Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50711 * 109.47232 * 2 1 4 4 N 1.34631 * 125.89199 * 265.31170 * 3 2 1 5 5 H 0.96996 * 124.81537 * 359.97438 * 4 3 2 6 6 C 1.36431 * 110.37361 * 180.14145 * 4 3 2 7 7 C 1.50699 * 125.45448 * 179.85259 * 6 4 3 8 8 N 1.46903 * 109.47248 * 275.03150 * 7 6 4 9 9 C 1.46893 * 111.00423 * 164.03034 * 8 7 6 10 10 C 1.53002 * 109.47236 * 287.54642 * 9 8 7 11 11 C 1.46899 * 110.99750 * 287.98598 * 8 7 6 12 12 C 1.50700 * 109.47101 * 169.99667 * 11 8 7 13 13 H 1.08006 * 119.99810 * 0.02562 * 12 11 8 14 14 C 1.37877 * 120.00219 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00014 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47299 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46966 * 120.00083 * 16 14 12 19 19 H 1.48505 * 109.46950 * 239.99479 * 16 14 12 20 20 C 1.34431 * 109.08724 * 359.58774 * 6 4 3 21 21 C 1.37846 * 125.89477 * 84.99898 * 3 2 1 22 22 C 1.47105 * 127.02652 * 359.97438 * 21 3 2 23 23 O 1.21552 * 119.99903 * 0.02562 * 22 21 3 24 24 O 1.34782 * 120.00142 * 180.02562 * 22 21 3 25 25 C 1.45192 * 117.00056 * 180.02562 * 24 22 21 26 26 H 1.09001 * 109.47399 * 300.00505 * 1 2 3 27 27 H 1.09000 * 109.47056 * 59.99659 * 1 2 3 28 28 H 1.08996 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47515 * 240.00234 * 2 1 3 30 30 H 1.09005 * 109.47303 * 119.99669 * 2 1 3 31 31 H 1.08994 * 109.47217 * 155.03455 * 7 6 4 32 32 H 1.09002 * 109.47358 * 35.02890 * 7 6 4 33 33 H 1.09009 * 109.47153 * 47.53942 * 9 8 7 34 34 H 1.08998 * 109.47720 * 167.54306 * 9 8 7 35 35 H 1.09008 * 109.46979 * 305.94027 * 10 9 8 36 36 H 1.08998 * 109.47348 * 65.93836 * 10 9 8 37 37 H 1.09001 * 109.47159 * 185.94353 * 10 9 8 38 38 H 1.08992 * 109.47190 * 289.99711 * 11 8 7 39 39 H 1.08998 * 109.47157 * 49.99993 * 11 8 7 40 40 H 0.96998 * 120.00242 * 180.02562 * 15 14 12 41 41 H 1.07999 * 126.81223 * 180.20953 * 20 6 4 42 42 H 1.08997 * 109.47119 * 299.99960 * 25 24 22 43 43 H 1.09000 * 109.47738 * 59.99917 * 25 24 22 44 44 H 1.09002 * 109.47258 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3795 2.1353 -1.0870 5 1 2.3436 1.8081 -1.9994 6 6 2.7925 3.3836 -0.7230 7 6 3.2598 4.4601 -1.6684 8 7 4.6884 4.2735 -1.9555 9 6 5.0929 5.0448 -3.1383 10 6 4.5244 4.3851 -4.3963 11 6 5.5100 4.6269 -0.7902 12 6 6.9338 4.1953 -1.0300 13 1 7.2016 3.7076 -1.9557 14 6 7.8948 4.4240 -0.0681 15 7 7.5689 5.0183 1.0588 16 14 9.6599 3.8896 -0.3658 17 1 9.7644 3.2481 -1.7009 18 1 10.5515 5.0760 -0.3149 19 1 10.0667 2.9194 0.6824 20 6 2.7105 3.5014 0.6136 21 6 2.2100 2.2153 1.1124 22 6 1.9499 1.8490 2.5132 23 8 1.5326 0.7400 2.7840 24 8 2.1743 2.7432 3.4964 25 6 1.8961 2.3128 4.8549 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1059 5.4373 -1.2109 32 1 2.6918 4.4000 -2.5968 33 1 4.7100 6.0622 -3.0570 34 1 6.1807 5.0699 -3.2013 35 1 4.8214 3.3366 -4.4227 36 1 3.4367 4.4544 -4.3830 37 1 4.9101 4.8943 -5.2796 38 1 5.4783 5.7055 -0.6370 39 1 5.1217 4.1226 0.0946 40 1 8.2450 5.1795 1.7354 41 1 2.9632 4.3701 1.2034 42 1 0.8444 2.0402 4.9415 43 1 2.5163 1.4497 5.0969 44 1 2.1185 3.1257 5.5463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893923138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -71.811352 kcal Electronic energy + Delta-G solvation = -24185.915998 eV Core-core repulsion = 20716.908674 eV Total energy + Delta-G solvation = -3469.007324 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38752 -40.84484 -38.52008 -37.30603 -34.84140 -34.52417 -32.30307 -31.89627 -30.59012 -28.77795 -28.17555 -26.07452 -24.90728 -24.15369 -23.04189 -21.76922 -21.20568 -20.61947 -18.52199 -18.46256 -17.58472 -17.24023 -16.90296 -16.69573 -16.23097 -15.75600 -15.46858 -15.30642 -14.90780 -14.55963 -14.42356 -14.26927 -14.06164 -14.02590 -13.71287 -13.52377 -13.10490 -13.03661 -12.83154 -12.71003 -12.55740 -12.51015 -12.31377 -12.30135 -11.93750 -11.78753 -11.69758 -11.55798 -11.37420 -11.18038 -10.58514 -9.84409 -9.14212 -8.93023 -8.16613 -6.25317 0.47514 1.34423 1.39503 1.40905 1.53180 1.83148 2.26811 2.36347 2.41652 3.16424 3.43223 3.71991 3.90787 4.07412 4.18544 4.22184 4.32599 4.34019 4.35365 4.42166 4.51982 4.57313 4.62776 4.68550 4.68886 4.78963 4.86627 4.94132 5.07020 5.08362 5.17927 5.24660 5.25372 5.34764 5.43974 5.49290 5.49835 5.67608 5.74381 5.97791 6.11656 6.39371 6.57938 6.66696 6.90451 6.91614 7.43375 8.94399 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.005017 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.335315 B = 5580.068623 C = 6973.338820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C 0.134 3.866 4 N -0.514 5.514 5 H 0.433 0.567 6 C 0.038 3.962 7 C 0.118 3.882 8 N -0.536 5.536 9 C 0.052 3.948 10 C -0.132 4.132 11 C 0.207 3.793 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.962 3.038 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.283 1.283 20 C -0.157 4.157 21 C -0.264 4.264 22 C 0.539 3.461 23 O -0.540 6.540 24 O -0.371 6.371 25 C 0.032 3.968 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.069 0.931 38 H -0.042 1.042 39 H 0.014 0.986 40 H 0.262 0.738 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 -6.318 -4.746 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C 0.012 3.988 4 N -0.109 5.109 5 H 0.273 0.727 6 C -0.072 4.072 7 C -0.010 4.010 8 N -0.261 5.261 9 C -0.076 4.076 10 C -0.190 4.190 11 C 0.080 3.920 12 C -0.556 4.556 13 H 0.079 0.921 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.209 1.209 20 C -0.181 4.181 21 C -0.273 4.273 22 C 0.388 3.612 23 O -0.433 6.433 24 O -0.288 6.288 25 C -0.062 4.062 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.088 0.912 38 H -0.024 1.024 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.549 -7.041 -4.743 16.845 hybrid contribution 1.123 0.883 0.736 1.608 sum -13.425 -6.158 -4.007 15.304 Atomic orbital electron populations 1.21613 0.92701 1.03080 1.01689 1.20396 0.97582 0.87158 1.04700 1.20836 0.98179 0.94858 0.84906 1.41315 1.49751 1.10559 1.09300 0.72664 1.20032 1.05168 0.87715 0.94257 1.20622 0.90071 0.92865 0.97471 1.62114 1.01649 1.56813 1.05543 1.22044 1.00646 0.94215 0.90692 1.21720 1.00935 1.00925 0.95399 1.19396 0.92076 0.91663 0.88832 1.21489 0.93876 1.37688 1.02592 0.92052 1.25852 1.03468 0.95467 0.94837 1.70100 1.35256 1.43957 1.07984 0.85438 0.79454 0.77951 0.78409 1.18610 1.20393 1.20938 1.21804 1.05229 0.97453 0.93590 1.19484 1.20747 0.97524 0.89500 1.20275 0.73205 0.81885 0.85806 1.90726 1.45438 1.22406 1.84730 1.86607 1.79450 1.44425 1.18306 1.23494 1.01953 1.02651 0.78052 0.94194 0.91666 0.90060 0.88118 0.89777 0.93780 0.87309 0.95793 0.92290 0.92674 0.91626 0.91178 1.02433 0.96792 0.92936 0.85516 0.91203 0.92213 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.06 -1.38 5.81 29.85 0.17 -1.20 16 3 C 0.13 3.96 6.47 42.04 0.27 4.23 16 4 N -0.51 -13.98 5.89 -170.36 -1.00 -14.99 16 5 H 0.43 8.54 8.96 -92.71 -0.83 7.71 16 6 C 0.04 1.29 6.08 40.97 0.25 1.54 16 7 C 0.12 3.86 5.34 85.56 0.46 4.31 16 8 N -0.54 -21.58 4.39 -905.39 -3.98 -25.56 16 9 C 0.05 1.83 5.53 86.31 0.48 2.30 16 10 C -0.13 -3.32 9.88 71.98 0.71 -2.61 16 11 C 0.21 10.88 4.57 85.56 0.39 11.27 16 12 C -0.52 -29.33 8.28 25.60 0.21 -29.12 16 13 H 0.06 3.40 7.26 -2.91 -0.02 3.38 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 16 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 C -0.16 -6.08 9.73 23.62 0.23 -5.85 16 21 C -0.26 -9.65 6.33 -18.82 -0.12 -9.77 16 22 C 0.54 19.91 7.95 70.15 0.56 20.46 16 23 O -0.54 -19.79 14.66 19.67 0.29 -19.51 16 24 O -0.37 -13.09 10.47 -56.94 -0.60 -13.69 16 25 C 0.03 0.79 10.57 113.37 1.20 1.99 16 26 H 0.04 0.95 8.01 -2.39 -0.02 0.93 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.26 6.79 -2.38 -0.02 2.24 16 31 H 0.04 1.52 8.05 -2.39 -0.02 1.50 16 32 H 0.11 2.69 6.42 -2.39 -0.02 2.67 16 33 H 0.02 0.82 8.05 -2.38 -0.02 0.80 16 34 H 0.06 2.41 6.58 -2.39 -0.02 2.40 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.35 6.77 -2.39 -0.02 1.33 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H -0.04 -2.43 8.12 -2.39 -0.02 -2.44 16 39 H 0.01 0.81 6.36 -2.39 -0.02 0.80 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -72.68 364.33 3.17 -69.51 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.16 Total: 17.87 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.98 Total: -3.74 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.70 Total: -97.40 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.31 Total: -33.20 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.68 3.17 -69.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893923138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds