Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.34181 * 126.11551 * 125.00196 * 5 4 2 7 7 O 1.35013 * 107.25839 * 180.02562 * 6 5 4 8 8 C 1.34195 * 107.74140 * 359.97438 * 7 6 5 9 9 N 1.38650 * 125.70219 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99918 * 0.03351 * 9 8 7 11 11 O 1.21277 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00088 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47260 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47641 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47598 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00587 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99445 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00439 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47175 * 59.99985 * 20 18 16 22 22 H 1.48502 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47299 * 299.99673 * 20 18 16 24 24 N 1.30956 * 108.60096 * 359.72967 * 8 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 1.08004 * 126.36490 * 0.02562 * 6 5 4 35 35 H 0.96993 * 120.00329 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.47293 * 299.99318 * 12 10 9 37 37 H 1.08992 * 109.46963 * 59.99970 * 12 10 9 38 38 H 1.08996 * 109.47317 * 300.00283 * 13 12 10 39 39 H 1.09003 * 109.47019 * 59.99873 * 13 12 10 40 40 H 1.09005 * 109.47120 * 300.00467 * 14 13 12 41 41 H 1.09003 * 109.47048 * 60.00087 * 14 13 12 42 42 H 1.09005 * 109.46486 * 299.99906 * 15 14 13 43 43 H 1.08995 * 109.46847 * 59.99773 * 15 14 13 44 44 H 0.97005 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.8295 -1.1889 6 6 4.2578 -1.9603 -1.2846 7 8 5.5602 -1.6197 -1.1816 8 6 5.6236 -0.2884 -1.0253 9 7 6.7852 0.4551 -0.8823 10 6 7.9845 -0.1597 -0.8945 11 8 8.0477 -1.3632 -1.0300 12 6 9.2471 0.6484 -0.7397 13 6 10.4588 -0.2845 -0.7872 14 6 11.7406 0.5359 -0.6307 15 6 12.9524 -0.3969 -0.6789 16 6 14.2149 0.4111 -0.5241 17 1 14.1588 1.4830 -0.4039 18 6 15.4419 -0.2176 -0.5371 19 7 15.5104 -1.5227 -0.6841 20 14 17.0069 0.7842 -0.3460 21 1 16.9826 1.4965 0.9569 22 1 18.1830 -0.1213 -0.3926 23 1 17.0993 1.7735 -1.4495 24 7 4.4054 0.1919 -1.0355 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.8651 -2.9574 -1.4189 35 1 6.7347 1.4176 -0.7737 36 1 9.3153 1.3746 -1.5497 37 1 9.2288 1.1712 0.2165 38 1 10.3904 -1.0105 0.0229 39 1 10.4772 -0.8077 -1.7433 40 1 11.8088 1.2617 -1.4412 41 1 11.7225 1.0595 0.3252 42 1 12.8845 -1.1228 0.1314 43 1 12.9704 -0.9200 -1.6349 44 1 16.3736 -1.9651 -0.6936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894439705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -43.121441 kcal Electronic energy + Delta-G solvation = -22472.506908 eV Core-core repulsion = 19004.743672 eV Total energy + Delta-G solvation = -3467.763236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.52343 -40.09905 -37.15978 -35.57686 -35.00355 -34.25520 -32.69869 -30.68741 -29.69093 -27.37730 -26.95363 -25.86758 -23.50868 -22.31879 -21.79737 -20.67702 -20.07787 -19.87213 -18.35896 -17.15325 -17.05607 -16.51815 -16.15809 -15.79460 -15.45786 -14.56060 -14.50903 -14.28815 -14.19698 -14.08669 -13.82409 -12.72512 -12.65159 -12.51729 -12.46654 -12.23668 -11.81297 -11.71737 -11.68800 -11.60819 -11.18674 -11.05113 -11.01741 -10.62252 -10.59455 -10.53934 -10.48494 -10.40927 -10.27437 -9.66753 -9.29764 -9.04204 -8.46095 -8.32355 -5.97191 -4.00051 1.21611 1.77938 2.09729 2.73320 2.95938 3.34153 3.38785 3.40772 4.13978 4.41487 4.47119 4.55438 4.60221 4.78968 4.91630 5.06830 5.12309 5.17688 5.27341 5.30376 5.38154 5.39243 5.49658 5.62169 5.64434 5.68202 5.72564 5.74200 5.92990 6.02078 6.05301 6.09625 6.16866 6.41643 6.44312 6.61458 6.74543 6.92835 7.14519 7.62097 7.70636 7.74382 7.85804 8.03354 8.44794 9.07314 9.63762 11.14011 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.052825 B = 0.001970 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.924879 B =14208.404314 C =14601.930437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.032 4.032 5 C 0.009 3.991 6 C -0.092 4.092 7 O -0.182 6.182 8 C 0.427 3.573 9 N -0.621 5.621 10 C 0.510 3.490 11 O -0.488 6.488 12 C -0.131 4.131 13 C -0.106 4.106 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.501 5.501 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.215 0.785 35 H 0.437 0.563 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.045 4.309 -0.150 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.213 4.213 4 C -0.070 4.070 5 C -0.111 4.111 6 C -0.163 4.163 7 O -0.067 6.067 8 C 0.131 3.869 9 N -0.281 5.281 10 C 0.298 3.702 11 O -0.357 6.357 12 C -0.171 4.171 13 C -0.144 4.144 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.240 5.240 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.278 0.722 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.858 3.840 -0.205 30.104 hybrid contribution 0.991 0.193 0.064 1.012 sum -28.866 4.033 -0.141 29.147 Atomic orbital electron populations 1.21858 0.95133 1.01583 1.01923 1.21018 0.95190 0.97313 0.97303 1.22026 1.04016 0.94615 1.00609 1.20056 0.86005 1.01576 0.99350 1.21495 0.97187 0.88155 1.04217 1.24665 0.79005 1.01382 1.11251 1.84689 1.28965 1.23183 1.69826 1.21684 0.88123 0.78923 0.98212 1.42970 1.01014 1.11313 1.72829 1.21763 0.84206 0.89330 0.74904 1.90828 1.85978 1.14612 1.44311 1.21847 0.90566 0.99747 1.04913 1.21528 0.92128 0.97494 1.03274 1.21653 0.94152 0.98748 1.00227 1.19094 0.90833 0.94458 0.97368 1.21232 0.91278 0.93742 1.49810 0.92760 1.25041 0.99202 0.94893 0.95409 1.69966 1.24988 1.08159 1.50288 0.86661 0.82764 0.79937 0.78626 1.20282 1.21316 1.20279 1.70594 0.96614 1.31402 1.25382 0.92617 0.92595 0.92786 0.91425 0.93206 0.93699 0.89548 0.90176 0.90120 0.76828 0.72166 0.88006 0.88013 0.91497 0.91502 0.93254 0.93251 0.96549 0.96544 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 2 C -0.09 -0.64 2.91 -90.63 -0.26 -0.90 16 3 C -0.16 -1.26 8.93 37.15 0.33 -0.93 16 4 C -0.03 -0.23 5.25 -27.89 -0.15 -0.37 16 5 C 0.01 0.09 6.29 -82.80 -0.52 -0.43 16 6 C -0.09 -0.94 12.05 29.30 0.35 -0.58 16 7 O -0.18 -2.56 9.09 -17.84 -0.16 -2.72 16 8 C 0.43 5.42 8.88 -86.60 -0.77 4.65 16 9 N -0.62 -6.58 5.39 -13.06 -0.07 -6.65 16 10 C 0.51 6.68 7.79 -10.98 -0.09 6.60 16 11 O -0.49 -8.61 14.74 -16.29 -0.24 -8.85 16 12 C -0.13 -1.51 5.70 -27.88 -0.16 -1.67 16 13 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 14 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 15 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 16 C -0.52 -14.83 9.11 -34.45 -0.31 -15.14 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 N -0.50 -5.79 8.72 -10.57 -0.09 -5.88 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.85 5.49 -51.93 -0.29 0.57 16 32 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.22 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.44 2.99 8.82 -40.82 -0.36 2.63 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -34.81 366.85 -8.41 -43.23 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.37 Total: -3.28 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.73 Total: -11.55 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.57 Total: -39.05 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.40 Total: -11.57 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.81 -8.41 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894439705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.106 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds