Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47314 * 2 1 4 4 N 1.34623 * 125.89838 * 265.31085 * 3 2 1 5 5 H 0.97008 * 124.80868 * 359.97438 * 4 3 2 6 6 C 1.36421 * 110.38270 * 180.14349 * 4 3 2 7 7 C 1.50707 * 125.46065 * 179.85477 * 6 4 3 8 8 N 1.46902 * 109.46656 * 274.71552 * 7 6 4 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47077 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47047 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00112 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47104 * 60.00043 * 16 14 12 18 18 H 1.48496 * 109.47638 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47155 * 300.00196 * 16 14 12 20 20 C 1.34439 * 109.08602 * 359.58622 * 6 4 3 21 21 C 1.37847 * 125.89568 * 85.00263 * 3 2 1 22 22 C 1.47115 * 127.02448 * 359.97438 * 21 3 2 23 23 O 1.21547 * 119.99491 * 0.02562 * 22 21 3 24 24 O 1.34779 * 119.99817 * 180.02562 * 22 21 3 25 25 C 1.45201 * 116.99873 * 180.02562 * 24 22 21 26 26 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47130 * 299.99932 * 1 2 3 28 28 H 1.08997 * 109.46864 * 59.99544 * 1 2 3 29 29 H 1.08997 * 109.47003 * 239.99554 * 2 1 3 30 30 H 1.09003 * 109.47140 * 120.00146 * 2 1 3 31 31 H 1.08990 * 109.47142 * 154.71537 * 7 6 4 32 32 H 1.09004 * 109.46726 * 34.71435 * 7 6 4 33 33 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 34 34 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 35 35 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 36 36 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 37 37 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 38 38 H 1.08993 * 109.47277 * 299.99937 * 11 10 9 39 39 H 1.09000 * 109.47041 * 60.00238 * 11 10 9 40 40 H 0.96998 * 120.00461 * 180.02562 * 15 14 12 41 41 H 1.08003 * 126.81031 * 180.21253 * 20 6 4 42 42 H 1.08997 * 109.46975 * 300.00554 * 25 24 22 43 43 H 1.09001 * 109.46994 * 59.99989 * 25 24 22 44 44 H 1.08996 * 109.47472 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3796 2.1353 -1.0869 5 1 2.3436 1.8080 -1.9994 6 6 2.7927 3.3834 -0.7229 7 6 3.2600 4.4601 -1.6683 8 7 4.6903 4.2777 -1.9494 9 6 5.1817 5.3114 -2.8704 10 6 6.6715 5.0893 -3.1382 11 6 7.1832 6.1654 -4.0978 12 6 8.6505 5.9463 -4.3621 13 1 9.1665 5.1217 -3.8929 14 6 9.3344 6.7985 -5.2029 15 7 8.7063 7.8030 -5.7739 16 14 11.1534 6.5274 -5.5299 17 1 11.3527 5.1872 -6.1380 18 1 11.6504 7.5725 -6.4605 19 1 11.9036 6.6070 -4.2508 20 6 2.7106 3.5013 0.6138 21 6 2.2101 2.2152 1.1124 22 6 1.9501 1.8488 2.5133 23 8 1.5328 0.7398 2.7839 24 8 2.1746 2.7430 3.4965 25 6 1.8965 2.3126 4.8551 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1009 5.4375 -1.2130 32 1 2.6957 4.3964 -2.5988 33 1 5.2282 4.2681 -1.0959 34 1 4.6308 5.2532 -3.8091 35 1 5.0358 6.2950 -2.4238 36 1 7.2221 5.1476 -2.1993 37 1 6.8178 4.1056 -3.5846 38 1 6.6326 6.1066 -5.0366 39 1 7.0369 7.1492 -3.6519 40 1 9.1873 8.4024 -6.3658 41 1 2.9634 4.3700 1.2036 42 1 0.8447 2.0398 4.9416 43 1 2.5167 1.4494 5.0969 44 1 2.1197 3.1250 5.5465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894237718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -89.990974 kcal Electronic energy + Delta-G solvation = -22553.690723 eV Core-core repulsion = 19083.895071 eV Total energy + Delta-G solvation = -3469.795652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.42647 -40.84397 -37.82397 -37.30119 -35.60379 -34.58138 -33.13719 -32.31237 -30.33542 -28.65331 -27.94401 -25.87920 -24.89281 -23.88707 -22.90241 -21.97720 -21.30050 -20.63530 -18.63164 -18.42341 -17.61674 -17.24696 -16.93458 -16.62467 -16.56615 -15.98960 -15.48193 -15.31040 -14.99403 -14.73869 -14.44655 -14.42933 -14.22860 -14.05257 -13.75896 -13.49477 -13.15726 -13.12423 -13.00336 -12.68250 -12.61315 -12.43492 -12.35413 -12.24796 -11.92378 -11.69467 -11.51782 -11.43241 -11.36634 -11.11746 -10.53804 -9.93223 -9.46189 -9.11244 -8.19364 -6.30060 0.44582 1.27031 1.40654 1.43414 1.51377 1.78656 2.24282 2.31275 2.41709 3.13723 3.33418 3.67589 3.83016 4.02816 4.14150 4.21842 4.29909 4.35189 4.36494 4.37490 4.41100 4.52880 4.62519 4.65962 4.72211 4.76184 4.80064 4.91501 5.00950 5.04480 5.12472 5.19863 5.26429 5.29927 5.47898 5.53131 5.68925 5.77344 5.87648 5.92842 6.00605 6.28137 6.42532 6.48952 6.86962 6.89544 7.39026 8.92149 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.002229 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.814092 B =12561.292564 C =13047.937315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C 0.132 3.868 4 N -0.520 5.520 5 H 0.432 0.568 6 C 0.023 3.977 7 C 0.126 3.874 8 N -0.690 5.690 9 C 0.073 3.927 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.544 4.544 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.147 4.147 21 C -0.260 4.260 22 C 0.538 3.462 23 O -0.543 6.543 24 O -0.365 6.365 25 C 0.031 3.969 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.345 0.655 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.051 0.949 38 H -0.007 1.007 39 H -0.008 1.008 40 H 0.264 0.736 41 H 0.154 0.846 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.432 -13.288 15.631 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C 0.010 3.990 4 N -0.115 5.115 5 H 0.272 0.728 6 C -0.086 4.086 7 C -0.003 4.003 8 N -0.322 5.322 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.170 4.170 21 C -0.269 4.269 22 C 0.386 3.614 23 O -0.435 6.435 24 O -0.282 6.282 25 C -0.062 4.062 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.172 0.828 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.631 -13.895 14.978 27.650 hybrid contribution 0.960 0.838 0.123 1.281 sum -17.671 -13.057 15.102 26.661 Atomic orbital electron populations 1.21626 0.93201 1.02982 1.01591 1.20392 0.97231 0.87822 1.04749 1.20824 0.98051 0.94854 0.85224 1.41497 1.49601 1.10989 1.09387 0.72829 1.20093 1.06808 0.87403 0.94308 1.20430 0.88932 0.93692 0.97258 1.60542 1.03028 1.49830 1.18792 1.21843 0.95410 0.92070 0.96290 1.21369 0.94103 0.98847 0.98779 1.18969 0.94724 0.93742 0.93839 1.21683 0.96395 1.12601 1.27525 0.92388 1.25973 1.03424 0.94846 0.95642 1.70079 1.38354 1.17140 1.31746 0.85524 0.79294 0.78064 0.78312 1.19224 1.20804 1.19233 1.21998 1.04741 0.97389 0.92917 1.19466 1.20559 0.97764 0.89072 1.20311 0.73284 0.81877 0.85887 1.90770 1.45162 1.22868 1.84739 1.86568 1.79386 1.44151 1.18065 1.23494 1.01767 1.02807 0.78103 0.90395 0.94001 0.92029 0.88448 0.89409 0.91734 0.89174 0.83653 0.91385 0.95301 0.93314 0.93030 0.98857 0.98958 0.92770 0.82813 0.91884 0.92079 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 71.98 0.71 -1.23 16 2 C -0.06 -1.01 5.81 29.85 0.17 -0.83 16 3 C 0.13 2.60 6.47 42.04 0.27 2.87 16 4 N -0.52 -8.92 5.89 -170.37 -1.00 -9.93 16 5 H 0.43 5.30 8.96 -92.70 -0.83 4.47 16 6 C 0.02 0.47 6.63 40.98 0.27 0.74 16 7 C 0.13 2.50 6.21 85.56 0.53 3.03 16 8 N -0.69 -17.46 6.49 -517.91 -3.36 -20.82 16 9 C 0.07 2.28 5.69 86.30 0.49 2.78 16 10 C -0.09 -3.73 5.41 30.59 0.17 -3.56 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 15 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 16 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C -0.15 -3.22 10.89 23.62 0.26 -2.96 16 21 C -0.26 -6.18 6.33 -18.82 -0.12 -6.30 16 22 C 0.54 13.63 7.95 70.15 0.56 14.19 16 23 O -0.54 -14.96 14.66 19.68 0.29 -14.67 16 24 O -0.37 -8.25 10.47 -56.91 -0.60 -8.85 16 25 C 0.03 0.47 10.57 113.37 1.20 1.67 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.04 0.77 8.01 -2.39 -0.02 0.75 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.68 6.79 -2.39 -0.02 1.67 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.35 8.65 8.72 -89.70 -0.78 7.87 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.84 373.62 2.38 -67.46 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.62 Total: 15.52 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.35 Total: -18.61 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -4.08 Total: -87.18 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.31 Total: -23.52 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.84 2.38 -67.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894237718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.531 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds