Wall clock time and date at job start Tue Mar 31 2020 07:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47367 * 305.00618 * 4 3 2 6 6 C 1.52998 * 109.47194 * 184.99926 * 4 3 2 7 7 C 1.52999 * 109.47212 * 175.00482 * 6 4 3 8 8 O 1.45205 * 109.47083 * 65.00242 * 4 3 2 9 9 C 1.34750 * 117.00363 * 210.00258 * 8 4 3 10 10 O 1.21531 * 119.99734 * 359.97438 * 9 8 4 11 11 C 1.47287 * 120.00334 * 180.02562 * 9 8 4 12 12 C 1.41343 * 126.42421 * 359.97075 * 11 9 8 13 13 N 1.30429 * 108.00976 * 180.02562 * 12 11 9 14 14 N 1.39926 * 108.92424 * 359.97438 * 13 12 11 15 15 C 1.46491 * 125.74841 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46957 * 90.02368 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.34227 * 108.51030 * 0.26454 * 14 13 12 25 25 C 1.50694 * 126.29821 * 179.73832 * 24 14 13 26 26 H 1.09000 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47203 * 299.99858 * 1 2 3 28 28 H 1.09002 * 109.46812 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.47570 * 239.99895 * 2 1 3 30 30 H 1.09005 * 109.47334 * 120.00090 * 2 1 3 31 31 H 1.09007 * 109.46860 * 59.99930 * 3 2 1 32 32 H 1.08996 * 109.47238 * 300.00347 * 3 2 1 33 33 H 1.08995 * 109.47115 * 295.00400 * 6 4 3 34 34 H 1.08998 * 109.46930 * 55.00246 * 6 4 3 35 35 H 1.08998 * 109.47366 * 60.00031 * 7 6 4 36 36 H 1.09000 * 109.47310 * 180.02562 * 7 6 4 37 37 H 1.09006 * 109.46630 * 299.99650 * 7 6 4 38 38 H 1.08004 * 125.99586 * 359.97438 * 12 11 9 39 39 H 1.09004 * 109.47166 * 330.02634 * 15 14 13 40 40 H 1.08994 * 109.47507 * 210.02340 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47303 * 89.99922 * 25 24 14 43 43 H 1.09004 * 109.47706 * 210.00193 * 25 24 14 44 44 H 1.09000 * 109.47395 * 329.99807 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0800 2.8795 0.1263 7 6 5.6047 2.8704 0.2523 8 8 4.0545 0.8638 -1.2398 9 6 5.2387 0.2224 -1.1942 10 8 5.8501 0.1490 -0.1465 11 6 5.7927 -0.3889 -2.4144 12 6 5.2010 -0.3850 -3.6980 13 7 5.9949 -1.0266 -4.5100 14 7 7.1160 -1.4648 -3.7965 15 6 8.2399 -2.2238 -4.3502 16 6 9.2953 -1.2690 -4.8458 17 1 9.1442 -0.2033 -4.7568 18 6 10.4567 -1.7560 -5.4072 19 7 10.6409 -3.0537 -5.5153 20 14 11.7682 -0.5726 -6.0145 21 1 12.2407 0.2656 -4.8833 22 1 12.9097 -1.3421 -6.5714 23 1 11.1968 0.2995 -7.0719 24 6 6.9853 -1.0780 -2.5178 25 6 7.9616 -1.3439 -1.4011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7919 3.4460 -0.7592 34 1 3.6450 3.3432 1.0117 35 1 6.0397 2.4067 -0.6331 36 1 5.9680 3.8941 0.3423 37 1 5.8927 2.3039 1.1379 38 1 4.2566 0.0688 -3.9603 39 1 7.8895 -2.8398 -5.1785 40 1 8.6633 -2.8632 -3.5757 41 1 11.4578 -3.3963 -5.9106 42 1 8.6836 -0.5291 -1.3480 43 1 7.4227 -1.4141 -0.4562 44 1 8.4847 -2.2811 -1.5913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892861133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:08 Heat of formation + Delta-G solvation = -49.339111 kcal Electronic energy + Delta-G solvation = -23982.901584 eV Core-core repulsion = 20514.868729 eV Total energy + Delta-G solvation = -3468.032855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90121 -39.86360 -36.81105 -34.79070 -33.92148 -33.19392 -32.13629 -31.20151 -28.99524 -27.56519 -26.73314 -24.41807 -23.63915 -22.58932 -21.25490 -20.94866 -20.13993 -18.89629 -17.53177 -16.82362 -16.36771 -15.96779 -15.18743 -15.05940 -14.57818 -14.43641 -14.24528 -14.00133 -13.47999 -13.33389 -12.88382 -12.64587 -12.55805 -12.53739 -12.47008 -12.14202 -11.90130 -11.84952 -11.74015 -11.54059 -11.28105 -11.15804 -10.99021 -10.88827 -10.81040 -10.69962 -10.41972 -10.30552 -10.02267 -9.97608 -9.69638 -8.72709 -8.63899 -8.04796 -6.35743 -4.43842 1.96356 2.73657 2.89926 3.18929 3.23060 3.26322 3.44150 3.71679 4.22676 4.43575 4.76605 4.83810 4.98125 5.03384 5.05857 5.13283 5.16792 5.24677 5.34037 5.42382 5.55286 5.58234 5.62196 5.69677 5.72980 5.84560 5.91815 5.92257 5.95746 6.04344 6.04615 6.15022 6.18400 6.34718 6.38416 6.45804 6.75101 6.86772 6.88001 7.14810 7.52162 7.72112 7.74636 8.25317 8.38149 8.61219 9.23157 10.72485 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003441 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.279095 B = 8134.499363 C = 8654.765099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.115 4.115 4 C 0.089 3.911 5 H 0.084 0.916 6 C -0.139 4.139 7 C -0.151 4.151 8 O -0.348 6.348 9 C 0.550 3.450 10 O -0.527 6.527 11 C -0.319 4.319 12 C 0.079 3.921 13 N -0.298 5.298 14 N -0.311 5.311 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.171 3.829 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.184 0.816 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 7.377 11.789 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.034 3.966 5 H 0.102 0.898 6 C -0.177 4.177 7 C -0.208 4.208 8 O -0.266 6.266 9 C 0.398 3.602 10 O -0.418 6.418 11 C -0.332 4.332 12 C -0.108 4.108 13 N -0.117 5.117 14 N -0.087 5.087 15 C 0.134 3.866 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.033 3.967 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.201 0.799 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.041 6.714 10.719 18.898 hybrid contribution 0.649 0.912 0.419 1.195 sum -13.392 7.626 11.138 19.015 Atomic orbital electron populations 1.21757 0.95805 1.01636 1.01599 1.21536 0.95769 0.96512 1.02729 1.21741 0.92512 0.97946 1.03023 1.22761 0.93828 0.93896 0.86098 0.89828 1.21964 0.97312 0.95863 1.02515 1.21826 0.94831 1.01142 1.03027 1.86591 1.36796 1.65805 1.37381 1.19983 0.78312 0.74358 0.87587 1.90746 1.59944 1.58989 1.32121 1.18873 1.00684 1.19950 0.93685 1.23911 0.99162 0.97554 0.90172 1.77208 0.95969 1.17904 1.20618 1.49409 1.16350 1.38362 1.04590 1.19886 0.79624 0.91099 0.95993 1.21206 1.01480 0.93325 1.42015 0.91661 1.24920 0.98120 0.95584 0.94969 1.69904 1.27416 1.11780 1.43569 0.86371 0.80262 0.80494 0.79352 1.19835 1.20843 1.19853 1.21448 0.94377 0.93046 0.87868 1.20607 0.96934 1.03154 0.94608 0.92773 0.92977 0.92661 0.91092 0.92173 0.90287 0.90743 0.91145 0.90720 0.92493 0.93123 0.91933 0.79928 0.92353 0.92487 0.92011 0.89604 0.88860 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.19 5.83 -26.73 -0.16 -1.35 16 3 C -0.11 -1.03 4.93 -26.73 -0.13 -1.16 16 4 C 0.09 1.03 2.25 -26.73 -0.06 0.97 16 5 H 0.08 1.05 7.16 -51.93 -0.37 0.68 16 6 C -0.14 -1.46 5.65 -26.73 -0.15 -1.61 16 7 C -0.15 -1.89 8.56 37.16 0.32 -1.57 16 8 O -0.35 -5.04 9.21 -40.63 -0.37 -5.41 16 9 C 0.55 9.32 6.41 34.41 0.22 9.54 16 10 O -0.53 -9.33 12.03 -19.29 -0.23 -9.56 16 11 C -0.32 -5.98 6.13 -105.08 -0.64 -6.62 16 12 C 0.08 1.46 11.87 -16.97 -0.20 1.26 16 13 N -0.30 -6.50 12.50 30.87 0.39 -6.11 16 14 N -0.31 -7.02 3.56 -57.77 -0.21 -7.22 16 15 C 0.25 6.19 5.97 -5.20 -0.03 6.16 16 16 C -0.54 -14.51 9.39 -34.44 -0.32 -14.84 16 17 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 20 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 C 0.17 3.44 7.01 -81.59 -0.57 2.87 16 25 C -0.09 -1.66 9.56 36.00 0.34 -1.32 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.86 6.06 -51.93 -0.31 0.55 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 38 H 0.18 2.67 8.06 -52.48 -0.42 2.25 16 39 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.39 7.00 -51.93 -0.36 1.02 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.53 6.52 -51.93 -0.34 1.19 16 44 H 0.08 1.30 7.04 -51.93 -0.37 0.93 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -28.88 363.51 -7.53 -36.41 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.18 Total: 1.17 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.12 Total: -6.73 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.92 Total: -37.03 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.61 Total: -14.97 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.88 -7.53 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892861133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.930 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds