Wall clock time and date at job start Tue Mar 31 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.34625 * 125.90128 * 264.69747 * 3 2 1 5 5 H 0.97005 * 124.80416 * 359.97308 * 4 3 2 6 6 C 1.36427 * 110.37989 * 179.82528 * 4 3 2 7 7 C 1.50706 * 125.45326 * 180.15814 * 6 4 3 8 8 N 1.46896 * 109.47173 * 275.30071 * 7 6 4 9 9 C 1.46908 * 110.99619 * 66.04733 * 8 7 6 10 10 C 1.46899 * 111.00053 * 189.99881 * 8 7 6 11 11 H 1.08998 * 109.46645 * 55.00171 * 10 8 7 12 12 C 1.52998 * 109.47288 * 295.00246 * 10 8 7 13 13 C 1.50703 * 109.47062 * 175.00188 * 10 8 7 14 14 H 1.07992 * 119.99948 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99952 * 180.02562 * 13 10 8 16 16 N 1.31517 * 120.00040 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00070 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47427 * 90.00139 * 17 15 13 19 19 H 1.48503 * 109.47202 * 209.99918 * 17 15 13 20 20 H 1.48497 * 109.47197 * 329.99709 * 17 15 13 21 21 C 1.34432 * 109.08630 * 0.43856 * 6 4 3 22 22 C 1.37849 * 125.89110 * 85.00384 * 3 2 1 23 23 C 1.47107 * 127.02420 * 0.02562 * 22 3 2 24 24 O 1.21545 * 120.00363 * 359.97438 * 23 22 3 25 25 O 1.34792 * 119.99676 * 180.02562 * 23 22 3 26 26 C 1.45198 * 116.99650 * 179.97438 * 25 23 22 27 27 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 28 28 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 31 31 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 32 32 H 1.09006 * 109.46879 * 35.30449 * 7 6 4 33 33 H 1.09000 * 109.46646 * 155.30167 * 7 6 4 34 34 H 1.08997 * 109.46787 * 60.00373 * 9 8 7 35 35 H 1.09000 * 109.46654 * 180.02562 * 9 8 7 36 36 H 1.08992 * 109.47249 * 300.00013 * 9 8 7 37 37 H 1.09006 * 109.47167 * 59.99965 * 12 10 8 38 38 H 1.09001 * 109.47285 * 179.97438 * 12 10 8 39 39 H 1.08996 * 109.47488 * 300.00039 * 12 10 8 40 40 H 0.96999 * 120.00028 * 180.02562 * 16 15 13 41 41 H 1.08003 * 126.80841 * 179.74030 * 21 6 4 42 42 H 1.09005 * 109.46991 * 60.00627 * 26 25 23 43 43 H 1.09007 * 109.46670 * 180.02562 * 26 25 23 44 44 H 1.08995 * 109.47599 * 299.99746 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3906 2.1315 -1.0858 5 1 2.3638 1.8009 -1.9974 6 6 2.7933 3.3833 -0.7227 7 6 3.2619 4.4594 -1.6680 8 7 4.6923 4.2764 -1.9478 9 6 4.9282 3.0314 -2.6911 10 6 5.2395 5.4325 -2.6703 11 1 5.0348 6.3430 -2.1071 12 6 4.5851 5.5282 -4.0499 13 6 6.7286 5.2654 -2.8312 14 1 7.2194 4.3884 -2.4359 15 6 7.4645 6.2327 -3.4822 16 7 6.8669 7.3010 -3.9631 17 14 9.3101 6.0253 -3.6823 18 1 9.5930 5.3087 -4.9517 19 1 9.9579 7.3612 -3.7131 20 1 9.8467 5.2413 -2.5410 21 6 2.7109 3.5011 0.6139 22 6 2.2101 2.2151 1.1125 23 6 1.9511 1.8483 2.5134 24 8 1.5339 0.7393 2.7841 25 8 2.1754 2.7425 3.4967 26 6 1.8972 2.3120 4.8552 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.6984 4.3959 -2.5989 33 1 3.1029 5.4371 -1.2130 34 1 4.3885 3.0654 -3.6374 35 1 5.9951 2.9204 -2.8846 36 1 4.5761 2.1845 -2.1022 37 1 3.5080 5.6491 -3.9336 38 1 4.9908 6.3863 -4.5859 39 1 4.7897 4.6177 -4.6132 40 1 7.3845 7.9814 -4.4214 41 1 2.9634 4.3700 1.2037 42 1 2.5176 1.4490 5.0970 43 1 2.1195 3.1249 5.5466 44 1 0.8455 2.0393 4.9418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894000904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:39 Heat of formation + Delta-G solvation = -60.734401 kcal Electronic energy + Delta-G solvation = -23962.376191 eV Core-core repulsion = 20493.849199 eV Total energy + Delta-G solvation = -3468.526991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44580 -40.83884 -38.83122 -37.29221 -35.06866 -34.33513 -32.31347 -31.41562 -29.86601 -28.55499 -27.64310 -27.09566 -25.26005 -24.84631 -22.94559 -21.56850 -20.94368 -20.62419 -18.48920 -18.18770 -17.44161 -17.25293 -17.00013 -16.87326 -16.30609 -15.51079 -15.38703 -15.29852 -14.99603 -14.54126 -14.42247 -14.30670 -14.03930 -13.78039 -13.56302 -13.29858 -13.09899 -12.91250 -12.82882 -12.72663 -12.60766 -12.48791 -12.37980 -12.22016 -12.01039 -11.91363 -11.73414 -11.65995 -11.38471 -10.90735 -10.47779 -9.87508 -9.14438 -8.80984 -8.09263 -6.19536 0.47588 1.34237 1.42695 1.45166 1.54880 1.81476 2.27904 2.33015 2.44958 3.20347 3.52197 3.69608 3.84207 4.05820 4.20394 4.27635 4.37160 4.39013 4.40004 4.48734 4.50751 4.65189 4.67869 4.70470 4.74196 4.84568 4.87950 4.91394 4.95054 5.06563 5.13895 5.16631 5.25987 5.33357 5.51607 5.56338 5.72235 5.75275 5.80861 5.97786 6.20661 6.46156 6.49930 6.72666 6.92555 6.93609 7.49610 8.96404 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.003426 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.801684 B = 8170.577310 C = 8793.483183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.133 3.867 4 N -0.527 5.527 5 H 0.428 0.572 6 C 0.030 3.970 7 C 0.123 3.877 8 N -0.541 5.541 9 C 0.038 3.962 10 C 0.216 3.784 11 H 0.011 0.989 12 C -0.159 4.159 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.140 4.140 22 C -0.259 4.259 23 C 0.541 3.459 24 O -0.541 6.541 25 O -0.367 6.367 26 C 0.032 3.968 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.146 0.854 42 H 0.061 0.939 43 H 0.127 0.873 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 -12.446 8.241 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C 0.012 3.988 4 N -0.123 5.123 5 H 0.268 0.732 6 C -0.079 4.079 7 C -0.005 4.005 8 N -0.265 5.265 9 C -0.110 4.110 10 C 0.109 3.891 11 H 0.029 0.971 12 C -0.218 4.218 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.164 4.164 22 C -0.267 4.267 23 C 0.389 3.611 24 O -0.434 6.434 25 O -0.283 6.283 26 C -0.062 4.062 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.080 0.920 43 H 0.145 0.855 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.678 -12.604 8.575 19.827 hybrid contribution 0.706 0.319 -1.090 1.337 sum -11.971 -12.286 7.485 18.716 Atomic orbital electron populations 1.21623 0.93101 1.03019 1.01584 1.20398 0.97304 0.87447 1.04798 1.20839 0.97995 0.94962 0.85006 1.41585 1.50435 1.10890 1.09388 0.73228 1.20047 1.06112 0.86932 0.94780 1.20530 0.88892 0.95442 0.95666 1.62252 1.12747 1.03794 1.47683 1.22220 1.01658 0.91692 0.95432 1.19076 0.93360 0.87763 0.88929 0.97103 1.22210 0.97020 1.01419 1.01178 1.21370 0.93052 1.05683 1.35148 0.92710 1.25620 1.02421 0.94960 0.95482 1.69998 1.36815 1.10090 1.39003 0.85604 0.80658 0.77244 0.78394 1.20185 1.21075 1.19692 1.21881 1.04248 0.97419 0.92810 1.19460 1.20471 0.97538 0.89279 1.20230 0.73220 0.81866 0.85747 1.90750 1.45255 1.22690 1.84713 1.86591 1.79388 1.44194 1.18131 1.23498 1.01814 1.02768 0.78078 0.93971 0.92161 0.90178 0.89259 0.88380 0.93608 0.89452 0.95711 0.92636 0.91938 0.95112 0.92079 0.94832 0.93004 0.83613 0.92022 0.85526 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.90 71.98 0.71 -1.60 16 2 C -0.06 -1.17 5.81 29.85 0.17 -0.99 16 3 C 0.13 3.27 6.47 42.04 0.27 3.54 16 4 N -0.53 -12.36 4.95 -170.37 -0.84 -13.20 16 5 H 0.43 7.70 8.73 -92.70 -0.81 6.89 16 6 C 0.03 0.88 5.85 40.98 0.24 1.12 16 7 C 0.12 4.04 4.93 85.56 0.42 4.46 16 8 N -0.54 -21.70 4.73 -906.03 -4.29 -25.98 16 9 C 0.04 1.36 8.58 127.69 1.10 2.46 16 10 C 0.22 10.42 2.34 44.17 0.10 10.52 16 11 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 12 C -0.16 -7.22 8.27 71.98 0.60 -6.62 16 13 C -0.51 -27.52 7.88 25.60 0.20 -27.32 16 14 H 0.05 2.96 6.77 -2.91 -0.02 2.94 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.92 -51.64 11.32 21.45 0.24 -51.39 16 17 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 C -0.14 -4.31 10.89 23.62 0.26 -4.05 16 22 C -0.26 -7.65 6.33 -18.82 -0.12 -7.77 16 23 C 0.54 16.16 7.95 70.15 0.56 16.72 16 24 O -0.54 -16.76 14.66 19.69 0.29 -16.47 16 25 O -0.37 -10.03 10.47 -57.04 -0.60 -10.63 16 26 C 0.03 0.59 10.57 113.37 1.20 1.78 16 27 H 0.04 0.89 8.02 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.97 6.79 -2.39 -0.02 1.95 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.40 6.94 -2.38 -0.02 1.38 16 33 H 0.09 2.94 8.00 -2.39 -0.02 2.92 16 34 H 0.02 0.82 6.51 -2.39 -0.02 0.81 16 35 H 0.05 2.22 6.42 -2.39 -0.02 2.20 16 36 H 0.06 1.89 6.33 -2.39 -0.02 1.87 16 37 H 0.03 1.21 6.75 -2.38 -0.02 1.19 16 38 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 39 H 0.03 1.45 6.47 -2.39 -0.02 1.44 16 40 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -64.23 355.10 3.19 -61.04 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.20 Total: 18.03 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.16 Total: -6.56 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -4.89 Total: -90.58 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.31 Total: -27.10 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.23 3.19 -61.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894000904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.305 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds