Wall clock time and date at job start Tue Mar 31 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.34181 * 126.11551 * 125.00196 * 5 4 2 7 7 O 1.35013 * 107.25839 * 180.02562 * 6 5 4 8 8 C 1.34195 * 107.74140 * 359.97438 * 7 6 5 9 9 N 1.38650 * 125.70219 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99918 * 0.03351 * 9 8 7 11 11 O 1.21277 * 119.99897 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00088 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47260 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47641 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47598 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00587 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99445 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00439 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47175 * 59.99985 * 20 18 16 22 22 H 1.48502 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47299 * 299.99673 * 20 18 16 24 24 N 1.30956 * 108.60096 * 359.72967 * 8 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 1.08004 * 126.36490 * 0.02562 * 6 5 4 35 35 H 0.96993 * 120.00329 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.47293 * 299.99318 * 12 10 9 37 37 H 1.08992 * 109.46963 * 59.99970 * 12 10 9 38 38 H 1.08996 * 109.47317 * 300.00283 * 13 12 10 39 39 H 1.09003 * 109.47019 * 59.99873 * 13 12 10 40 40 H 1.09005 * 109.47120 * 300.00467 * 14 13 12 41 41 H 1.09003 * 109.47048 * 60.00087 * 14 13 12 42 42 H 1.09005 * 109.46486 * 299.99906 * 15 14 13 43 43 H 1.08995 * 109.46847 * 59.99773 * 15 14 13 44 44 H 0.97005 * 119.99944 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.8295 -1.1889 6 6 4.2578 -1.9603 -1.2846 7 8 5.5602 -1.6197 -1.1816 8 6 5.6236 -0.2884 -1.0253 9 7 6.7852 0.4551 -0.8823 10 6 7.9845 -0.1597 -0.8945 11 8 8.0477 -1.3632 -1.0300 12 6 9.2471 0.6484 -0.7397 13 6 10.4588 -0.2845 -0.7872 14 6 11.7406 0.5359 -0.6307 15 6 12.9524 -0.3969 -0.6789 16 6 14.2149 0.4111 -0.5241 17 1 14.1588 1.4830 -0.4039 18 6 15.4419 -0.2176 -0.5371 19 7 15.5104 -1.5227 -0.6841 20 14 17.0069 0.7842 -0.3460 21 1 16.9826 1.4965 0.9569 22 1 18.1830 -0.1213 -0.3926 23 1 17.0993 1.7735 -1.4495 24 7 4.4054 0.1919 -1.0355 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.8651 -2.9574 -1.4189 35 1 6.7347 1.4176 -0.7737 36 1 9.3153 1.3746 -1.5497 37 1 9.2288 1.1712 0.2165 38 1 10.3904 -1.0105 0.0229 39 1 10.4772 -0.8077 -1.7433 40 1 11.8088 1.2617 -1.4412 41 1 11.7225 1.0595 0.3252 42 1 12.8845 -1.1228 0.1314 43 1 12.9704 -0.9200 -1.6349 44 1 16.3736 -1.9651 -0.6936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894439705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:16 Heat of formation + Delta-G solvation = -65.244642 kcal Electronic energy + Delta-G solvation = -22473.466242 eV Core-core repulsion = 19004.743672 eV Total energy + Delta-G solvation = -3468.722570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -44.39105 -41.14625 -37.79795 -36.79305 -36.38660 -35.06756 -34.63590 -31.87724 -30.94487 -27.97560 -27.88893 -27.26081 -24.95893 -23.17398 -23.12747 -21.72815 -21.39693 -20.65996 -19.25916 -18.39496 -18.10651 -18.01455 -17.30901 -16.90178 -16.51058 -16.08715 -15.61102 -15.43516 -15.12148 -14.76250 -14.55122 -14.47629 -13.89950 -13.63898 -13.33669 -13.19777 -13.11628 -12.83583 -12.78863 -12.62858 -12.38523 -12.31242 -12.18724 -12.15259 -11.83820 -11.60857 -11.49879 -11.36831 -11.28405 -11.27317 -11.13759 -11.00628 -10.53125 -9.28924 -8.17689 -6.29651 0.31717 0.95310 1.21785 1.41349 1.44991 1.52787 1.82670 2.10820 2.42798 3.15217 3.33474 3.68947 3.78902 3.97777 4.06055 4.13137 4.20569 4.23689 4.46129 4.60567 4.67478 4.73374 4.77396 4.81236 4.83074 4.86885 4.89247 4.97841 5.05378 5.14230 5.15081 5.17699 5.29323 5.34215 5.37914 5.38862 5.52932 5.58154 5.72303 5.79919 5.82999 5.89868 6.26401 6.70368 6.86847 6.89216 7.40018 8.94159 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.052825 B = 0.001970 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.924879 B =14208.404314 C =14601.930437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.029 4.029 5 C 0.000 4.000 6 C -0.096 4.096 7 O -0.213 6.213 8 C 0.399 3.601 9 N -0.603 5.603 10 C 0.515 3.485 11 O -0.543 6.543 12 C -0.117 4.117 13 C -0.100 4.100 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.264 1.264 24 N -0.498 5.498 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.454 0.546 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.065 0.935 42 H -0.015 1.015 43 H -0.015 1.015 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.437 6.448 -0.022 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.212 4.212 4 C -0.067 4.067 5 C -0.119 4.119 6 C -0.166 4.166 7 O -0.098 6.098 8 C 0.103 3.897 9 N -0.265 5.265 10 C 0.305 3.695 11 O -0.416 6.416 12 C -0.156 4.156 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.021 4.021 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.189 1.189 24 N -0.237 5.237 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.264 0.736 35 H 0.299 0.701 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.003 0.997 43 H 0.003 0.997 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.290 6.042 -0.072 31.869 hybrid contribution 1.329 -0.514 0.022 1.425 sum -29.961 5.528 -0.050 30.467 Atomic orbital electron populations 1.21816 0.93635 1.02427 1.02179 1.21003 0.96379 0.96401 0.96961 1.21998 1.02761 0.95582 1.00823 1.20190 0.83957 1.03185 0.99358 1.22036 0.98441 0.87713 1.03732 1.25441 0.77885 1.03019 1.10234 1.84681 1.30880 1.24046 1.70238 1.22058 0.88869 0.78914 0.99811 1.42713 0.99984 1.11966 1.71796 1.21952 0.85152 0.88628 0.73794 1.90815 1.86765 1.16927 1.47089 1.21738 0.87159 0.98616 1.08133 1.21306 0.93403 0.97704 1.01396 1.21442 0.92441 0.97781 1.01658 1.19071 0.93740 0.94867 0.94377 1.21746 0.92300 0.94612 1.49354 0.91430 1.26085 1.03375 0.96037 0.94927 1.70129 1.25952 1.10247 1.51472 0.85450 0.77675 0.78282 0.79319 1.18939 1.21232 1.18924 1.70638 0.96455 1.31934 1.24721 0.92129 0.92594 0.91667 0.92390 0.93046 0.93444 0.91377 0.87650 0.89662 0.73604 0.70104 0.84619 0.84637 0.93552 0.93555 0.91674 0.91674 0.99703 0.99691 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 71.98 0.66 -0.61 16 2 C -0.09 -1.12 2.91 -10.80 -0.03 -1.15 16 3 C -0.15 -2.34 8.93 71.98 0.64 -1.70 16 4 C -0.03 -0.35 5.25 29.85 0.16 -0.20 16 5 C 0.00 0.01 6.29 41.20 0.26 0.27 16 6 C -0.10 -1.88 12.05 66.89 0.81 -1.07 16 7 O -0.21 -6.04 9.09 12.34 0.11 -5.92 16 8 C 0.40 10.03 8.88 178.94 1.59 11.62 16 9 N -0.60 -12.18 5.39 -423.80 -2.28 -14.47 16 10 C 0.52 13.19 7.79 87.66 0.68 13.88 16 11 O -0.54 -19.72 14.74 17.88 0.26 -19.46 16 12 C -0.12 -2.45 5.70 29.85 0.17 -2.28 16 13 C -0.10 -3.32 4.50 30.59 0.14 -3.18 16 14 C -0.10 -3.67 5.15 30.59 0.16 -3.52 16 15 C 0.02 0.89 4.97 29.85 0.15 1.04 16 16 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 19 N -0.94 -58.64 13.29 21.45 0.28 -58.35 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 24 N -0.50 -11.17 8.72 -301.68 -2.63 -13.80 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.30 5.49 -2.39 -0.01 1.28 16 32 H 0.11 0.74 8.11 -2.39 -0.02 0.72 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.25 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.45 5.34 8.82 -92.71 -0.82 4.52 16 36 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 40 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -79.10 366.85 4.01 -75.09 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.16 Total: 8.04 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 6.08 Total: -17.55 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -4.63 Total: -86.62 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.38 Total: -25.38 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.10 4.01 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894439705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.842 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds