Wall clock time and date at job start Tue Mar 31 2020 07:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47367 * 305.00618 * 4 3 2 6 6 C 1.52998 * 109.47194 * 184.99926 * 4 3 2 7 7 C 1.52999 * 109.47212 * 175.00482 * 6 4 3 8 8 O 1.45205 * 109.47083 * 65.00242 * 4 3 2 9 9 C 1.34750 * 117.00363 * 210.00258 * 8 4 3 10 10 O 1.21531 * 119.99734 * 359.97438 * 9 8 4 11 11 C 1.47287 * 120.00334 * 180.02562 * 9 8 4 12 12 C 1.41343 * 126.42421 * 359.97075 * 11 9 8 13 13 N 1.30429 * 108.00976 * 180.02562 * 12 11 9 14 14 N 1.39926 * 108.92424 * 359.97438 * 13 12 11 15 15 C 1.46491 * 125.74841 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46957 * 90.02368 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.34227 * 108.51030 * 0.26454 * 14 13 12 25 25 C 1.50694 * 126.29821 * 179.73832 * 24 14 13 26 26 H 1.09000 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47203 * 299.99858 * 1 2 3 28 28 H 1.09002 * 109.46812 * 60.00444 * 1 2 3 29 29 H 1.09002 * 109.47570 * 239.99895 * 2 1 3 30 30 H 1.09005 * 109.47334 * 120.00090 * 2 1 3 31 31 H 1.09007 * 109.46860 * 59.99930 * 3 2 1 32 32 H 1.08996 * 109.47238 * 300.00347 * 3 2 1 33 33 H 1.08995 * 109.47115 * 295.00400 * 6 4 3 34 34 H 1.08998 * 109.46930 * 55.00246 * 6 4 3 35 35 H 1.08998 * 109.47366 * 60.00031 * 7 6 4 36 36 H 1.09000 * 109.47310 * 180.02562 * 7 6 4 37 37 H 1.09006 * 109.46630 * 299.99650 * 7 6 4 38 38 H 1.08004 * 125.99586 * 359.97438 * 12 11 9 39 39 H 1.09004 * 109.47166 * 330.02634 * 15 14 13 40 40 H 1.08994 * 109.47507 * 210.02340 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47303 * 89.99922 * 25 24 14 43 43 H 1.09004 * 109.47706 * 210.00193 * 25 24 14 44 44 H 1.09000 * 109.47395 * 329.99807 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0800 2.8795 0.1263 7 6 5.6047 2.8704 0.2523 8 8 4.0545 0.8638 -1.2398 9 6 5.2387 0.2224 -1.1942 10 8 5.8501 0.1490 -0.1465 11 6 5.7927 -0.3889 -2.4144 12 6 5.2010 -0.3850 -3.6980 13 7 5.9949 -1.0266 -4.5100 14 7 7.1160 -1.4648 -3.7965 15 6 8.2399 -2.2238 -4.3502 16 6 9.2953 -1.2690 -4.8458 17 1 9.1442 -0.2033 -4.7568 18 6 10.4567 -1.7560 -5.4072 19 7 10.6409 -3.0537 -5.5153 20 14 11.7682 -0.5726 -6.0145 21 1 12.2407 0.2656 -4.8833 22 1 12.9097 -1.3421 -6.5714 23 1 11.1968 0.2995 -7.0719 24 6 6.9853 -1.0780 -2.5178 25 6 7.9616 -1.3439 -1.4011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.7919 3.4460 -0.7592 34 1 3.6450 3.3432 1.0117 35 1 6.0397 2.4067 -0.6331 36 1 5.9680 3.8941 0.3423 37 1 5.8927 2.3039 1.1379 38 1 4.2566 0.0688 -3.9603 39 1 7.8895 -2.8398 -5.1785 40 1 8.6633 -2.8632 -3.5757 41 1 11.4578 -3.3963 -5.9106 42 1 8.6836 -0.5291 -1.3480 43 1 7.4227 -1.4141 -0.4562 44 1 8.4847 -2.2811 -1.5913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892861133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:08 Heat of formation + Delta-G solvation = -63.363248 kcal Electronic energy + Delta-G solvation = -23983.509716 eV Core-core repulsion = 20514.868729 eV Total energy + Delta-G solvation = -3468.640987 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42748 -41.12913 -37.94443 -35.89128 -35.68683 -34.10166 -33.85628 -32.81396 -29.93373 -29.22290 -28.31448 -25.63916 -25.08938 -24.00903 -22.20883 -21.94839 -21.37645 -20.47379 -18.96341 -18.76439 -17.65165 -17.20901 -16.82268 -16.29327 -16.00201 -15.83415 -15.26696 -15.09214 -14.87236 -14.53736 -14.22110 -14.19533 -13.75229 -13.71869 -13.61136 -13.37068 -13.29657 -13.14933 -13.02904 -12.84764 -12.70324 -12.62193 -12.31446 -12.03472 -11.90968 -11.85907 -11.82024 -11.64481 -11.48702 -11.21410 -10.90839 -10.76775 -10.33184 -9.64330 -8.39166 -6.55572 0.47254 1.20550 1.37746 1.38952 1.45018 1.52028 1.99818 2.29152 2.32263 2.93487 3.62618 3.66411 3.75269 3.94748 3.98947 4.08467 4.15632 4.24809 4.34277 4.40190 4.51309 4.54645 4.60016 4.74337 4.77897 4.83365 4.85919 4.90322 4.95999 5.00012 5.03941 5.08801 5.10819 5.18836 5.28864 5.36073 5.38218 5.47432 5.49429 5.58736 5.68373 5.72643 5.97225 6.52399 6.73748 7.00342 7.15563 8.68768 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003441 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.279095 B = 8134.499363 C = 8654.765099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.108 4.108 4 C 0.082 3.918 5 H 0.073 0.927 6 C -0.135 4.135 7 C -0.150 4.150 8 O -0.347 6.347 9 C 0.557 3.443 10 O -0.537 6.537 11 C -0.322 4.322 12 C 0.095 3.905 13 N -0.335 5.335 14 N -0.334 5.334 15 C 0.266 3.734 16 C -0.559 4.559 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.158 3.842 25 C -0.089 4.089 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.221 0.779 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.275 0.725 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 9.262 12.878 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.145 4.145 4 C 0.028 3.972 5 H 0.091 0.909 6 C -0.172 4.172 7 C -0.207 4.207 8 O -0.263 6.263 9 C 0.404 3.596 10 O -0.428 6.428 11 C -0.335 4.335 12 C -0.092 4.092 13 N -0.155 5.155 14 N -0.110 5.110 15 C 0.148 3.852 16 C -0.597 4.597 17 H 0.070 0.930 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.199 1.199 24 C 0.022 3.978 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.237 0.763 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.281 8.605 11.825 21.151 hybrid contribution 0.902 0.369 0.169 0.989 sum -14.379 8.974 11.994 20.764 Atomic orbital electron populations 1.21730 0.94392 1.01918 1.02435 1.21537 0.97027 0.96650 1.01538 1.21766 0.90178 0.97914 1.04604 1.23122 0.95573 0.94176 0.84350 0.90896 1.21991 0.95775 0.95245 1.04220 1.21799 0.96431 1.01503 1.01008 1.86567 1.35281 1.65294 1.39196 1.19650 0.78959 0.74352 0.86658 1.90737 1.60459 1.59377 1.32267 1.19141 1.00230 1.19383 0.94743 1.24510 0.99528 0.95706 0.89480 1.77157 0.96582 1.19721 1.22000 1.49166 1.16543 1.39813 1.05494 1.19435 0.79970 0.90733 0.95044 1.21362 1.02565 0.92971 1.42753 0.92951 1.25713 0.99953 0.97142 0.94792 1.69985 1.28161 1.13230 1.43967 0.85414 0.77808 0.78506 0.78859 1.19060 1.19723 1.19901 1.21946 0.95430 0.92952 0.87508 1.20630 0.96619 1.03165 0.94264 0.92864 0.91619 0.92311 0.93185 0.92562 0.87596 0.90129 0.90547 0.87710 0.95570 0.91681 0.92871 0.76254 0.94863 0.92732 0.91588 0.89434 0.87690 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.17 5.83 30.59 0.18 -2.00 16 3 C -0.11 -1.60 4.93 30.59 0.15 -1.45 16 4 C 0.08 1.72 2.25 30.59 0.07 1.79 16 5 H 0.07 1.71 7.16 -2.39 -0.02 1.70 16 6 C -0.14 -2.47 5.65 30.59 0.17 -2.29 16 7 C -0.15 -3.54 8.56 71.98 0.62 -2.92 16 8 O -0.35 -9.50 9.21 -56.61 -0.52 -10.02 16 9 C 0.56 18.45 6.41 70.20 0.45 18.90 16 10 O -0.54 -18.72 12.03 19.74 0.24 -18.48 16 11 C -0.32 -12.00 6.13 -20.16 -0.12 -12.12 16 12 C 0.09 3.44 11.87 85.67 1.02 4.45 16 13 N -0.34 -14.86 12.50 -56.25 -0.70 -15.56 16 14 N -0.33 -15.48 3.56 -336.68 -1.20 -16.68 16 15 C 0.27 13.67 5.97 85.64 0.51 14.18 16 16 C -0.56 -30.62 9.39 25.60 0.24 -30.38 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 18 C 0.03 1.38 5.46 84.66 0.46 1.84 16 19 N -0.92 -50.88 13.29 21.45 0.28 -50.60 16 20 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.16 6.48 7.01 42.16 0.30 6.77 16 25 C -0.09 -3.15 9.56 71.23 0.68 -2.46 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.03 0.76 6.06 -2.39 -0.01 0.75 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.33 7.79 -2.38 -0.02 1.31 16 38 H 0.22 5.99 8.06 -2.91 -0.02 5.97 16 39 H 0.03 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 2.77 7.00 -2.39 -0.02 2.75 16 41 H 0.27 14.31 8.31 -92.70 -0.77 13.53 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.10 3.43 6.52 -2.38 -0.02 3.41 16 44 H 0.08 2.67 7.04 -2.39 -0.02 2.66 16 Total: -1.00 -62.80 363.51 6.53 -56.27 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.97 Total: 17.56 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.43 Total: -6.88 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.62 Total: -82.84 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.28 Total: -28.51 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -62.80 6.53 -56.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892861133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.094 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds