Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50711 * 109.47232 * 2 1 4 4 N 1.34631 * 125.89199 * 265.31170 * 3 2 1 5 5 H 0.96996 * 124.81537 * 359.97438 * 4 3 2 6 6 C 1.36431 * 110.37361 * 180.14145 * 4 3 2 7 7 C 1.50699 * 125.45448 * 179.85259 * 6 4 3 8 8 N 1.46903 * 109.47248 * 275.03150 * 7 6 4 9 9 C 1.46893 * 111.00423 * 164.03034 * 8 7 6 10 10 C 1.53002 * 109.47236 * 287.54642 * 9 8 7 11 11 C 1.46899 * 110.99750 * 287.98598 * 8 7 6 12 12 C 1.50700 * 109.47101 * 169.99667 * 11 8 7 13 13 H 1.08006 * 119.99810 * 0.02562 * 12 11 8 14 14 C 1.37877 * 120.00219 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00014 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47299 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46966 * 120.00083 * 16 14 12 19 19 H 1.48505 * 109.46950 * 239.99479 * 16 14 12 20 20 C 1.34431 * 109.08724 * 359.58774 * 6 4 3 21 21 C 1.37846 * 125.89477 * 84.99898 * 3 2 1 22 22 C 1.47105 * 127.02652 * 359.97438 * 21 3 2 23 23 O 1.21552 * 119.99903 * 0.02562 * 22 21 3 24 24 O 1.34782 * 120.00142 * 180.02562 * 22 21 3 25 25 C 1.45192 * 117.00056 * 180.02562 * 24 22 21 26 26 H 1.09001 * 109.47399 * 300.00505 * 1 2 3 27 27 H 1.09000 * 109.47056 * 59.99659 * 1 2 3 28 28 H 1.08996 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47515 * 240.00234 * 2 1 3 30 30 H 1.09005 * 109.47303 * 119.99669 * 2 1 3 31 31 H 1.08994 * 109.47217 * 155.03455 * 7 6 4 32 32 H 1.09002 * 109.47358 * 35.02890 * 7 6 4 33 33 H 1.09009 * 109.47153 * 47.53942 * 9 8 7 34 34 H 1.08998 * 109.47720 * 167.54306 * 9 8 7 35 35 H 1.09008 * 109.46979 * 305.94027 * 10 9 8 36 36 H 1.08998 * 109.47348 * 65.93836 * 10 9 8 37 37 H 1.09001 * 109.47159 * 185.94353 * 10 9 8 38 38 H 1.08992 * 109.47190 * 289.99711 * 11 8 7 39 39 H 1.08998 * 109.47157 * 49.99993 * 11 8 7 40 40 H 0.96998 * 120.00242 * 180.02562 * 15 14 12 41 41 H 1.07999 * 126.81223 * 180.20953 * 20 6 4 42 42 H 1.08997 * 109.47119 * 299.99960 * 25 24 22 43 43 H 1.09000 * 109.47738 * 59.99917 * 25 24 22 44 44 H 1.09002 * 109.47258 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3795 2.1353 -1.0870 5 1 2.3436 1.8081 -1.9994 6 6 2.7925 3.3836 -0.7230 7 6 3.2598 4.4601 -1.6684 8 7 4.6884 4.2735 -1.9555 9 6 5.0929 5.0448 -3.1383 10 6 4.5244 4.3851 -4.3963 11 6 5.5100 4.6269 -0.7902 12 6 6.9338 4.1953 -1.0300 13 1 7.2016 3.7076 -1.9557 14 6 7.8948 4.4240 -0.0681 15 7 7.5689 5.0183 1.0588 16 14 9.6599 3.8896 -0.3658 17 1 9.7644 3.2481 -1.7009 18 1 10.5515 5.0760 -0.3149 19 1 10.0667 2.9194 0.6824 20 6 2.7105 3.5014 0.6136 21 6 2.2100 2.2153 1.1124 22 6 1.9499 1.8490 2.5132 23 8 1.5326 0.7400 2.7840 24 8 2.1743 2.7432 3.4964 25 6 1.8961 2.3128 4.8549 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1059 5.4373 -1.2109 32 1 2.6918 4.4000 -2.5968 33 1 4.7100 6.0622 -3.0570 34 1 6.1807 5.0699 -3.2013 35 1 4.8214 3.3366 -4.4227 36 1 3.4367 4.4544 -4.3830 37 1 4.9101 4.8943 -5.2796 38 1 5.4783 5.7055 -0.6370 39 1 5.1217 4.1226 0.0946 40 1 8.2450 5.1795 1.7354 41 1 2.9632 4.3701 1.2034 42 1 0.8444 2.0402 4.9415 43 1 2.5163 1.4497 5.0969 44 1 2.1185 3.1257 5.5463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893923138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -51.356580 kcal Electronic energy + Delta-G solvation = -24185.029012 eV Core-core repulsion = 20716.908674 eV Total energy + Delta-G solvation = -3468.120339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09990 -39.53715 -36.94030 -35.99091 -33.57350 -32.61125 -30.99741 -30.59231 -28.97518 -27.57202 -26.63836 -24.58477 -23.69349 -22.39315 -21.86088 -20.28354 -19.79555 -19.31919 -17.15345 -16.44626 -16.25284 -15.96741 -15.66425 -14.93458 -14.72576 -14.31561 -14.15879 -13.92427 -13.63983 -13.26210 -13.21523 -12.86201 -12.82326 -12.48599 -12.13154 -12.04258 -11.94364 -11.79482 -11.49266 -11.32698 -11.18609 -11.01632 -10.83331 -10.66870 -10.50513 -10.47965 -10.21050 -10.07987 -9.79745 -9.15182 -8.53057 -8.39031 -7.75715 -7.29584 -5.99100 -3.99908 1.77554 2.72076 3.01617 3.32142 3.39879 3.43705 3.55948 3.64855 4.45140 4.81842 4.94512 5.06598 5.23402 5.27907 5.33765 5.35410 5.36648 5.41725 5.49712 5.57803 5.63332 5.69983 5.77726 5.87162 5.88788 5.98890 6.01824 6.04695 6.19656 6.27240 6.28080 6.46507 6.61939 6.73208 6.77645 7.10684 7.28469 7.34237 7.37955 7.71881 7.81300 8.12469 8.19795 8.22738 8.54563 9.06951 9.63563 11.11686 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.005017 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.335315 B = 5580.068623 C = 6973.338820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C 0.115 3.885 4 N -0.529 5.529 5 H 0.415 0.585 6 C 0.041 3.959 7 C 0.115 3.885 8 N -0.535 5.535 9 C 0.055 3.945 10 C -0.145 4.145 11 C 0.189 3.811 12 C -0.507 4.507 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.130 4.130 21 C -0.229 4.229 22 C 0.545 3.455 23 O -0.531 6.531 24 O -0.351 6.351 25 C 0.039 3.961 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.049 0.951 38 H -0.010 1.010 39 H 0.042 0.958 40 H 0.260 0.740 41 H 0.148 0.852 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 -4.921 -2.494 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.005 4.005 4 N -0.123 5.123 5 H 0.252 0.748 6 C -0.068 4.068 7 C -0.014 4.014 8 N -0.260 5.260 9 C -0.073 4.073 10 C -0.203 4.203 11 C 0.064 3.936 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.154 4.154 21 C -0.238 4.238 22 C 0.393 3.607 23 O -0.423 6.423 24 O -0.267 6.267 25 C -0.055 4.055 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.166 0.834 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.969 -5.644 -2.451 15.264 hybrid contribution 1.002 0.422 0.003 1.088 sum -12.967 -5.222 -2.448 14.191 Atomic orbital electron populations 1.21654 0.94231 1.01770 1.02047 1.20275 0.96408 0.89291 1.04011 1.20372 1.00448 0.94032 0.85606 1.41395 1.50786 1.11626 1.08478 0.74807 1.20104 1.05249 0.86662 0.94823 1.20555 0.91890 0.93209 0.95726 1.62205 1.00386 1.56499 1.06889 1.21979 1.02029 0.93505 0.89787 1.21826 0.99627 1.01554 0.97261 1.19822 0.91962 0.94237 0.87573 1.21157 0.92562 1.38100 1.02732 0.92046 1.24958 0.98946 0.95435 0.95129 1.69964 1.33776 1.42660 1.06986 0.86512 0.84846 0.78249 0.78217 1.19781 1.21149 1.21059 1.21827 1.03726 0.97269 0.92552 1.19212 1.18908 0.97128 0.88514 1.20168 0.73249 0.81844 0.85431 1.90755 1.44780 1.22267 1.84494 1.86627 1.79441 1.44000 1.16666 1.23169 1.01136 1.01464 0.79718 0.91960 0.93207 0.92186 0.91194 0.88166 0.93094 0.91288 0.96218 0.89382 0.92271 0.93991 0.93230 0.99252 0.93968 0.93024 0.83413 0.92376 0.92154 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.15 0.37 -1.14 16 2 C -0.06 -0.77 5.81 -27.88 -0.16 -0.93 16 3 C 0.12 1.76 6.47 -81.50 -0.53 1.24 16 4 N -0.53 -7.66 5.89 -5.20 -0.03 -7.69 16 5 H 0.42 4.78 8.96 -40.82 -0.37 4.41 16 6 C 0.04 0.70 6.08 -81.89 -0.50 0.20 16 7 C 0.12 1.93 5.34 -4.98 -0.03 1.90 16 8 N -0.53 -10.82 4.39 -237.52 -1.04 -11.86 16 9 C 0.06 1.00 5.53 -3.83 -0.02 0.98 16 10 C -0.14 -2.06 9.88 37.16 0.37 -1.69 16 11 C 0.19 4.79 4.57 -4.98 -0.02 4.77 16 12 C -0.51 -14.08 8.28 -34.44 -0.29 -14.36 16 13 H 0.06 1.70 7.26 -52.48 -0.38 1.31 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 16 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.13 -2.41 9.73 -37.49 -0.36 -2.77 16 21 C -0.23 -4.07 6.33 -103.01 -0.65 -4.73 16 22 C 0.54 9.72 7.95 34.33 0.27 9.99 16 23 O -0.53 -9.58 14.66 -19.31 -0.28 -9.86 16 24 O -0.35 -5.93 10.47 -40.71 -0.43 -6.36 16 25 C 0.04 0.49 10.57 101.05 1.07 1.55 16 26 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.40 6.79 -51.93 -0.35 1.05 16 31 H 0.05 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.07 0.97 6.42 -51.93 -0.33 0.63 16 33 H 0.02 0.34 8.05 -51.92 -0.42 -0.07 16 34 H 0.09 1.80 6.58 -51.93 -0.34 1.46 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.04 0.53 6.77 -51.93 -0.35 0.17 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 39 H 0.04 1.16 6.36 -51.93 -0.33 0.83 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -32.29 364.33 -8.23 -40.52 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.07 Total: 2.40 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.58 Total: -3.48 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.34 Total: -45.42 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.71 Total: -16.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.29 -8.23 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893923138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.839 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds