Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.34625 * 125.90128 * 264.69747 * 3 2 1 5 5 H 0.97005 * 124.80416 * 359.97308 * 4 3 2 6 6 C 1.36427 * 110.37989 * 179.82528 * 4 3 2 7 7 C 1.50706 * 125.45326 * 180.15814 * 6 4 3 8 8 N 1.46896 * 109.47173 * 275.30071 * 7 6 4 9 9 C 1.46908 * 110.99619 * 66.04733 * 8 7 6 10 10 C 1.46899 * 111.00053 * 189.99881 * 8 7 6 11 11 H 1.08998 * 109.46645 * 55.00171 * 10 8 7 12 12 C 1.52998 * 109.47288 * 295.00246 * 10 8 7 13 13 C 1.50703 * 109.47062 * 175.00188 * 10 8 7 14 14 H 1.07992 * 119.99948 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99952 * 180.02562 * 13 10 8 16 16 N 1.31517 * 120.00040 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00070 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47427 * 90.00139 * 17 15 13 19 19 H 1.48503 * 109.47202 * 209.99918 * 17 15 13 20 20 H 1.48497 * 109.47197 * 329.99709 * 17 15 13 21 21 C 1.34432 * 109.08630 * 0.43856 * 6 4 3 22 22 C 1.37849 * 125.89110 * 85.00384 * 3 2 1 23 23 C 1.47107 * 127.02420 * 0.02562 * 22 3 2 24 24 O 1.21545 * 120.00363 * 359.97438 * 23 22 3 25 25 O 1.34792 * 119.99676 * 180.02562 * 23 22 3 26 26 C 1.45198 * 116.99650 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 28 28 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 31 31 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 32 32 H 1.09006 * 109.46879 * 35.30449 * 7 6 4 33 33 H 1.09000 * 109.46646 * 155.30167 * 7 6 4 34 34 H 1.08997 * 109.46787 * 60.00373 * 9 8 7 35 35 H 1.09000 * 109.46654 * 180.02562 * 9 8 7 36 36 H 1.08992 * 109.47249 * 300.00013 * 9 8 7 37 37 H 1.09006 * 109.47167 * 59.99965 * 12 10 8 38 38 H 1.09001 * 109.47285 * 179.97438 * 12 10 8 39 39 H 1.08996 * 109.47488 * 300.00039 * 12 10 8 40 40 H 0.96999 * 120.00028 * 180.02562 * 16 15 13 41 41 H 1.08003 * 126.80841 * 179.74030 * 21 6 4 42 42 H 1.09005 * 109.46991 * 60.00627 * 26 25 23 43 43 H 1.09007 * 109.46670 * 180.02562 * 26 25 23 44 44 H 1.08995 * 109.47599 * 299.99746 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3906 2.1315 -1.0858 5 1 2.3638 1.8009 -1.9974 6 6 2.7933 3.3833 -0.7227 7 6 3.2619 4.4594 -1.6680 8 7 4.6923 4.2764 -1.9478 9 6 4.9282 3.0314 -2.6911 10 6 5.2395 5.4325 -2.6703 11 1 5.0348 6.3430 -2.1071 12 6 4.5851 5.5282 -4.0499 13 6 6.7286 5.2654 -2.8312 14 1 7.2194 4.3884 -2.4359 15 6 7.4645 6.2327 -3.4822 16 7 6.8669 7.3010 -3.9631 17 14 9.3101 6.0253 -3.6823 18 1 9.5930 5.3087 -4.9517 19 1 9.9579 7.3612 -3.7131 20 1 9.8467 5.2413 -2.5410 21 6 2.7109 3.5011 0.6139 22 6 2.2101 2.2151 1.1125 23 6 1.9511 1.8483 2.5134 24 8 1.5339 0.7393 2.7841 25 8 2.1754 2.7425 3.4967 26 6 1.8972 2.3120 4.8552 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.6984 4.3959 -2.5989 33 1 3.1029 5.4371 -1.2130 34 1 4.3885 3.0654 -3.6374 35 1 5.9951 2.9204 -2.8846 36 1 4.5761 2.1845 -2.1022 37 1 3.5080 5.6491 -3.9336 38 1 4.9908 6.3863 -4.5859 39 1 4.7897 4.6177 -4.6132 40 1 7.3845 7.9814 -4.4214 41 1 2.9634 4.3700 1.2037 42 1 2.5176 1.4490 5.0970 43 1 2.1195 3.1249 5.5466 44 1 0.8455 2.0393 4.9418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894000904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -42.931274 kcal Electronic energy + Delta-G solvation = -23961.604189 eV Core-core repulsion = 20493.849199 eV Total energy + Delta-G solvation = -3467.754990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32594 -39.74860 -37.20974 -36.19872 -33.81795 -32.71065 -31.19779 -29.92160 -28.34369 -27.62440 -26.26225 -25.21514 -23.96725 -23.65801 -21.85325 -20.26028 -19.54196 -19.33676 -17.32418 -16.51919 -16.18562 -16.03054 -15.87276 -15.39428 -14.71465 -14.31799 -14.10798 -13.98208 -13.68719 -13.45017 -13.17347 -13.02589 -12.70929 -12.59893 -12.22737 -12.18448 -11.79952 -11.64897 -11.45015 -11.19254 -11.13526 -11.03724 -10.83834 -10.71321 -10.68139 -10.55430 -10.26780 -10.08852 -9.92656 -8.95647 -8.73536 -8.43117 -7.94922 -7.23914 -6.05034 -4.08924 1.57076 2.54842 2.80262 3.28583 3.35739 3.36203 3.40279 3.44374 4.39195 4.64721 4.89954 4.95257 5.09514 5.13081 5.15933 5.20526 5.26765 5.29195 5.40815 5.46158 5.51739 5.70490 5.75463 5.87193 5.96344 6.04503 6.11101 6.12850 6.19889 6.31350 6.56053 6.59115 6.72004 6.79322 6.92332 7.02462 7.14170 7.38874 7.50051 7.63888 7.77743 8.02274 8.03856 8.30256 8.51503 8.96632 9.56368 11.02030 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.003426 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.801684 B = 8170.577310 C = 8793.483183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C 0.116 3.884 4 N -0.538 5.538 5 H 0.415 0.585 6 C 0.038 3.962 7 C 0.117 3.883 8 N -0.528 5.528 9 C 0.032 3.968 10 C 0.211 3.789 11 H 0.043 0.957 12 C -0.173 4.173 13 C -0.501 4.501 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.130 4.130 22 C -0.231 4.231 23 C 0.544 3.456 24 O -0.529 6.529 25 O -0.353 6.353 26 C 0.039 3.961 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.007 0.993 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -10.825 8.427 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.004 4.004 4 N -0.133 5.133 5 H 0.252 0.748 6 C -0.071 4.071 7 C -0.012 4.012 8 N -0.251 5.251 9 C -0.117 4.117 10 C 0.105 3.895 11 H 0.060 0.940 12 C -0.232 4.232 13 C -0.539 4.539 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.153 4.153 22 C -0.240 4.240 23 C 0.392 3.608 24 O -0.420 6.420 25 O -0.269 6.269 26 C -0.055 4.055 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.026 0.974 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.168 0.832 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.125 -10.975 8.764 18.555 hybrid contribution 0.597 -0.159 -1.240 1.386 sum -11.528 -11.134 7.524 17.705 Atomic orbital electron populations 1.21657 0.94054 1.01916 1.02156 1.20295 0.96625 0.89183 1.03982 1.20430 1.00066 0.94258 0.85636 1.41671 1.51127 1.11803 1.08678 0.74808 1.20417 1.05062 0.86270 0.95372 1.20632 0.90855 0.94870 0.94867 1.62403 1.10389 1.04414 1.47909 1.22284 1.02878 0.91842 0.94683 1.19348 0.94133 0.87490 0.88549 0.93951 1.22425 0.95877 1.02666 1.02276 1.21095 0.91419 1.06007 1.35386 0.91911 1.24916 0.98570 0.95139 0.95589 1.69877 1.35523 1.09525 1.38426 0.86521 0.85269 0.77377 0.78400 1.20877 1.21247 1.19800 1.21782 1.04121 0.97037 0.92407 1.19246 1.19030 0.97249 0.88479 1.20167 0.73384 0.81873 0.85389 1.90771 1.44498 1.22306 1.84447 1.86610 1.79530 1.44075 1.16733 1.23185 1.01366 1.01418 0.79569 0.91913 0.93116 0.92067 0.88141 0.91191 0.94802 0.88887 0.96700 0.90375 0.94348 0.97392 0.89196 0.95179 0.92961 0.83206 0.92160 0.88367 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.90 37.16 0.37 -1.00 16 2 C -0.06 -0.68 5.81 -27.88 -0.16 -0.84 16 3 C 0.12 1.53 6.47 -81.51 -0.53 1.01 16 4 N -0.54 -6.94 4.95 -5.20 -0.03 -6.97 16 5 H 0.41 4.41 8.73 -40.82 -0.36 4.05 16 6 C 0.04 0.57 5.85 -81.89 -0.48 0.09 16 7 C 0.12 1.97 4.93 -4.97 -0.02 1.95 16 8 N -0.53 -10.72 4.73 -237.73 -1.13 -11.85 16 9 C 0.03 0.59 8.58 60.07 0.52 1.10 16 10 C 0.21 5.05 2.34 -68.86 -0.16 4.89 16 11 H 0.04 1.12 8.03 -51.93 -0.42 0.70 16 12 C -0.17 -3.97 8.27 37.16 0.31 -3.66 16 13 C -0.50 -13.29 7.88 -34.44 -0.27 -13.56 16 14 H 0.06 1.68 6.77 -52.49 -0.36 1.33 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 16 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.13 -2.03 10.89 -37.49 -0.41 -2.44 16 22 C -0.23 -3.51 6.33 -103.01 -0.65 -4.16 16 23 C 0.54 8.23 7.95 34.33 0.27 8.51 16 24 O -0.53 -8.33 14.66 -19.30 -0.28 -8.61 16 25 O -0.35 -4.90 10.47 -40.74 -0.43 -5.32 16 26 C 0.04 0.38 10.57 101.05 1.07 1.45 16 27 H 0.06 0.71 8.02 -51.93 -0.42 0.30 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 1.20 6.79 -51.93 -0.35 0.85 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 33 H 0.09 1.57 8.00 -51.93 -0.42 1.15 16 34 H 0.01 0.26 6.51 -51.93 -0.34 -0.08 16 35 H 0.08 1.59 6.42 -51.93 -0.33 1.26 16 36 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 37 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 38 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 39 H 0.03 0.66 6.47 -51.93 -0.34 0.33 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -29.86 355.10 -7.92 -37.79 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.77 Total: 3.01 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.25 Total: -5.16 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.52 Total: -43.01 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.71 Total: -13.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.86 -7.92 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894000904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds