Wall clock time and date at job start Tue Mar 31 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47356 * 2 1 4 4 C 1.38129 * 126.29879 * 276.32987 * 3 2 1 5 5 C 1.47285 * 126.42402 * 359.97438 * 4 3 2 6 6 O 1.21528 * 119.99981 * 359.97438 * 5 4 3 7 7 O 1.34756 * 120.00204 * 180.02562 * 5 4 3 8 8 C 1.45196 * 117.00040 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46798 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00412 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00040 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00371 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47036 * 59.99938 * 14 12 10 16 16 H 1.48506 * 109.47276 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47002 * 299.99751 * 14 12 10 18 18 C 1.41340 * 107.14679 * 179.97438 * 4 3 2 19 19 N 1.30427 * 108.01698 * 0.02562 * 18 4 3 20 20 N 1.34222 * 126.29622 * 96.01545 * 3 2 1 21 21 C 1.46497 * 125.74155 * 0.02562 * 20 3 2 22 22 C 1.52993 * 109.47251 * 66.41129 * 21 20 3 23 23 C 1.53006 * 109.47112 * 186.41301 * 21 20 3 24 24 C 1.53004 * 109.47358 * 306.41213 * 21 20 3 25 25 H 1.08999 * 109.46969 * 176.07183 * 1 2 3 26 26 H 1.09000 * 109.46957 * 296.06508 * 1 2 3 27 27 H 1.08992 * 109.47400 * 56.06917 * 1 2 3 28 28 H 1.09000 * 109.47395 * 120.00256 * 2 1 3 29 29 H 1.09000 * 109.46884 * 239.99977 * 2 1 3 30 30 H 1.08999 * 109.47309 * 299.99420 * 8 7 5 31 31 H 1.09000 * 109.47691 * 60.00128 * 8 7 5 32 32 H 1.08991 * 109.47688 * 299.99902 * 9 8 7 33 33 H 1.09001 * 109.47106 * 60.00420 * 9 8 7 34 34 H 0.97001 * 120.00679 * 180.02562 * 13 12 10 35 35 H 1.07999 * 125.98827 * 180.02562 * 18 4 3 36 36 H 1.09003 * 109.47065 * 54.55311 * 22 21 20 37 37 H 1.09004 * 109.47376 * 174.54861 * 22 21 20 38 38 H 1.09002 * 109.47436 * 294.54845 * 22 21 20 39 39 H 1.08991 * 109.47315 * 59.99829 * 23 21 20 40 40 H 1.08999 * 109.47248 * 180.02562 * 23 21 20 41 41 H 1.09006 * 109.46804 * 299.99677 * 23 21 20 42 42 H 1.08994 * 109.47155 * 68.08298 * 24 21 20 43 43 H 1.09000 * 109.46929 * 188.09084 * 24 21 20 44 44 H 1.09001 * 109.46824 * 308.08361 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1892 2.2326 -1.1065 5 6 1.8977 1.8717 -2.5043 6 8 1.4756 0.7636 -2.7705 7 8 2.1000 2.7699 -3.4884 8 6 1.7917 2.3451 -4.8421 9 6 2.0819 3.4903 -5.8144 10 6 1.7626 3.0493 -7.2196 11 1 1.3894 2.0521 -7.4011 12 6 1.9466 3.9188 -8.2737 13 7 2.4014 5.1329 -8.0530 14 14 1.5501 3.3724 -10.0154 15 1 0.1149 3.0011 -10.1031 16 1 1.8319 4.4838 -10.9592 17 1 2.3876 2.1981 -10.3686 18 6 2.6820 3.4746 -0.6455 19 7 2.8091 3.4022 0.6505 20 7 2.4041 2.1321 1.0758 21 6 2.3917 1.6573 2.4617 22 6 3.4264 0.5427 2.6282 23 6 2.7342 2.8156 3.4008 24 6 1.0014 1.1176 2.8035 25 1 -0.3633 -1.0253 -0.0704 26 1 -0.3633 0.4516 0.9232 27 1 -0.3634 0.5736 -0.8526 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.4065 1.4833 -5.1015 31 1 0.7383 2.0726 -4.9065 32 1 1.4669 4.3519 -5.5551 33 1 3.1353 3.7632 -5.7503 34 1 2.5306 5.7448 -8.7945 35 1 2.9127 4.3329 -1.2590 36 1 4.4007 0.8983 2.2928 37 1 3.4860 0.2561 3.6782 38 1 3.1298 -0.3205 2.0323 39 1 1.9971 3.6097 3.2821 40 1 2.7254 2.4623 4.4318 41 1 3.7247 3.2000 3.1572 42 1 0.8156 0.2062 2.2354 43 1 0.9489 0.8982 3.8699 44 1 0.2492 1.8643 2.5488 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919386823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:56 Heat of formation + Delta-G solvation = -50.121971 kcal Electronic energy + Delta-G solvation = -23922.710956 eV Core-core repulsion = 20454.644155 eV Total energy + Delta-G solvation = -3468.066802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.82868 -40.93043 -37.91869 -37.53006 -35.43082 -35.03017 -32.46553 -31.56484 -30.51224 -28.45639 -28.34782 -27.17345 -25.35081 -23.87361 -23.28998 -22.75681 -21.21791 -19.83476 -18.86449 -18.17018 -17.50387 -17.41492 -16.86180 -16.49201 -16.41599 -16.11163 -15.53980 -15.01336 -14.79752 -14.50833 -14.43504 -14.30887 -14.22704 -13.42189 -13.32630 -13.20275 -13.12632 -13.08344 -13.03673 -12.82897 -12.73384 -12.54616 -12.53598 -12.30398 -12.17859 -11.94883 -11.77015 -11.50002 -11.48287 -11.40294 -11.22628 -10.59509 -10.44647 -9.82053 -8.25452 -6.38901 0.28126 0.98455 1.17751 1.41652 1.45674 1.53550 1.93008 2.14894 2.42184 3.08685 3.31293 3.35805 3.70853 3.75497 3.83231 3.85108 3.99466 4.25692 4.26920 4.30212 4.34831 4.48127 4.54913 4.57824 4.62061 4.68011 4.74004 4.77081 4.80001 4.83794 4.90339 5.05524 5.12023 5.18635 5.22371 5.30350 5.32599 5.42242 5.48937 5.60723 5.77081 5.88611 6.08276 6.45116 6.74015 6.88703 7.30706 8.87170 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033145 B = 0.002913 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.582418 B = 9608.494925 C =10169.789939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.179 3.821 4 C -0.312 4.312 5 C 0.534 3.466 6 O -0.542 6.542 7 O -0.364 6.364 8 C 0.095 3.905 9 C 0.032 3.968 10 C -0.551 4.551 11 H 0.066 0.934 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.974 3.026 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.095 3.905 19 N -0.309 5.309 20 N -0.339 5.339 21 C 0.163 3.837 22 C -0.164 4.164 23 C -0.139 4.139 24 C -0.172 4.172 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.268 0.732 35 H 0.202 0.798 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 -10.871 27.481 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.044 3.956 4 C -0.325 4.325 5 C 0.382 3.618 6 O -0.435 6.435 7 O -0.280 6.280 8 C 0.022 3.978 9 C -0.005 4.005 10 C -0.588 4.588 11 H 0.084 0.916 12 C -0.193 4.193 13 N -0.567 5.567 14 Si 0.798 3.202 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.092 4.092 19 N -0.127 5.127 20 N -0.118 5.118 21 C 0.082 3.918 22 C -0.222 4.222 23 C -0.196 4.196 24 C -0.229 4.229 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.218 0.782 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.913 -10.390 28.534 30.381 hybrid contribution -0.210 0.021 -2.278 2.288 sum -1.123 -10.370 26.256 28.252 Atomic orbital electron populations 1.21821 0.92532 1.03736 1.02100 1.20720 0.97878 0.86962 1.05395 1.21713 0.92512 0.95625 0.85799 1.19206 1.24622 0.98423 0.90264 1.20387 0.73644 0.82066 0.85740 1.90725 1.44983 1.22922 1.84825 1.86546 1.78778 1.44591 1.18106 1.23121 0.99800 0.98809 0.76117 1.18966 0.96431 0.92909 0.92226 1.21356 1.45370 1.00214 0.91882 0.91603 1.25984 0.94400 0.94712 1.04251 1.70096 1.45806 1.07131 1.33668 0.85365 0.79229 0.78053 0.77592 1.18991 1.20476 1.18982 1.24357 0.95124 0.97737 0.91987 1.77146 1.23418 0.99510 1.12655 1.49231 1.46700 1.08681 1.07149 1.21384 0.99055 0.96408 0.74926 1.22424 0.97323 0.96811 1.05638 1.21913 1.02255 0.96281 0.99199 1.22646 0.92700 1.02161 1.05436 0.89409 0.90651 0.94708 0.86799 0.89279 0.92255 0.92281 0.97635 0.97636 0.92342 0.78152 0.92901 0.86789 0.90785 0.92692 0.87546 0.92507 0.89719 0.86846 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.40 71.98 0.68 -1.98 16 2 C -0.07 -1.41 4.69 29.85 0.14 -1.27 16 3 C 0.18 4.58 5.78 42.17 0.24 4.82 16 4 C -0.31 -10.22 6.13 -20.16 -0.12 -10.35 16 5 C 0.53 21.07 7.95 70.20 0.56 21.63 16 6 O -0.54 -22.27 14.55 19.75 0.29 -21.98 16 7 O -0.36 -16.04 10.07 -56.67 -0.57 -16.61 16 8 C 0.09 4.51 5.41 71.98 0.39 4.90 16 9 C 0.03 1.78 5.35 29.85 0.16 1.94 16 10 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 11 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 12 C 0.01 0.31 5.46 84.65 0.46 0.78 16 13 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 14 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.10 2.90 11.87 85.66 1.02 3.92 16 19 N -0.31 -8.58 11.54 -56.25 -0.65 -9.23 16 20 N -0.34 -7.64 3.43 -293.12 -1.01 -8.65 16 21 C 0.16 2.20 1.06 3.61 0.00 2.21 16 22 C -0.16 -1.60 8.49 71.98 0.61 -0.98 16 23 C -0.14 -1.73 7.98 71.98 0.57 -1.15 16 24 C -0.17 -1.57 7.24 71.98 0.52 -1.05 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.09 5.71 -2.39 -0.01 1.07 16 27 H 0.03 0.88 7.90 -2.39 -0.02 0.86 16 28 H 0.11 1.41 4.17 -2.39 -0.01 1.40 16 29 H 0.09 2.17 6.86 -2.39 -0.02 2.15 16 30 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.20 5.67 8.06 -2.91 -0.02 5.64 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.07 0.66 5.63 -2.39 -0.01 0.64 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.89 8.11 -2.38 -0.02 0.87 16 42 H 0.08 0.69 4.04 -2.39 -0.01 0.68 16 43 H 0.11 0.36 8.13 -2.39 -0.02 0.34 16 44 H 0.05 0.69 8.01 -2.39 -0.02 0.67 16 Total: -1.00 -72.89 355.60 6.83 -66.06 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.99 Total: 8.89 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.47 Total: -8.38 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.37 Total: -74.35 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.28 Total: -38.59 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.89 6.83 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919386823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.934 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds