Wall clock time and date at job start Tue Mar 31 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47356 * 2 1 4 4 C 1.38129 * 126.29879 * 276.32987 * 3 2 1 5 5 C 1.47285 * 126.42402 * 359.97438 * 4 3 2 6 6 O 1.21528 * 119.99981 * 359.97438 * 5 4 3 7 7 O 1.34756 * 120.00204 * 180.02562 * 5 4 3 8 8 C 1.45196 * 117.00040 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46798 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00412 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00040 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00371 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47036 * 59.99938 * 14 12 10 16 16 H 1.48506 * 109.47276 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47002 * 299.99751 * 14 12 10 18 18 C 1.41340 * 107.14679 * 179.97438 * 4 3 2 19 19 N 1.30427 * 108.01698 * 0.02562 * 18 4 3 20 20 N 1.34222 * 126.29622 * 96.01545 * 3 2 1 21 21 C 1.46497 * 125.74155 * 0.02562 * 20 3 2 22 22 C 1.52993 * 109.47251 * 66.41129 * 21 20 3 23 23 C 1.53006 * 109.47112 * 186.41301 * 21 20 3 24 24 C 1.53004 * 109.47358 * 306.41213 * 21 20 3 25 25 H 1.08999 * 109.46969 * 176.07183 * 1 2 3 26 26 H 1.09000 * 109.46957 * 296.06508 * 1 2 3 27 27 H 1.08992 * 109.47400 * 56.06917 * 1 2 3 28 28 H 1.09000 * 109.47395 * 120.00256 * 2 1 3 29 29 H 1.09000 * 109.46884 * 239.99977 * 2 1 3 30 30 H 1.08999 * 109.47309 * 299.99420 * 8 7 5 31 31 H 1.09000 * 109.47691 * 60.00128 * 8 7 5 32 32 H 1.08991 * 109.47688 * 299.99902 * 9 8 7 33 33 H 1.09001 * 109.47106 * 60.00420 * 9 8 7 34 34 H 0.97001 * 120.00679 * 180.02562 * 13 12 10 35 35 H 1.07999 * 125.98827 * 180.02562 * 18 4 3 36 36 H 1.09003 * 109.47065 * 54.55311 * 22 21 20 37 37 H 1.09004 * 109.47376 * 174.54861 * 22 21 20 38 38 H 1.09002 * 109.47436 * 294.54845 * 22 21 20 39 39 H 1.08991 * 109.47315 * 59.99829 * 23 21 20 40 40 H 1.08999 * 109.47248 * 180.02562 * 23 21 20 41 41 H 1.09006 * 109.46804 * 299.99677 * 23 21 20 42 42 H 1.08994 * 109.47155 * 68.08298 * 24 21 20 43 43 H 1.09000 * 109.46929 * 188.09084 * 24 21 20 44 44 H 1.09001 * 109.46824 * 308.08361 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1892 2.2326 -1.1065 5 6 1.8977 1.8717 -2.5043 6 8 1.4756 0.7636 -2.7705 7 8 2.1000 2.7699 -3.4884 8 6 1.7917 2.3451 -4.8421 9 6 2.0819 3.4903 -5.8144 10 6 1.7626 3.0493 -7.2196 11 1 1.3894 2.0521 -7.4011 12 6 1.9466 3.9188 -8.2737 13 7 2.4014 5.1329 -8.0530 14 14 1.5501 3.3724 -10.0154 15 1 0.1149 3.0011 -10.1031 16 1 1.8319 4.4838 -10.9592 17 1 2.3876 2.1981 -10.3686 18 6 2.6820 3.4746 -0.6455 19 7 2.8091 3.4022 0.6505 20 7 2.4041 2.1321 1.0758 21 6 2.3917 1.6573 2.4617 22 6 3.4264 0.5427 2.6282 23 6 2.7342 2.8156 3.4008 24 6 1.0014 1.1176 2.8035 25 1 -0.3633 -1.0253 -0.0704 26 1 -0.3633 0.4516 0.9232 27 1 -0.3634 0.5736 -0.8526 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.4065 1.4833 -5.1015 31 1 0.7383 2.0726 -4.9065 32 1 1.4669 4.3519 -5.5551 33 1 3.1353 3.7632 -5.7503 34 1 2.5306 5.7448 -8.7945 35 1 2.9127 4.3329 -1.2590 36 1 4.4007 0.8983 2.2928 37 1 3.4860 0.2561 3.6782 38 1 3.1298 -0.3205 2.0323 39 1 1.9971 3.6097 3.2821 40 1 2.7254 2.4623 4.4318 41 1 3.7247 3.2000 3.1572 42 1 0.8156 0.2062 2.2354 43 1 0.9489 0.8982 3.8699 44 1 0.2492 1.8643 2.5488 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919386823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:57 Heat of formation + Delta-G solvation = -31.455356 kcal Electronic energy + Delta-G solvation = -23921.901511 eV Core-core repulsion = 20454.644155 eV Total energy + Delta-G solvation = -3467.257357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77669 -39.37059 -37.14850 -35.91275 -34.11749 -33.26705 -30.85757 -30.16691 -29.33723 -27.93060 -27.78576 -25.28804 -24.14303 -22.65352 -22.26505 -20.83430 -19.91513 -18.88069 -17.39381 -16.47904 -15.98480 -15.80957 -15.61939 -15.44414 -15.31709 -14.67381 -14.47476 -14.05816 -13.80760 -13.31158 -13.08838 -12.81770 -12.75801 -12.62716 -12.55493 -12.43396 -12.30481 -12.18842 -11.88366 -11.64689 -11.31079 -11.25087 -11.11872 -10.98755 -10.69734 -10.64511 -10.55367 -10.01778 -9.53479 -9.53059 -9.45603 -9.25149 -8.66413 -8.38895 -6.05453 -4.09514 1.43391 2.10369 2.20688 3.33308 3.35910 3.37774 3.47334 3.53280 4.05543 4.27254 4.28860 4.41312 4.44197 4.63022 4.80998 5.00378 5.06520 5.10612 5.17388 5.21915 5.27028 5.28618 5.30934 5.35293 5.38684 5.50258 5.57258 5.65385 5.74198 5.82283 5.86609 6.02834 6.14765 6.20007 6.23095 6.48709 6.73488 6.78342 7.15129 7.55191 7.63600 7.70269 7.93453 8.28154 8.46090 8.96019 9.54448 11.06094 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033145 B = 0.002913 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.582418 B = 9608.494925 C =10169.789939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C 0.165 3.835 4 C -0.277 4.277 5 C 0.536 3.464 6 O -0.528 6.528 7 O -0.353 6.353 8 C 0.079 3.921 9 C 0.025 3.975 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.103 3.897 19 N -0.301 5.301 20 N -0.350 5.350 21 C 0.178 3.822 22 C -0.167 4.167 23 C -0.142 4.142 24 C -0.174 4.174 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.198 0.802 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -8.881 25.645 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C 0.032 3.968 4 C -0.290 4.290 5 C 0.382 3.618 6 O -0.420 6.420 7 O -0.269 6.269 8 C 0.006 3.994 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.084 4.084 19 N -0.119 5.119 20 N -0.130 5.130 21 C 0.096 3.904 22 C -0.225 4.225 23 C -0.199 4.199 24 C -0.232 4.232 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.215 0.785 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.393 -8.399 26.651 27.946 hybrid contribution -0.397 -0.599 -1.907 2.038 sum -0.790 -8.998 24.744 26.342 Atomic orbital electron populations 1.21828 0.93269 1.02816 1.02648 1.20601 0.97392 0.88589 1.04528 1.21386 0.94146 0.94911 0.86328 1.19223 1.21624 0.96845 0.91292 1.19928 0.74150 0.82563 0.85196 1.90749 1.44069 1.22556 1.84579 1.86562 1.78192 1.43670 1.18524 1.23583 0.99824 1.00606 0.75404 1.19155 0.98458 0.92404 0.91218 1.20956 1.44920 0.99634 0.90874 0.92335 1.24977 0.94969 0.94826 0.99375 1.69964 1.45065 1.05861 1.32018 0.86544 0.78966 0.78179 0.83669 1.20095 1.21162 1.20089 1.24250 0.94907 0.97745 0.91503 1.77185 1.23313 0.98124 1.13275 1.48755 1.48668 1.09701 1.05895 1.20799 0.97043 0.95489 0.77094 1.22398 0.98945 0.97676 1.03448 1.21893 1.03702 0.96831 0.97492 1.22616 0.94716 1.02623 1.03238 0.91469 0.92503 0.91356 0.90381 0.87464 0.92439 0.92447 0.95371 0.95371 0.92697 0.78487 0.91320 0.90034 0.91233 0.91287 0.90915 0.90985 0.90261 0.90055 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.40 37.16 0.35 -1.13 16 2 C -0.07 -0.78 4.69 -27.89 -0.13 -0.91 16 3 C 0.16 2.16 5.78 -81.59 -0.47 1.69 16 4 C -0.28 -4.42 6.13 -105.08 -0.64 -5.06 16 5 C 0.54 10.19 7.95 34.41 0.27 10.47 16 6 O -0.53 -10.57 14.55 -19.29 -0.28 -10.85 16 7 O -0.35 -7.45 10.07 -40.64 -0.41 -7.86 16 8 C 0.08 1.80 5.41 37.16 0.20 2.00 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 11 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.10 1.52 11.87 -16.97 -0.20 1.32 16 19 N -0.30 -4.17 11.54 30.87 0.36 -3.81 16 20 N -0.35 -4.15 3.43 -44.00 -0.15 -4.30 16 21 C 0.18 1.44 1.06 -131.82 -0.14 1.30 16 22 C -0.17 -1.09 8.49 37.15 0.32 -0.78 16 23 C -0.14 -1.04 7.98 37.16 0.30 -0.75 16 24 C -0.17 -1.11 7.24 37.16 0.27 -0.84 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.48 5.71 -51.93 -0.30 0.18 16 27 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 28 H 0.08 0.61 4.17 -51.93 -0.22 0.40 16 29 H 0.11 1.34 6.86 -51.93 -0.36 0.98 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.20 2.60 8.06 -52.49 -0.42 2.18 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.44 5.63 -51.93 -0.29 0.15 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.08 0.48 4.04 -51.93 -0.21 0.27 16 43 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16 44 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -32.72 355.60 -6.66 -39.38 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.81 Total: -2.73 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.44 Total: -5.84 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.94 Total: -34.09 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.69 Total: -18.71 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.72 -6.66 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919386823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.929 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds