Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47009 * 2 1 4 4 N 1.34630 * 125.89557 * 265.30864 * 3 2 1 5 5 H 0.96993 * 124.81193 * 359.97438 * 4 3 2 6 6 C 1.36426 * 110.37571 * 180.14457 * 4 3 2 7 7 C 1.50706 * 125.45488 * 179.85151 * 6 4 3 8 8 N 1.46893 * 109.47176 * 274.72332 * 7 6 4 9 9 C 1.46901 * 110.99883 * 293.94754 * 8 7 6 10 10 C 1.46899 * 111.00143 * 169.99759 * 8 7 6 11 11 H 1.08998 * 109.47358 * 310.00253 * 10 8 7 12 12 C 1.53002 * 109.46950 * 69.99620 * 10 8 7 13 13 C 1.50703 * 109.47387 * 189.99525 * 10 8 7 14 14 H 1.07997 * 119.99501 * 0.02562 * 13 10 8 15 15 C 1.37878 * 120.00008 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99829 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00111 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46672 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47037 * 120.00273 * 17 15 13 20 20 H 1.48498 * 109.47193 * 240.00768 * 17 15 13 21 21 C 1.34438 * 109.08998 * 359.59264 * 6 4 3 22 22 C 1.37848 * 125.89600 * 85.00422 * 3 2 1 23 23 C 1.47109 * 127.02423 * 359.97438 * 22 3 2 24 24 O 1.21558 * 119.99818 * 0.02562 * 23 22 3 25 25 O 1.34781 * 120.00192 * 180.02562 * 23 22 3 26 26 C 1.45196 * 117.00452 * 180.02562 * 25 23 22 27 27 H 1.08994 * 109.47281 * 60.00042 * 1 2 3 28 28 H 1.08995 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47206 * 299.99971 * 1 2 3 30 30 H 1.08992 * 109.46859 * 239.99703 * 2 1 3 31 31 H 1.09002 * 109.46974 * 120.00125 * 2 1 3 32 32 H 1.09001 * 109.46953 * 34.71792 * 7 6 4 33 33 H 1.09000 * 109.47318 * 154.71390 * 7 6 4 34 34 H 1.09007 * 109.47214 * 60.00587 * 9 8 7 35 35 H 1.09002 * 109.47259 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.47697 * 300.00606 * 9 8 7 37 37 H 1.09005 * 109.47325 * 180.02562 * 12 10 8 38 38 H 1.08997 * 109.47238 * 300.00036 * 12 10 8 39 39 H 1.09004 * 109.47404 * 60.00311 * 12 10 8 40 40 H 0.97009 * 120.00010 * 179.97438 * 16 15 13 41 41 H 1.07993 * 126.81053 * 180.27875 * 21 6 4 42 42 H 1.09003 * 109.47118 * 300.00420 * 26 25 23 43 43 H 1.09004 * 109.47255 * 59.99816 * 26 25 23 44 44 H 1.08990 * 109.47317 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3795 2.1353 -1.0870 5 1 2.3436 1.8081 -1.9993 6 6 2.7926 3.3835 -0.7229 7 6 3.2599 4.4601 -1.6683 8 7 4.6901 4.2778 -1.9495 9 6 5.4965 4.4993 -0.7418 10 6 5.1277 5.1557 -3.0430 11 1 4.4483 5.0492 -3.8886 12 6 5.1217 6.6087 -2.5639 13 6 6.5220 4.7725 -3.4675 14 1 7.0318 3.9580 -2.9745 15 6 7.1464 5.4611 -4.4858 16 7 6.5253 6.4527 -5.0864 17 14 8.8744 4.9857 -5.0126 18 1 9.3482 3.8470 -4.1855 19 1 8.8641 4.5886 -6.4434 20 1 9.7848 6.1441 -4.8268 21 6 2.7105 3.5013 0.6138 22 6 2.2100 2.2152 1.1124 23 6 1.9501 1.8489 2.5133 24 8 1.5328 0.7397 2.7840 25 8 2.1745 2.7430 3.4965 26 6 1.8965 2.3126 4.8551 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.6957 4.3964 -2.5988 33 1 3.1007 5.4376 -1.2131 34 1 5.1986 3.7888 0.0294 35 1 6.5512 4.3584 -0.9782 36 1 5.3380 5.5153 -0.3803 37 1 5.4460 7.2603 -3.3753 38 1 4.1133 6.8859 -2.2568 39 1 5.8012 6.7154 -1.7182 40 1 6.9646 6.9374 -5.8026 41 1 2.9624 4.3703 1.2034 42 1 0.8447 2.0398 4.9417 43 1 2.5167 1.4495 5.0969 44 1 2.1188 3.1254 5.5463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894000902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -45.500511 kcal Electronic energy + Delta-G solvation = -23959.684698 eV Core-core repulsion = 20491.818298 eV Total energy + Delta-G solvation = -3467.866400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30037 -39.75835 -37.19087 -36.22039 -33.80615 -32.71155 -31.17676 -29.93196 -28.10059 -27.71466 -26.30584 -25.25356 -24.08543 -23.40617 -21.83549 -20.30907 -19.53295 -19.27784 -17.33401 -16.53585 -16.21064 -15.98229 -15.86384 -15.33990 -14.56443 -14.42277 -14.25250 -13.76592 -13.66591 -13.47059 -13.15064 -13.07119 -12.73999 -12.58890 -12.23764 -12.19547 -11.91064 -11.50883 -11.47384 -11.11651 -11.06808 -10.96694 -10.80782 -10.71711 -10.69492 -10.50375 -10.27762 -10.08317 -9.86757 -8.94826 -8.74759 -8.42864 -7.96001 -7.22563 -6.05071 -4.08716 1.57155 2.53266 2.79382 3.27483 3.35729 3.38797 3.40804 3.42288 4.38953 4.67393 4.91592 4.95555 5.06326 5.12680 5.16040 5.23475 5.26503 5.29647 5.41352 5.46658 5.50432 5.74233 5.80742 5.87836 6.01367 6.04619 6.12408 6.24537 6.26837 6.39620 6.54628 6.64135 6.79288 6.88374 6.89534 7.06209 7.13240 7.39830 7.54435 7.67466 7.79728 8.00376 8.05798 8.32462 8.52446 8.97691 9.56658 11.01917 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.003366 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.256308 B = 8316.474923 C = 8773.290648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C 0.118 3.882 4 N -0.528 5.528 5 H 0.420 0.580 6 C 0.045 3.955 7 C 0.113 3.887 8 N -0.532 5.532 9 C 0.033 3.967 10 C 0.210 3.790 11 H 0.038 0.962 12 C -0.173 4.173 13 C -0.497 4.497 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.147 4.147 22 C -0.232 4.232 23 C 0.543 3.457 24 O -0.528 6.528 25 O -0.355 6.355 26 C 0.039 3.961 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.018 0.982 37 H 0.088 0.912 38 H 0.007 0.993 39 H 0.033 0.967 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 -7.940 12.429 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.002 4.002 4 N -0.122 5.122 5 H 0.257 0.743 6 C -0.065 4.065 7 C -0.016 4.016 8 N -0.256 5.256 9 C -0.115 4.115 10 C 0.105 3.895 11 H 0.055 0.945 12 C -0.232 4.232 13 C -0.536 4.536 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.171 4.171 22 C -0.241 4.241 23 C 0.391 3.609 24 O -0.419 6.419 25 O -0.271 6.271 26 C -0.055 4.055 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.107 0.893 38 H 0.026 0.974 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.158 -8.600 12.091 18.565 hybrid contribution 0.847 0.568 -0.317 1.068 sum -10.310 -8.032 11.774 17.591 Atomic orbital electron populations 1.21658 0.94071 1.01932 1.02137 1.20298 0.96595 0.89171 1.04073 1.20452 1.00009 0.94196 0.85577 1.41534 1.50188 1.11611 1.08827 0.74285 1.20395 1.04461 0.86770 0.94836 1.20603 0.92248 0.92638 0.96137 1.62395 0.99359 1.56033 1.07815 1.22262 0.99353 0.97971 0.91950 1.19343 0.96371 0.86324 0.87506 0.94453 1.22414 0.96421 1.02605 1.01775 1.21128 0.99089 1.16084 1.17312 0.91908 1.24925 0.98043 0.95059 0.96288 1.69893 1.37478 1.21563 1.24495 0.86470 0.84377 0.78366 0.78375 1.19745 1.21096 1.21148 1.21761 1.05638 0.97143 0.92545 1.19199 1.19318 0.97099 0.88477 1.20179 0.73448 0.81877 0.85367 1.90778 1.44447 1.22277 1.84419 1.86596 1.79596 1.44171 1.16746 1.23180 1.01424 1.01387 0.79554 0.93039 0.92059 0.92002 0.91001 0.88189 0.90699 0.92871 0.93284 0.90990 0.96322 0.89323 0.97417 0.94813 0.93048 0.83638 0.92224 0.92149 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.06 -0.69 5.81 -27.88 -0.16 -0.86 16 3 C 0.12 1.58 6.47 -81.51 -0.53 1.05 16 4 N -0.53 -6.98 5.89 -5.20 -0.03 -7.01 16 5 H 0.42 4.69 8.96 -40.82 -0.37 4.32 16 6 C 0.05 0.69 5.88 -81.89 -0.48 0.20 16 7 C 0.11 1.90 5.06 -4.98 -0.03 1.87 16 8 N -0.53 -10.77 4.69 -237.73 -1.12 -11.88 16 9 C 0.03 0.64 8.43 60.07 0.51 1.14 16 10 C 0.21 5.03 2.31 -68.86 -0.16 4.87 16 11 H 0.04 0.97 7.93 -51.93 -0.41 0.56 16 12 C -0.17 -4.01 8.22 37.16 0.31 -3.70 16 13 C -0.50 -13.20 7.91 -34.44 -0.27 -13.47 16 14 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 15 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 16 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.15 -2.23 9.82 -37.49 -0.37 -2.59 16 22 C -0.23 -3.48 6.33 -103.01 -0.65 -4.13 16 23 C 0.54 8.10 7.95 34.33 0.27 8.38 16 24 O -0.53 -8.26 14.66 -19.31 -0.28 -8.54 16 25 O -0.35 -4.79 10.47 -40.71 -0.43 -5.21 16 26 C 0.04 0.37 10.57 101.05 1.07 1.44 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.21 6.79 -51.93 -0.35 0.86 16 32 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.05 0.89 7.06 -51.93 -0.37 0.53 16 34 H 0.05 0.87 6.53 -51.92 -0.34 0.53 16 35 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 36 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 37 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 38 H 0.01 0.14 6.91 -51.93 -0.36 -0.21 16 39 H 0.03 0.76 6.42 -51.93 -0.33 0.43 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -29.78 356.01 -7.93 -37.71 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.83 Total: 3.19 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.22 Total: -5.36 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.52 Total: -43.11 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.71 Total: -13.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.78 -7.93 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894000902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.790 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds