 3.9626 39 1 7.8890 -2.8408 5.1784 40 1 8.6627 -2.8647 3.5754 41 1 11.4536 -3.3968 5.9181 42 1 8.6873 -0.5188 1.3548 43 1 8.4908 -2.2720 1.5914 44 1 7.4300 -1.4025 0.4569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892861132.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = -49.355767 kcal Electronic energy + Delta-G solvation = -23983.265879 eV Core-core repulsion = 20515.232302 eV Total energy + Delta-G solvation = -3468.033577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90105 -39.86316 -36.81159 -34.79030 -33.92158 -33.19364 -32.13552 -31.20085 -28.99499 -27.56470 -26.73279 -24.41786 -23.63957 -22.58916 -21.25483 -20.94870 -20.14014 -18.89625 -17.53142 -16.82436 -16.36824 -15.96681 -15.18645 -15.05887 -14.58068 -14.43397 -14.24413 -14.00091 -13.47939 -13.33522 -12.88264 -12.64671 -12.55777 -12.53741 -12.46852 -12.14299 -11.90097 -11.84877 -11.74015 -11.54043 -11.28080 -11.15832 -10.99061 -10.88862 -10.81046 -10.69957 -10.41951 -10.30536 -10.02218 -9.97643 -9.69693 -8.72723 -8.63834 -8.04808 -6.35726 -4.43908 1.96390 2.73505 2.90061 3.18922 3.23054 3.26333 3.44291 3.71690 4.22638 4.43583 4.76613 4.83853 4.98133 5.03396 5.05854 5.13308 5.16864 5.24690 5.34030 5.42412 5.55299 5.58295 5.62227 5.69704 5.73043 5.84555 5.91756 5.92260 5.95806 6.04416 6.04669 6.15032 6.18446 6.34711 6.38511 6.45897 6.75129 6.86817 6.88008 7.14813 7.52166 7.72095 7.74564 8.25327 8.38157 8.61161 9.23163 10.72512 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.003441 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.815272 B = 8135.479782 C = 8654.905352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.115 4.115 4 C 0.089 3.911 5 H 0.084 0.916 6 C -0.139 4.139 7 C -0.151 4.151 8 O -0.348 6.348 9 C 0.550 3.450 10 O -0.527 6.527 11 C -0.319 4.319 12 C 0.079 3.921 13 N -0.298 5.298 14 N -0.311 5.311 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.171 3.829 25 C -0.095 4.095 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.184 0.816 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 7.408 -11.786 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.034 3.966 5 H 0.102 0.898 6 C -0.177 4.177 7 C -0.208 4.208 8 O -0.266 6.266 9 C 0.398 3.602 10 O -0.418 6.418 11 C -0.332 4.332 12 C -0.108 4.108 13 N -0.117 5.117 14 N -0.087 5.087 15 C 0.134 3.866 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.198 1.198 24 C 0.033 3.967 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.201 0.799 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.026 6.737 -10.716 18.893 hybrid contribution 0.648 0.916 -0.411 1.194 sum -13.378 7.653 -11.126 19.009 Atomic orbital electron populations 1.21761 0.95806 1.01634 1.01598 1.21536 0.95769 0.96512 1.02729 1.21740 0.92513 0.97947 1.03022 1.22761 0.93830 0.93896 0.86100 0.89827 1.21967 0.97312 0.95864 1.02515 1.21825 0.94832 1.01143 1.03025 1.86594 1.36786 1.65816 1.37378 1.19981 0.78313 0.74345 0.87594 1.90745 1.59956 1.58989 1.32109 1.18873 1.00652 1.20024 0.93657 1.23910 0.99202 0.97525 0.90156 1.77212 0.96107 1.17770 1.20617 1.49409 1.16332 1.38301 1.04674 1.19888 0.79614 0.91105 0.95997 1.21205 1.01592 0.93324 1.41908 0.91666 1.24916 0.98112 0.95583 0.94971 1.69900 1.27489 1.11788 1.43495 0.86372 0.80253 0.80498 0.79363 1.19855 1.20842 1.19832 1.21449 0.94330 0.93062 0.87883 1.20610 0.96881 1.03180 0.94642 0.92662 0.92979 0.92771 0.91091 0.92172 0.90288 0.90742 0.90719 0.91145 0.91932 0.93121 0.92496 0.79931 0.92345 0.92488 0.92009 0.89605 0.90563 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.19 5.83 -26.73 -0.16 -1.35 16 3 C -0.11 -1.03 4.93 -26.73 -0.13 -1.16 16 4 C 0.09 1.03 2.25 -26.73 -0.06 0.97 16 5 H 0.08 1.05 7.16 -51.93 -0.37 0.68 16 6 C -0.14 -1.46 5.65 -26.73 -0.15 -1.61 16 7 C -0.15 -1.89 8.56 37.16 0.32 -1.57 16 8 O -0.35 -5.04 9.21 -40.64 -0.37 -5.41 16 9 C 0.55 9.32 6.40 34.41 0.22 9.54 16 10 O -0.53 -9.33 12.03 -19.29 -0.23 -9.56 16 11 C -0.32 -5.98 6.13 -105.08 -0.64 -6.63 16 12 C 0.08 1.46 11.87 -16.96 -0.20 1.26 16 13 N -0.30 -6.50 12.50 30.87 0.39 -6.12 16 14 N -0.31 -7.02 3.56 -57.76 -0.21 -7.23 16 15 C 0.25 6.19 5.97 -5.19 -0.03 6.16 16 16 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 17 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 20 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 C 0.17 3.45 7.01 -81.59 -0.57 2.87 16 25 C -0.10 -1.67 9.57 36.01 0.34 -1.32 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 38 H 0.18 2.68 8.06 -52.49 -0.42 2.25 16 39 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.39 7.01 -51.93 -0.36 1.02 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.30 7.05 -51.93 -0.37 0.93 16 44 H 0.09 1.53 6.50 -51.93 -0.34 1.19 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -28.87 363.51 -7.53 -36.40 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.18 Total: 1.18 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.12 Total: -6.72 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.92 Total: -37.03 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.61 Total: -14.97 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.87 -7.53 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892861132.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.954 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds