Wall clock time and date at job start Tue Mar 31 2020 07:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47395 * 54.99425 * 4 3 2 6 6 C 1.53002 * 109.47413 * 174.99889 * 4 3 2 7 7 C 1.52997 * 109.47312 * 184.99492 * 6 4 3 8 8 O 1.45207 * 109.46938 * 294.99591 * 4 3 2 9 9 C 1.34756 * 116.99884 * 150.00119 * 8 4 3 10 10 O 1.21527 * 120.00171 * 359.97438 * 9 8 4 11 11 C 1.47281 * 119.99858 * 180.02562 * 9 8 4 12 12 C 1.41342 * 126.42701 * 359.67798 * 11 9 8 13 13 N 1.30435 * 108.01214 * 179.85575 * 12 11 9 14 14 N 1.39925 * 108.91860 * 0.41852 * 13 12 11 15 15 C 1.46496 * 125.74627 * 179.73277 * 14 13 12 16 16 C 1.50703 * 109.47587 * 269.99822 * 15 14 13 17 17 H 1.08005 * 119.99207 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00524 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99910 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47183 * 59.99543 * 20 18 16 22 22 H 1.48502 * 109.47307 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46678 * 299.99211 * 20 18 16 24 24 C 1.34222 * 108.51469 * 359.73030 * 14 13 12 25 25 C 1.50703 * 126.29872 * 180.02562 * 24 14 13 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 30 30 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 31 31 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 32 32 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 33 33 H 1.09001 * 109.46907 * 305.00151 * 6 4 3 34 34 H 1.09003 * 109.46907 * 64.99585 * 6 4 3 35 35 H 1.09000 * 109.46552 * 60.00216 * 7 6 4 36 36 H 1.09005 * 109.46723 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.47193 * 300.00210 * 7 6 4 38 38 H 1.07997 * 125.99722 * 0.03520 * 12 11 9 39 39 H 1.09003 * 109.47310 * 29.99694 * 15 14 13 40 40 H 1.09007 * 109.47508 * 149.99720 * 15 14 13 41 41 H 0.96996 * 119.99931 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46794 * 269.97243 * 25 24 14 43 43 H 1.08999 * 109.47118 * 29.97221 * 25 24 14 44 44 H 1.09001 * 109.47528 * 149.97824 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0800 2.8795 -0.1264 7 6 5.6048 2.8704 -0.2523 8 8 4.0545 0.8638 1.2399 9 6 5.2388 0.2224 1.1942 10 8 5.8497 0.1483 0.1463 11 6 5.7922 -0.3897 2.4142 12 6 5.2032 -0.3810 3.6990 13 7 5.9944 -1.0276 4.5098 14 7 7.1152 -1.4662 3.7961 15 6 8.2393 -2.2250 4.3499 16 6 9.2948 -1.2701 4.8451 17 1 9.1434 -0.2044 4.7558 18 6 10.4539 -1.7567 5.4112 19 7 10.6383 -3.0544 5.5195 20 14 11.7618 -0.5730 6.0256 21 1 11.1849 0.2975 7.0813 22 1 12.9013 -1.3422 6.5869 23 1 12.2387 0.2667 4.8974 24 6 6.9871 -1.0747 2.5187 25 6 7.9665 -1.3350 1.4033 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.6450 3.3432 -1.0117 34 1 3.7920 3.4460 0.7592 35 1 5.8927 2.3038 -1.1379 36 1 5.9680 3.8942 -0.3423 37 1 6.0397 2.4066 0.6330 38 1 4.2617 0.0778 3.9626 39 1 7.8890 -2.8408 5.1784 40 1 8.6627 -2.8647 3.5754 41 1 11.4536 -3.3968 5.9181 42 1 8.6873 -0.5188 1.3548 43 1 8.4908 -2.2720 1.5914 44 1 7.4300 -1.4025 0.4569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892861132.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:05 Heat of formation + Delta-G solvation = -63.371914 kcal Electronic energy + Delta-G solvation = -23983.873665 eV Core-core repulsion = 20515.232302 eV Total energy + Delta-G solvation = -3468.641363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42751 -41.12878 -37.94502 -35.89135 -35.68666 -34.10116 -33.85559 -32.81327 -29.93343 -29.22260 -28.31430 -25.63937 -25.08929 -24.00889 -22.20879 -21.94866 -21.37655 -20.47403 -18.96312 -18.76469 -17.65184 -17.20892 -16.82168 -16.29491 -15.99792 -15.83424 -15.26764 -15.09207 -14.87292 -14.53636 -14.22168 -14.19506 -13.75399 -13.71821 -13.61069 -13.37029 -13.29627 -13.14862 -13.02893 -12.84759 -12.70345 -12.62205 -12.31483 -12.03443 -11.91021 -11.85931 -11.81872 -11.64457 -11.48743 -11.21459 -10.90845 -10.76780 -10.33120 -9.64342 -8.39121 -6.55598 0.47269 1.20333 1.37767 1.39013 1.45172 1.52073 1.99897 2.29134 2.32262 2.93526 3.62627 3.66452 3.75296 3.94753 3.98960 4.08484 4.15712 4.24821 4.34286 4.40206 4.51358 4.54701 4.60031 4.74427 4.77882 4.83373 4.85924 4.90310 4.96021 5.00033 5.03958 5.08816 5.10840 5.18859 5.28844 5.36092 5.38222 5.47454 5.49397 5.58721 5.68375 5.72630 5.97179 6.52406 6.73729 7.00342 7.15606 8.68827 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.003441 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.815272 B = 8135.479782 C = 8654.905352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.108 4.108 4 C 0.082 3.918 5 H 0.073 0.927 6 C -0.135 4.135 7 C -0.150 4.150 8 O -0.347 6.347 9 C 0.557 3.443 10 O -0.537 6.537 11 C -0.322 4.322 12 C 0.095 3.905 13 N -0.335 5.335 14 N -0.334 5.334 15 C 0.266 3.734 16 C -0.558 4.558 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.274 1.274 22 H -0.273 1.273 23 H -0.266 1.266 24 C 0.158 3.842 25 C -0.089 4.089 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.221 0.779 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.275 0.725 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 9.300 -12.870 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.145 4.145 4 C 0.028 3.972 5 H 0.091 0.909 6 C -0.172 4.172 7 C -0.207 4.207 8 O -0.263 6.263 9 C 0.404 3.596 10 O -0.428 6.428 11 C -0.335 4.335 12 C -0.092 4.092 13 N -0.155 5.155 14 N -0.110 5.110 15 C 0.148 3.852 16 C -0.596 4.596 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.794 3.206 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.191 1.191 24 C 0.022 3.978 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.237 0.763 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.264 8.636 -11.818 21.148 hybrid contribution 0.900 0.370 -0.162 0.987 sum -14.364 9.006 -11.980 20.759 Atomic orbital electron populations 1.21733 0.94391 1.01916 1.02436 1.21536 0.97028 0.96653 1.01535 1.21765 0.90181 0.97911 1.04604 1.23122 0.95572 0.94180 0.84350 0.90898 1.21993 0.95777 0.95241 1.04221 1.21798 0.96429 1.01506 1.01009 1.86570 1.35270 1.65306 1.39194 1.19649 0.78960 0.74340 0.86664 1.90736 1.60471 1.59378 1.32254 1.19140 1.00192 1.19459 0.94714 1.24508 0.99552 0.95690 0.89471 1.77160 0.96722 1.19585 1.21996 1.49167 1.16522 1.39752 1.05578 1.19438 0.79962 0.90741 0.95045 1.21361 1.02669 0.92972 1.42640 0.92947 1.25709 0.99936 0.97142 0.94807 1.69982 1.28233 1.13240 1.43896 0.85414 0.77812 0.78509 0.78858 1.19907 1.19727 1.19051 1.21947 0.95390 0.92963 0.87523 1.20632 0.96561 1.03193 0.94299 0.92311 0.91618 0.92865 0.93189 0.92562 0.87595 0.90127 0.87710 0.90544 0.92872 0.91675 0.95566 0.76262 0.94860 0.92737 0.91588 0.89427 0.90518 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.18 5.83 30.60 0.18 -2.00 16 3 C -0.11 -1.60 4.93 30.59 0.15 -1.45 16 4 C 0.08 1.72 2.25 30.59 0.07 1.79 16 5 H 0.07 1.71 7.16 -2.39 -0.02 1.70 16 6 C -0.14 -2.46 5.65 30.59 0.17 -2.29 16 7 C -0.15 -3.53 8.56 71.98 0.62 -2.92 16 8 O -0.35 -9.50 9.21 -56.66 -0.52 -10.02 16 9 C 0.56 18.46 6.40 70.20 0.45 18.90 16 10 O -0.54 -18.72 12.03 19.75 0.24 -18.48 16 11 C -0.32 -12.00 6.13 -20.16 -0.12 -12.12 16 12 C 0.09 3.44 11.87 85.66 1.02 4.45 16 13 N -0.34 -14.86 12.50 -56.25 -0.70 -15.57 16 14 N -0.33 -15.48 3.56 -336.65 -1.20 -16.68 16 15 C 0.27 13.67 5.97 85.63 0.51 14.18 16 16 C -0.56 -30.60 9.39 25.60 0.24 -30.36 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 18 C 0.03 1.38 5.46 84.65 0.46 1.84 16 19 N -0.92 -50.89 13.29 21.45 0.28 -50.60 16 20 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C 0.16 6.48 7.01 42.17 0.30 6.78 16 25 C -0.09 -3.15 9.57 71.24 0.68 -2.47 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.33 7.79 -2.39 -0.02 1.31 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 37 H 0.03 0.76 6.06 -2.39 -0.01 0.75 16 38 H 0.22 5.99 8.06 -2.91 -0.02 5.97 16 39 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 2.77 7.01 -2.38 -0.02 2.75 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.08 2.67 7.05 -2.39 -0.02 2.66 16 44 H 0.10 3.43 6.50 -2.39 -0.02 3.42 16 Total: -1.00 -62.78 363.51 6.53 -56.25 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.97 Total: 17.57 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.43 Total: -6.86 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.62 Total: -82.85 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.28 Total: -28.50 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -62.78 6.53 -56.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892861132.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.124 kcal (2) G-P(sol) polarization free energy of solvation -62.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds