Wall clock time and date at job start Tue Mar 31 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46995 * 2 1 4 4 N 1.34631 * 125.89449 * 264.69765 * 3 2 1 5 5 H 0.96992 * 124.80936 * 359.96913 * 4 3 2 6 6 C 1.36426 * 110.37596 * 179.82738 * 4 3 2 7 7 C 1.50703 * 125.45893 * 180.16285 * 6 4 3 8 8 N 1.46906 * 109.46459 * 275.29726 * 7 6 4 9 9 C 1.46906 * 110.99522 * 184.00460 * 8 7 6 10 10 H 1.08999 * 109.47277 * 325.56742 * 9 8 7 11 11 C 1.50695 * 109.46859 * 85.56742 * 9 8 7 12 12 H 1.08005 * 120.00340 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99956 * 179.97438 * 11 9 8 14 14 N 1.31511 * 119.99926 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 120.00097 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47077 * 59.99974 * 15 13 11 17 17 H 1.48499 * 109.46816 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46861 * 300.00091 * 15 13 11 19 19 C 1.52996 * 109.46683 * 205.56401 * 9 8 7 20 20 C 1.52998 * 109.47254 * 65.66177 * 19 9 8 21 21 C 1.34434 * 109.08661 * 0.43621 * 6 4 3 22 22 C 1.37838 * 125.89563 * 84.99631 * 3 2 1 23 23 C 1.47112 * 127.02287 * 0.03042 * 22 3 2 24 24 O 1.21548 * 120.00092 * 359.97438 * 23 22 3 25 25 O 1.34790 * 119.99746 * 179.97438 * 23 22 3 26 26 C 1.45201 * 116.99949 * 179.97438 * 25 23 22 27 27 H 1.09002 * 109.47365 * 299.99975 * 1 2 3 28 28 H 1.09005 * 109.47515 * 60.00024 * 1 2 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47288 * 120.00154 * 2 1 3 31 31 H 1.08999 * 109.46865 * 240.00574 * 2 1 3 32 32 H 1.08998 * 109.46932 * 35.29212 * 7 6 4 33 33 H 1.09000 * 109.47675 * 155.29666 * 7 6 4 34 34 H 1.00900 * 111.00007 * 60.05513 * 8 7 6 35 35 H 0.96997 * 120.00127 * 179.97438 * 14 13 11 36 36 H 1.09012 * 109.46999 * 185.66029 * 19 9 8 37 37 H 1.08995 * 109.47400 * 305.65465 * 19 9 8 38 38 H 1.08998 * 109.46953 * 295.58298 * 20 19 9 39 39 H 1.08998 * 109.47456 * 55.58768 * 20 19 9 40 40 H 1.09006 * 109.47506 * 175.58328 * 20 19 9 41 41 H 1.08008 * 126.81220 * 179.74929 * 21 6 4 42 42 H 1.09009 * 109.46757 * 59.99547 * 26 25 23 43 43 H 1.08996 * 109.47183 * 179.97438 * 26 25 23 44 44 H 1.09004 * 109.47060 * 300.00287 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3904 2.1315 -1.0860 5 1 2.3637 1.8010 -1.9975 6 6 2.7931 3.3834 -0.7229 7 6 3.2617 4.4595 -1.6681 8 7 4.6922 4.2765 -1.9480 9 6 5.2067 5.3634 -2.7917 10 1 4.4317 5.6795 -3.4899 11 6 5.6053 6.5282 -1.9226 12 1 5.4878 6.4673 -0.8507 13 6 6.1201 7.6716 -2.4958 14 7 6.2629 7.7459 -3.8010 15 14 6.6136 9.1158 -1.4185 16 1 7.6689 8.6854 -0.4665 17 1 7.1339 10.2145 -2.2715 18 1 5.4297 9.5958 -0.6614 19 6 6.4260 4.8691 -3.5727 20 6 5.9938 3.7811 -4.5578 21 6 2.7108 3.5012 0.6137 22 6 2.2098 2.2153 1.1124 23 6 1.9508 1.8486 2.5133 24 8 1.5336 0.7394 2.7840 25 8 2.1759 2.7425 3.4966 26 6 1.8977 2.3122 4.8552 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8899 31 1 1.8932 -0.5137 -0.8900 32 1 2.6983 4.3959 -2.5991 33 1 3.1026 5.4372 -1.2133 34 1 4.8656 3.3771 -2.3712 35 1 6.6247 8.5505 -4.2044 36 1 6.8680 5.7011 -4.1211 37 1 7.1605 4.4602 -2.8790 38 1 5.6242 2.9171 -4.0057 39 1 5.2030 4.1668 -5.2012 40 1 6.8466 3.4844 -5.1685 41 1 2.9631 4.3701 1.2036 42 1 2.5173 1.4485 5.0968 43 1 2.1215 3.1244 5.5466 44 1 0.8457 2.0401 4.9418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894470393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:48 Heat of formation + Delta-G solvation = -76.534087 kcal Electronic energy + Delta-G solvation = -23658.494973 eV Core-core repulsion = 20189.282856 eV Total energy + Delta-G solvation = -3469.212117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40147 -40.82663 -38.15712 -37.30127 -35.05944 -34.14676 -32.91517 -32.30153 -30.01369 -28.67441 -28.17072 -25.92032 -24.87602 -24.27561 -22.85333 -21.60396 -21.23497 -20.63235 -18.48335 -18.30982 -17.52146 -17.21261 -16.93346 -16.78343 -16.22093 -15.85011 -15.49004 -15.16417 -14.85825 -14.64381 -14.43952 -14.09735 -13.90247 -13.84719 -13.72179 -13.38639 -13.07380 -13.04195 -12.90544 -12.80601 -12.64074 -12.52449 -12.30603 -11.95609 -11.93325 -11.68212 -11.56228 -11.47797 -11.37181 -11.04508 -10.40067 -9.89352 -9.15473 -8.96080 -8.04333 -6.15573 0.46577 1.33740 1.45207 1.45920 1.53610 1.80943 2.27166 2.31481 2.47014 3.21476 3.62841 3.75143 3.95139 4.07204 4.20673 4.31608 4.36005 4.38307 4.39913 4.48515 4.52938 4.57623 4.64763 4.70648 4.72560 4.84431 4.89756 4.94374 5.06565 5.10833 5.22484 5.26425 5.33763 5.37982 5.50949 5.59680 5.73503 5.77065 5.90600 5.98067 6.36040 6.47402 6.53074 6.91437 6.96190 6.98348 7.53400 8.98351 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.003760 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.354355 B = 7445.460835 C = 8820.028921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C 0.135 3.865 4 N -0.524 5.524 5 H 0.431 0.569 6 C 0.027 3.973 7 C 0.140 3.860 8 N -0.682 5.682 9 C 0.226 3.774 10 H -0.023 1.023 11 C -0.512 4.512 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.951 3.049 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.122 4.122 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.261 4.261 23 C 0.541 3.459 24 O -0.540 6.540 25 O -0.368 6.368 26 C 0.031 3.969 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.328 0.672 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.141 0.859 42 H 0.062 0.938 43 H 0.126 0.874 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -14.596 6.813 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C 0.014 3.986 4 N -0.121 5.121 5 H 0.270 0.730 6 C -0.082 4.082 7 C 0.010 3.990 8 N -0.314 5.314 9 C 0.118 3.882 10 H -0.006 1.006 11 C -0.551 4.551 12 H 0.068 0.932 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.196 4.196 21 C -0.164 4.164 22 C -0.269 4.269 23 C 0.389 3.611 24 O -0.433 6.433 25 O -0.284 6.284 26 C -0.062 4.062 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.216 -14.458 7.225 19.121 hybrid contribution 0.083 0.857 -0.525 1.009 sum -10.133 -13.601 6.700 18.236 Atomic orbital electron populations 1.21632 0.93193 1.03046 1.01551 1.20401 0.97214 0.87291 1.04940 1.20849 0.97846 0.94995 0.84916 1.41459 1.50427 1.10681 1.09494 0.72957 1.20092 1.06341 0.86998 0.94818 1.20219 0.88647 0.95124 0.94989 1.60576 1.13967 1.05232 1.51636 1.18935 0.91693 0.88109 0.89414 1.00559 1.21461 1.40902 0.99050 0.93683 0.93157 1.25611 0.96072 1.00785 0.96072 1.69973 1.46872 1.28654 1.10409 0.85721 0.78609 0.79131 0.78802 1.20121 1.21068 1.19909 1.21601 0.98935 0.98112 0.97442 1.21744 1.00741 0.98257 0.98845 1.21873 1.04210 0.97325 0.93038 1.19475 1.20543 0.97465 0.89401 1.20230 0.73239 0.81867 0.85739 1.90747 1.45237 1.22605 1.84709 1.86598 1.79364 1.44294 1.18187 1.23501 1.01850 1.02769 0.78042 0.94105 0.92155 0.90091 0.89228 0.88088 0.94552 0.90434 0.85384 0.93108 0.91349 0.94744 0.92348 0.94154 0.92600 0.84149 0.91899 0.85622 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.60 16 2 C -0.06 -1.12 5.81 29.85 0.17 -0.95 16 3 C 0.14 3.32 6.47 42.04 0.27 3.59 16 4 N -0.52 -12.12 5.89 -170.37 -1.00 -13.12 16 5 H 0.43 7.09 8.96 -92.71 -0.83 6.26 16 6 C 0.03 0.80 6.66 40.98 0.27 1.07 16 7 C 0.14 4.87 5.97 85.56 0.51 5.38 16 8 N -0.68 -26.98 6.26 -499.45 -3.13 -30.10 16 9 C 0.23 10.83 2.02 44.16 0.09 10.92 16 10 H -0.02 -1.21 7.84 -2.39 -0.02 -1.23 16 11 C -0.51 -27.87 8.58 25.60 0.22 -27.65 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.01 0.70 5.29 84.66 0.45 1.15 16 14 N -0.92 -51.78 11.29 21.45 0.24 -51.53 16 15 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 C -0.12 -5.54 5.36 30.59 0.16 -5.38 16 20 C -0.14 -4.83 9.67 71.98 0.70 -4.13 16 21 C -0.14 -4.57 10.89 23.62 0.26 -4.31 16 22 C -0.26 -7.88 6.33 -18.82 -0.12 -8.00 16 23 C 0.54 16.54 7.95 70.15 0.56 17.10 16 24 O -0.54 -16.89 14.66 19.68 0.29 -16.60 16 25 O -0.37 -10.46 10.47 -57.01 -0.60 -11.06 16 26 C 0.03 0.61 10.57 113.37 1.20 1.81 16 27 H 0.04 0.88 8.02 -2.39 -0.02 0.86 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.94 6.79 -2.39 -0.02 1.92 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 33 H 0.08 3.05 7.95 -2.39 -0.02 3.03 16 34 H 0.33 11.38 6.61 -89.69 -0.59 10.79 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.07 3.57 5.94 -2.38 -0.01 3.56 16 37 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.73 6.61 -2.39 -0.02 1.71 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -65.47 365.20 2.86 -62.60 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.42 Total: 25.00 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.45 Total: -11.00 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -3.89 Total: -94.76 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.31 Total: -27.66 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.47 2.86 -62.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894470393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.931 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds