Wall clock time and date at job start Tue Mar 31 2020 06:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47009 * 2 1 4 4 N 1.34630 * 125.89557 * 265.30864 * 3 2 1 5 5 H 0.96993 * 124.81193 * 359.97438 * 4 3 2 6 6 C 1.36426 * 110.37571 * 180.14457 * 4 3 2 7 7 C 1.50706 * 125.45488 * 179.85151 * 6 4 3 8 8 N 1.46893 * 109.47176 * 274.72332 * 7 6 4 9 9 C 1.46901 * 110.99883 * 293.94754 * 8 7 6 10 10 C 1.46899 * 111.00143 * 169.99759 * 8 7 6 11 11 H 1.08998 * 109.47358 * 310.00253 * 10 8 7 12 12 C 1.53002 * 109.46950 * 69.99620 * 10 8 7 13 13 C 1.50703 * 109.47387 * 189.99525 * 10 8 7 14 14 H 1.07997 * 119.99501 * 0.02562 * 13 10 8 15 15 C 1.37878 * 120.00008 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99829 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00111 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46672 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47037 * 120.00273 * 17 15 13 20 20 H 1.48498 * 109.47193 * 240.00768 * 17 15 13 21 21 C 1.34438 * 109.08998 * 359.59264 * 6 4 3 22 22 C 1.37848 * 125.89600 * 85.00422 * 3 2 1 23 23 C 1.47109 * 127.02423 * 359.97438 * 22 3 2 24 24 O 1.21558 * 119.99818 * 0.02562 * 23 22 3 25 25 O 1.34781 * 120.00192 * 180.02562 * 23 22 3 26 26 C 1.45196 * 117.00452 * 180.02562 * 25 23 22 27 27 H 1.08994 * 109.47281 * 60.00042 * 1 2 3 28 28 H 1.08995 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47206 * 299.99971 * 1 2 3 30 30 H 1.08992 * 109.46859 * 239.99703 * 2 1 3 31 31 H 1.09002 * 109.46974 * 120.00125 * 2 1 3 32 32 H 1.09001 * 109.46953 * 34.71792 * 7 6 4 33 33 H 1.09000 * 109.47318 * 154.71390 * 7 6 4 34 34 H 1.09007 * 109.47214 * 60.00587 * 9 8 7 35 35 H 1.09002 * 109.47259 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.47697 * 300.00606 * 9 8 7 37 37 H 1.09005 * 109.47325 * 180.02562 * 12 10 8 38 38 H 1.08997 * 109.47238 * 300.00036 * 12 10 8 39 39 H 1.09004 * 109.47404 * 60.00311 * 12 10 8 40 40 H 0.97009 * 120.00010 * 179.97438 * 16 15 13 41 41 H 1.07993 * 126.81053 * 180.27875 * 21 6 4 42 42 H 1.09003 * 109.47118 * 300.00420 * 26 25 23 43 43 H 1.09004 * 109.47255 * 59.99816 * 26 25 23 44 44 H 1.08990 * 109.47317 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3795 2.1353 -1.0870 5 1 2.3436 1.8081 -1.9993 6 6 2.7926 3.3835 -0.7229 7 6 3.2599 4.4601 -1.6683 8 7 4.6901 4.2778 -1.9495 9 6 5.4965 4.4993 -0.7418 10 6 5.1277 5.1557 -3.0430 11 1 4.4483 5.0492 -3.8886 12 6 5.1217 6.6087 -2.5639 13 6 6.5220 4.7725 -3.4675 14 1 7.0318 3.9580 -2.9745 15 6 7.1464 5.4611 -4.4858 16 7 6.5253 6.4527 -5.0864 17 14 8.8744 4.9857 -5.0126 18 1 9.3482 3.8470 -4.1855 19 1 8.8641 4.5886 -6.4434 20 1 9.7848 6.1441 -4.8268 21 6 2.7105 3.5013 0.6138 22 6 2.2100 2.2152 1.1124 23 6 1.9501 1.8489 2.5133 24 8 1.5328 0.7397 2.7840 25 8 2.1745 2.7430 3.4965 26 6 1.8965 2.3126 4.8551 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.6957 4.3964 -2.5988 33 1 3.1007 5.4376 -1.2131 34 1 5.1986 3.7888 0.0294 35 1 6.5512 4.3584 -0.9782 36 1 5.3380 5.5153 -0.3803 37 1 5.4460 7.2603 -3.3753 38 1 4.1133 6.8859 -2.2568 39 1 5.8012 6.7154 -1.7182 40 1 6.9646 6.9374 -5.8026 41 1 2.9624 4.3703 1.2034 42 1 0.8447 2.0398 4.9417 43 1 2.5167 1.4495 5.0969 44 1 2.1188 3.1254 5.5463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894000902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:36 Heat of formation + Delta-G solvation = -63.217118 kcal Electronic energy + Delta-G solvation = -23960.452948 eV Core-core repulsion = 20491.818298 eV Total energy + Delta-G solvation = -3468.634650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41088 -40.82555 -38.82775 -37.29088 -35.08394 -34.32462 -32.27655 -31.45446 -29.62855 -28.63658 -27.63416 -27.22204 -25.26085 -24.71136 -22.92910 -21.57800 -20.92105 -20.59446 -18.49495 -18.17788 -17.41364 -17.24777 -16.96132 -16.88338 -16.20174 -15.61216 -15.44117 -15.14057 -14.98748 -14.61331 -14.41361 -14.19780 -14.01388 -13.89139 -13.63765 -13.25911 -13.13801 -12.90102 -12.80338 -12.67681 -12.56109 -12.44955 -12.34865 -12.20748 -12.02341 -11.93812 -11.70021 -11.64139 -11.36798 -10.90248 -10.47705 -9.87269 -9.14912 -8.81999 -8.09234 -6.19275 0.48632 1.34657 1.41747 1.45014 1.55681 1.82279 2.28312 2.36058 2.44839 3.20217 3.50118 3.71916 3.89954 4.06758 4.19501 4.27866 4.37474 4.39260 4.40996 4.52350 4.60202 4.67200 4.68199 4.73494 4.81029 4.82880 4.89116 4.94061 4.94799 5.06305 5.17494 5.22968 5.24782 5.32342 5.50386 5.54674 5.71774 5.76230 5.82132 5.99257 6.22237 6.46984 6.53358 6.72160 6.92749 6.94168 7.49938 8.96414 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.003366 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.256308 B = 8316.474923 C = 8773.290648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C 0.131 3.869 4 N -0.521 5.521 5 H 0.429 0.571 6 C 0.034 3.966 7 C 0.119 3.881 8 N -0.539 5.539 9 C 0.042 3.958 10 C 0.216 3.784 11 H 0.013 0.987 12 C -0.160 4.160 13 C -0.511 4.511 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.147 4.147 22 C -0.258 4.258 23 C 0.541 3.459 24 O -0.542 6.542 25 O -0.365 6.365 26 C 0.032 3.968 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.260 0.740 41 H 0.149 0.851 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.485 -8.844 13.039 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C 0.009 3.991 4 N -0.116 5.116 5 H 0.269 0.731 6 C -0.076 4.076 7 C -0.010 4.010 8 N -0.262 5.262 9 C -0.106 4.106 10 C 0.109 3.891 11 H 0.031 0.969 12 C -0.220 4.220 13 C -0.549 4.549 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.171 4.171 22 C -0.266 4.266 23 C 0.390 3.610 24 O -0.435 6.435 25 O -0.282 6.282 26 C -0.062 4.062 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.167 0.833 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.489 -9.504 12.710 19.592 hybrid contribution 0.886 0.820 -0.426 1.280 sum -10.602 -8.684 12.284 18.404 Atomic orbital electron populations 1.21620 0.93090 1.02995 1.01582 1.20386 0.97314 0.87620 1.04688 1.20851 0.98277 0.94905 0.85064 1.41514 1.49651 1.11003 1.09442 0.73110 1.20067 1.05787 0.87256 0.94443 1.20527 0.90044 0.93571 0.96822 1.62260 1.01393 1.55131 1.07442 1.22162 0.98038 0.98636 0.91795 1.19088 0.94682 0.87253 0.88059 0.96934 1.22224 0.97537 1.01618 1.00580 1.21378 1.00381 1.15767 1.17382 0.92845 1.25618 1.01368 0.95096 0.96449 1.70005 1.38783 1.22311 1.24867 0.85554 0.80373 0.78048 0.77917 1.19487 1.20775 1.20839 1.21871 1.05213 0.97458 0.92589 1.19419 1.20567 0.97475 0.89176 1.20223 0.73242 0.81861 0.85718 1.90760 1.45242 1.22766 1.84701 1.86575 1.79396 1.44142 1.18071 1.23495 1.01791 1.02789 0.78085 0.92211 0.90237 0.93876 0.88662 0.89225 0.90353 0.92560 0.91736 0.93022 0.95936 0.92085 0.95271 0.94851 0.93030 0.83294 0.91843 0.92040 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.69 16 2 C -0.06 -1.24 5.81 29.85 0.17 -1.07 16 3 C 0.13 3.28 6.47 42.04 0.27 3.55 16 4 N -0.52 -12.93 5.89 -170.36 -1.00 -13.94 16 5 H 0.43 8.79 8.96 -92.71 -0.83 7.95 16 6 C 0.03 0.99 5.88 40.98 0.24 1.23 16 7 C 0.12 3.87 5.06 85.56 0.43 4.30 16 8 N -0.54 -21.46 4.69 -906.03 -4.25 -25.72 16 9 C 0.04 1.59 8.43 127.69 1.08 2.66 16 10 C 0.22 10.36 2.31 44.17 0.10 10.46 16 11 H 0.01 0.67 7.93 -2.39 -0.02 0.65 16 12 C -0.16 -7.41 8.22 71.98 0.59 -6.81 16 13 C -0.51 -27.22 7.91 25.60 0.20 -27.02 16 14 H 0.05 2.89 7.12 -2.91 -0.02 2.87 16 15 C 0.01 0.71 5.30 84.66 0.45 1.16 16 16 N -0.92 -51.44 11.32 21.45 0.24 -51.20 16 17 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C -0.15 -4.28 9.82 23.62 0.23 -4.05 16 22 C -0.26 -7.45 6.33 -18.82 -0.12 -7.57 16 23 C 0.54 15.72 7.95 70.15 0.56 16.28 16 24 O -0.54 -16.58 14.66 19.65 0.29 -16.30 16 25 O -0.37 -9.49 10.47 -56.92 -0.60 -10.09 16 26 C 0.03 0.55 10.57 113.37 1.20 1.75 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.93 8.01 -2.39 -0.02 0.91 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 2.04 6.79 -2.39 -0.02 2.02 16 32 H 0.08 2.48 7.93 -2.39 -0.02 2.46 16 33 H 0.06 1.81 7.06 -2.39 -0.02 1.79 16 34 H 0.06 2.22 6.53 -2.38 -0.02 2.21 16 35 H 0.05 2.14 6.76 -2.39 -0.02 2.13 16 36 H 0.02 0.82 6.46 -2.39 -0.02 0.80 16 37 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 38 H 0.03 1.17 6.91 -2.39 -0.02 1.16 16 39 H 0.03 1.50 6.42 -2.38 -0.02 1.48 16 40 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 41 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -63.06 356.01 3.00 -60.05 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.17 Total: 18.93 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.12 Total: -6.81 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -5.01 Total: -90.85 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.31 Total: -26.39 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -63.06 3.00 -60.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894000902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds