Wall clock time and date at job start Tue Mar 31 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46995 * 2 1 4 4 N 1.34631 * 125.89449 * 264.69765 * 3 2 1 5 5 H 0.96992 * 124.80936 * 359.96913 * 4 3 2 6 6 C 1.36426 * 110.37596 * 179.82738 * 4 3 2 7 7 C 1.50703 * 125.45893 * 180.16285 * 6 4 3 8 8 N 1.46906 * 109.46459 * 275.29726 * 7 6 4 9 9 C 1.46906 * 110.99522 * 184.00460 * 8 7 6 10 10 H 1.08999 * 109.47277 * 325.56742 * 9 8 7 11 11 C 1.50695 * 109.46859 * 85.56742 * 9 8 7 12 12 H 1.08005 * 120.00340 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99956 * 179.97438 * 11 9 8 14 14 N 1.31511 * 119.99926 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 120.00097 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47077 * 59.99974 * 15 13 11 17 17 H 1.48499 * 109.46816 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46861 * 300.00091 * 15 13 11 19 19 C 1.52996 * 109.46683 * 205.56401 * 9 8 7 20 20 C 1.52998 * 109.47254 * 65.66177 * 19 9 8 21 21 C 1.34434 * 109.08661 * 0.43621 * 6 4 3 22 22 C 1.37838 * 125.89563 * 84.99631 * 3 2 1 23 23 C 1.47112 * 127.02287 * 0.03042 * 22 3 2 24 24 O 1.21548 * 120.00092 * 359.97438 * 23 22 3 25 25 O 1.34790 * 119.99746 * 179.97438 * 23 22 3 26 26 C 1.45201 * 116.99949 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47365 * 299.99975 * 1 2 3 28 28 H 1.09005 * 109.47515 * 60.00024 * 1 2 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47288 * 120.00154 * 2 1 3 31 31 H 1.08999 * 109.46865 * 240.00574 * 2 1 3 32 32 H 1.08998 * 109.46932 * 35.29212 * 7 6 4 33 33 H 1.09000 * 109.47675 * 155.29666 * 7 6 4 34 34 H 1.00900 * 111.00007 * 60.05513 * 8 7 6 35 35 H 0.96997 * 120.00127 * 179.97438 * 14 13 11 36 36 H 1.09012 * 109.46999 * 185.66029 * 19 9 8 37 37 H 1.08995 * 109.47400 * 305.65465 * 19 9 8 38 38 H 1.08998 * 109.46953 * 295.58298 * 20 19 9 39 39 H 1.08998 * 109.47456 * 55.58768 * 20 19 9 40 40 H 1.09006 * 109.47506 * 175.58328 * 20 19 9 41 41 H 1.08008 * 126.81220 * 179.74929 * 21 6 4 42 42 H 1.09009 * 109.46757 * 59.99547 * 26 25 23 43 43 H 1.08996 * 109.47183 * 179.97438 * 26 25 23 44 44 H 1.09004 * 109.47060 * 300.00287 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3904 2.1315 -1.0860 5 1 2.3637 1.8010 -1.9975 6 6 2.7931 3.3834 -0.7229 7 6 3.2617 4.4595 -1.6681 8 7 4.6922 4.2765 -1.9480 9 6 5.2067 5.3634 -2.7917 10 1 4.4317 5.6795 -3.4899 11 6 5.6053 6.5282 -1.9226 12 1 5.4878 6.4673 -0.8507 13 6 6.1201 7.6716 -2.4958 14 7 6.2629 7.7459 -3.8010 15 14 6.6136 9.1158 -1.4185 16 1 7.6689 8.6854 -0.4665 17 1 7.1339 10.2145 -2.2715 18 1 5.4297 9.5958 -0.6614 19 6 6.4260 4.8691 -3.5727 20 6 5.9938 3.7811 -4.5578 21 6 2.7108 3.5012 0.6137 22 6 2.2098 2.2153 1.1124 23 6 1.9508 1.8486 2.5133 24 8 1.5336 0.7394 2.7840 25 8 2.1759 2.7425 3.4966 26 6 1.8977 2.3122 4.8552 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8899 31 1 1.8932 -0.5137 -0.8900 32 1 2.6983 4.3959 -2.5991 33 1 3.1026 5.4372 -1.2133 34 1 4.8656 3.3771 -2.3712 35 1 6.6247 8.5505 -4.2044 36 1 6.8680 5.7011 -4.1211 37 1 7.1605 4.4602 -2.8790 38 1 5.6242 2.9171 -4.0057 39 1 5.2030 4.1668 -5.2012 40 1 6.8466 3.4844 -5.1685 41 1 2.9631 4.3701 1.2036 42 1 2.5173 1.4485 5.0968 43 1 2.1215 3.1244 5.5466 44 1 0.8457 2.0401 4.9418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894470393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:49 Heat of formation + Delta-G solvation = -58.498719 kcal Electronic energy + Delta-G solvation = -23657.712901 eV Core-core repulsion = 20189.282856 eV Total energy + Delta-G solvation = -3468.430045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26884 -39.71873 -36.49511 -36.14559 -33.88281 -32.46709 -31.29621 -31.17201 -28.69434 -27.65133 -26.52805 -24.52427 -23.78440 -22.62291 -21.77081 -20.24654 -19.57748 -19.52801 -17.31835 -16.40766 -16.33183 -16.13729 -15.86130 -14.97659 -14.77945 -14.44024 -14.22906 -14.01409 -13.63470 -13.45226 -13.06229 -12.86379 -12.72120 -12.49371 -12.33035 -12.11640 -12.01630 -11.75063 -11.56757 -11.31873 -11.11972 -11.02957 -10.82747 -10.67568 -10.65958 -10.28940 -9.98769 -9.78068 -9.70708 -9.15308 -8.73736 -8.36606 -7.92402 -7.31565 -5.98974 -4.03281 1.57577 2.57058 2.81230 3.34753 3.36869 3.38746 3.42775 3.45505 4.44355 4.64771 4.90002 4.97866 5.11043 5.17071 5.20503 5.25195 5.31112 5.40120 5.44403 5.53308 5.53870 5.73435 5.80070 5.88901 6.05174 6.06970 6.08827 6.12808 6.29021 6.33367 6.37471 6.60310 6.76151 6.94141 6.99823 7.08951 7.18478 7.39268 7.52239 7.72302 7.88746 8.03306 8.20094 8.33554 8.66877 9.04712 9.62103 11.06407 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.003760 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.354355 B = 7445.460835 C = 8820.028921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C 0.115 3.885 4 N -0.539 5.539 5 H 0.414 0.586 6 C 0.031 3.969 7 C 0.132 3.868 8 N -0.679 5.679 9 C 0.219 3.781 10 H 0.003 0.997 11 C -0.495 4.495 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.126 4.126 22 C -0.232 4.232 23 C 0.544 3.456 24 O -0.529 6.529 25 O -0.353 6.353 26 C 0.039 3.961 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.315 0.685 35 H 0.260 0.740 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.151 0.849 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -12.965 6.887 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.005 4.005 4 N -0.134 5.134 5 H 0.251 0.749 6 C -0.078 4.078 7 C 0.002 3.998 8 N -0.311 5.311 9 C 0.112 3.888 10 H 0.020 0.980 11 C -0.534 4.534 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.165 4.165 20 C -0.207 4.207 21 C -0.150 4.150 22 C -0.241 4.241 23 C 0.392 3.608 24 O -0.421 6.421 25 O -0.269 6.269 26 C -0.055 4.055 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.169 0.831 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.666 -12.815 7.305 17.636 hybrid contribution -0.050 0.383 -0.614 0.725 sum -9.716 -12.432 6.692 17.139 Atomic orbital electron populations 1.21660 0.94062 1.01904 1.02191 1.20288 0.96628 0.89175 1.03939 1.20417 1.00161 0.94260 0.85631 1.41579 1.51361 1.11855 1.08631 0.74908 1.20572 1.05330 0.86238 0.95631 1.20420 0.89869 0.95300 0.94200 1.60744 1.12182 1.05619 1.52530 1.19185 0.91972 0.87673 0.89935 0.97967 1.21177 1.40814 0.97476 0.93907 0.91865 1.24954 0.95946 0.98568 0.94988 1.69854 1.46348 1.28225 1.09298 0.86594 0.78956 0.81787 0.80261 1.20255 1.21526 1.20323 1.21778 0.99790 0.97817 0.97074 1.21882 1.00134 0.99088 0.99606 1.21830 1.03678 0.96938 0.92528 1.19273 1.18979 0.97301 0.88504 1.20172 0.73369 0.81864 0.85407 1.90769 1.44532 1.22303 1.84466 1.86617 1.79466 1.44078 1.16730 1.23188 1.01360 1.01414 0.79576 0.91904 0.93103 0.92075 0.88162 0.91213 0.95946 0.88132 0.86836 0.93007 0.88091 0.93939 0.94868 0.93895 0.94301 0.83113 0.92173 0.88357 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.06 -0.66 5.81 -27.88 -0.16 -0.82 16 3 C 0.11 1.52 6.47 -81.51 -0.53 0.99 16 4 N -0.54 -6.82 5.89 -5.20 -0.03 -6.85 16 5 H 0.41 4.08 8.96 -40.82 -0.37 3.71 16 6 C 0.03 0.48 6.66 -81.89 -0.55 -0.07 16 7 C 0.13 2.31 5.97 -4.97 -0.03 2.28 16 8 N -0.68 -13.58 6.26 -109.22 -0.68 -14.26 16 9 C 0.22 5.19 2.02 -68.87 -0.14 5.05 16 10 H 0.00 0.07 7.84 -51.93 -0.41 -0.34 16 11 C -0.50 -13.21 8.58 -34.44 -0.30 -13.50 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 14 N -0.90 -24.90 11.29 55.43 0.63 -24.27 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.13 -2.86 5.36 -26.73 -0.14 -3.00 16 20 C -0.15 -2.75 9.67 37.16 0.36 -2.39 16 21 C -0.13 -2.04 10.89 -37.49 -0.41 -2.45 16 22 C -0.23 -3.56 6.33 -103.01 -0.65 -4.22 16 23 C 0.54 8.37 7.95 34.33 0.27 8.64 16 24 O -0.53 -8.41 14.66 -19.30 -0.28 -8.69 16 25 O -0.35 -5.03 10.47 -40.74 -0.43 -5.45 16 26 C 0.04 0.39 10.57 101.05 1.07 1.46 16 27 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.19 6.79 -51.94 -0.35 0.84 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.10 1.92 7.95 -51.93 -0.41 1.51 16 34 H 0.31 5.74 6.61 -39.29 -0.26 5.48 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.10 2.60 5.94 -51.92 -0.31 2.29 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.54 6.61 -51.93 -0.34 0.19 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -29.94 365.20 -8.31 -38.25 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.06 Total: 7.27 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.93 Total: -7.61 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.09 Total: -45.39 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.71 Total: -14.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.94 -8.31 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894470393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.249 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds