Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47314 * 2 1 4 4 N 1.34623 * 125.89838 * 265.31085 * 3 2 1 5 5 H 0.97008 * 124.80868 * 359.97438 * 4 3 2 6 6 C 1.36421 * 110.38270 * 180.14349 * 4 3 2 7 7 C 1.50707 * 125.46065 * 179.85477 * 6 4 3 8 8 N 1.46902 * 109.46656 * 274.71552 * 7 6 4 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47077 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47047 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00112 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47104 * 60.00043 * 16 14 12 18 18 H 1.48496 * 109.47638 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47155 * 300.00196 * 16 14 12 20 20 C 1.34439 * 109.08602 * 359.58622 * 6 4 3 21 21 C 1.37847 * 125.89568 * 85.00263 * 3 2 1 22 22 C 1.47115 * 127.02448 * 359.97438 * 21 3 2 23 23 O 1.21547 * 119.99491 * 0.02562 * 22 21 3 24 24 O 1.34779 * 119.99817 * 180.02562 * 22 21 3 25 25 C 1.45201 * 116.99873 * 180.02562 * 24 22 21 26 26 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47130 * 299.99932 * 1 2 3 28 28 H 1.08997 * 109.46864 * 59.99544 * 1 2 3 29 29 H 1.08997 * 109.47003 * 239.99554 * 2 1 3 30 30 H 1.09003 * 109.47140 * 120.00146 * 2 1 3 31 31 H 1.08990 * 109.47142 * 154.71537 * 7 6 4 32 32 H 1.09004 * 109.46726 * 34.71435 * 7 6 4 33 33 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 34 34 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 35 35 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 36 36 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 37 37 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 38 38 H 1.08993 * 109.47277 * 299.99937 * 11 10 9 39 39 H 1.09000 * 109.47041 * 60.00238 * 11 10 9 40 40 H 0.96998 * 120.00461 * 180.02562 * 15 14 12 41 41 H 1.08003 * 126.81031 * 180.21253 * 20 6 4 42 42 H 1.08997 * 109.46975 * 300.00554 * 25 24 22 43 43 H 1.09001 * 109.46994 * 59.99989 * 25 24 22 44 44 H 1.08996 * 109.47472 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3796 2.1353 -1.0869 5 1 2.3436 1.8080 -1.9994 6 6 2.7927 3.3834 -0.7229 7 6 3.2600 4.4601 -1.6683 8 7 4.6903 4.2777 -1.9494 9 6 5.1817 5.3114 -2.8704 10 6 6.6715 5.0893 -3.1382 11 6 7.1832 6.1654 -4.0978 12 6 8.6505 5.9463 -4.3621 13 1 9.1665 5.1217 -3.8929 14 6 9.3344 6.7985 -5.2029 15 7 8.7063 7.8030 -5.7739 16 14 11.1534 6.5274 -5.5299 17 1 11.3527 5.1872 -6.1380 18 1 11.6504 7.5725 -6.4605 19 1 11.9036 6.6070 -4.2508 20 6 2.7106 3.5013 0.6138 21 6 2.2101 2.2152 1.1124 22 6 1.9501 1.8488 2.5133 23 8 1.5328 0.7398 2.7839 24 8 2.1746 2.7430 3.4965 25 6 1.8965 2.3126 4.8551 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1009 5.4375 -1.2130 32 1 2.6957 4.3964 -2.5988 33 1 5.2282 4.2681 -1.0959 34 1 4.6308 5.2532 -3.8091 35 1 5.0358 6.2950 -2.4238 36 1 7.2221 5.1476 -2.1993 37 1 6.8178 4.1056 -3.5846 38 1 6.6326 6.1066 -5.0366 39 1 7.0369 7.1492 -3.6519 40 1 9.1873 8.4024 -6.3658 41 1 2.9634 4.3700 1.2036 42 1 0.8447 2.0398 4.9416 43 1 2.5167 1.4494 5.0969 44 1 2.1197 3.1250 5.5465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894237718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -69.743238 kcal Electronic energy + Delta-G solvation = -22552.812715 eV Core-core repulsion = 19083.895071 eV Total energy + Delta-G solvation = -3468.917644 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.60279 -39.96849 -36.66844 -36.32427 -34.13479 -33.33917 -31.48294 -31.47282 -29.17432 -27.89011 -26.48068 -24.62792 -24.06490 -22.37130 -22.03914 -20.63985 -20.10639 -19.78088 -17.69469 -16.77763 -16.41381 -16.25195 -16.13184 -15.47270 -15.12492 -14.61879 -14.53329 -14.19226 -13.93709 -13.80540 -13.59846 -13.32011 -13.22548 -12.92802 -12.46580 -12.37026 -12.20012 -11.79252 -11.71562 -11.61185 -11.43278 -11.21618 -10.89364 -10.83436 -10.60337 -10.56465 -10.49861 -9.72105 -9.38342 -9.10137 -9.07722 -8.43186 -8.34595 -8.18711 -6.00007 -4.02201 1.31309 2.13612 2.55370 3.08300 3.14704 3.33664 3.37787 3.40601 4.34903 4.42632 4.48650 4.68607 4.74231 4.91636 4.94445 4.98654 5.01310 5.06698 5.23732 5.31503 5.35739 5.36579 5.48201 5.53693 5.60866 5.73184 5.74091 5.83830 5.92516 5.97314 6.27019 6.32146 6.53912 6.66784 6.70325 6.76842 7.10837 7.17056 7.25388 7.52628 7.67234 7.78685 7.81857 8.00058 8.43251 9.04743 9.61810 11.11378 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002229 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.814092 B =12561.292564 C =13047.937315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C 0.125 3.875 4 N -0.528 5.528 5 H 0.420 0.580 6 C 0.025 3.975 7 C 0.121 3.879 8 N -0.691 5.691 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.139 4.139 21 C -0.231 4.231 22 C 0.542 3.458 23 O -0.524 6.524 24 O -0.355 6.355 25 C 0.038 3.962 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.343 0.657 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.554 -12.396 15.527 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C 0.004 3.996 4 N -0.123 5.123 5 H 0.258 0.742 6 C -0.084 4.084 7 C -0.008 4.008 8 N -0.322 5.322 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.163 4.163 21 C -0.239 4.239 22 C 0.390 3.610 23 O -0.415 6.415 24 O -0.271 6.271 25 C -0.056 4.056 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.167 0.833 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.744 -12.998 14.868 27.228 hybrid contribution 1.046 0.562 0.107 1.192 sum -17.699 -12.436 14.975 26.309 Atomic orbital electron populations 1.21665 0.93851 1.02185 1.02174 1.20342 0.96772 0.88918 1.04302 1.20536 0.99264 0.94300 0.85452 1.41502 1.50353 1.11487 1.08926 0.74198 1.20187 1.06590 0.87006 0.94646 1.20427 0.90678 0.93169 0.96564 1.60632 1.01532 1.51122 1.18954 1.22160 0.98172 0.91217 0.95425 1.21622 0.91321 1.01243 1.00294 1.19059 0.95688 0.93035 0.93744 1.21216 0.94865 1.12412 1.27322 0.92730 1.25029 0.98330 0.95220 0.95945 1.69951 1.36328 1.16228 1.31112 0.86650 0.85388 0.77802 0.78113 1.20233 1.21311 1.20244 1.21852 1.04708 0.97295 0.92466 1.19235 1.19054 0.96897 0.88733 1.20128 0.73586 0.81967 0.85344 1.90793 1.44116 1.22212 1.84381 1.86584 1.79540 1.44121 1.16885 1.23211 1.01538 1.01528 0.79287 0.91840 0.91930 0.93021 0.90850 0.87978 0.92639 0.90274 0.83864 0.91423 0.95402 0.93536 0.92626 0.96612 0.96751 0.92967 0.83270 0.92107 0.92040 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.07 -0.56 5.81 -27.88 -0.16 -0.72 16 3 C 0.12 1.30 6.47 -81.51 -0.53 0.78 16 4 N -0.53 -5.03 5.89 -5.20 -0.03 -5.06 16 5 H 0.42 3.09 8.96 -40.82 -0.37 2.72 16 6 C 0.03 0.27 6.63 -81.89 -0.54 -0.27 16 7 C 0.12 1.33 6.21 -4.97 -0.03 1.30 16 8 N -0.69 -9.35 6.49 -115.05 -0.75 -10.10 16 9 C 0.06 0.95 5.69 -3.82 -0.02 0.93 16 10 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 16 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.14 -1.59 10.89 -37.49 -0.41 -2.00 16 21 C -0.23 -2.79 6.33 -103.01 -0.65 -3.44 16 22 C 0.54 6.85 7.95 34.33 0.27 7.12 16 23 O -0.52 -7.14 14.66 -19.30 -0.28 -7.42 16 24 O -0.35 -4.04 10.47 -40.71 -0.43 -4.47 16 25 C 0.04 0.30 10.57 101.05 1.07 1.37 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 1.01 6.79 -51.93 -0.35 0.65 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.34 4.60 8.72 -39.29 -0.34 4.26 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.15 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.49 373.62 -8.83 -41.32 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.36 Total: 0.78 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.33 Total: -11.14 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.04 Total: -41.41 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.71 Total: -11.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.49 -8.83 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894237718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.424 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds