Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28447 * 125.19984 * 2 1 4 4 C 1.30871 * 110.94681 * 180.26128 * 3 2 1 5 5 C 1.50704 * 126.05836 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46750 * 255.02365 * 5 4 3 7 7 C 1.52996 * 109.47078 * 15.02343 * 5 4 3 8 8 C 1.52999 * 109.46973 * 135.02702 * 5 4 3 9 9 C 1.39642 * 107.88075 * 0.02562 * 4 3 2 10 10 C 1.36655 * 125.19787 * 180.30222 * 2 1 3 11 11 C 1.47008 * 126.88848 * 359.71823 * 10 2 1 12 12 O 1.21551 * 119.99475 * 180.02562 * 11 10 2 13 13 O 1.34814 * 120.00344 * 359.97438 * 11 10 2 14 14 C 1.45195 * 117.00095 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47525 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47593 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99324 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00442 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47209 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46983 * 119.99954 * 21 19 17 24 24 H 1.48502 * 109.47446 * 240.00068 * 21 19 17 25 25 H 1.08996 * 109.47187 * 269.69890 * 1 2 3 26 26 H 1.08997 * 109.46902 * 29.69584 * 1 2 3 27 27 H 1.08997 * 109.47236 * 149.69618 * 1 2 3 28 28 H 1.09004 * 109.47324 * 60.00731 * 6 5 4 29 29 H 1.09006 * 109.47096 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47645 * 299.99961 * 6 5 4 31 31 H 1.09001 * 109.46860 * 60.00439 * 7 5 4 32 32 H 1.09006 * 109.47223 * 179.97438 * 7 5 4 33 33 H 1.08991 * 109.47515 * 299.99951 * 7 5 4 34 34 H 1.08996 * 109.47243 * 60.00149 * 8 5 4 35 35 H 1.09006 * 109.46990 * 180.02562 * 8 5 4 36 36 H 1.09003 * 109.46999 * 299.99472 * 8 5 4 37 37 H 1.07998 * 127.32106 * 180.02562 * 9 4 3 38 38 H 1.09000 * 109.47108 * 299.99406 * 14 13 11 39 39 H 1.09003 * 109.47416 * 59.99810 * 14 13 11 40 40 H 1.09000 * 109.46482 * 299.99712 * 15 14 13 41 41 H 1.09003 * 109.47095 * 59.99536 * 15 14 13 42 42 H 1.09007 * 109.46888 * 300.00112 * 16 15 14 43 43 H 1.08995 * 109.47405 * 59.99421 * 16 15 14 44 44 H 0.96999 * 120.00166 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4738 0.7274 -0.0056 5 6 4.6335 1.6898 -0.0079 6 6 5.2586 1.7317 -1.4037 7 6 4.1377 3.0867 0.3710 8 6 5.6815 1.2280 1.0066 9 6 3.5621 -0.6662 -0.0102 10 6 2.2527 -1.1167 -0.0059 11 6 1.8005 -2.5155 -0.0075 12 8 2.6153 -3.4175 -0.0125 13 8 0.4823 -2.7979 -0.0024 14 6 0.1087 -4.2009 -0.0037 15 6 -1.4165 -4.3227 0.0020 16 6 -1.8102 -5.8011 -0.0001 17 6 -3.3124 -5.9210 0.0049 18 1 -3.9250 -5.0315 0.0096 19 6 -3.9046 -7.1660 0.0035 20 7 -3.1586 -8.2491 -0.0017 21 14 -5.7667 -7.3146 0.0105 22 1 -6.3715 -5.9583 0.0163 23 1 -6.2093 -8.0481 -1.2026 24 1 -6.1998 -8.0554 1.2225 25 1 -0.3633 -0.0054 1.0276 26 1 -0.3633 0.8927 -0.5091 27 1 -0.3633 -0.8872 -0.5185 28 1 4.5120 2.0607 -2.1265 29 1 6.0972 2.4281 -1.4056 30 1 5.6118 0.7365 -1.6737 31 1 3.6924 3.0569 1.3654 32 1 4.9766 3.7828 0.3697 33 1 3.3911 3.4158 -0.3517 34 1 6.0348 0.2328 0.7366 35 1 6.5202 1.9243 1.0052 36 1 5.2362 1.1982 2.0010 37 1 4.4607 -1.2653 -0.0149 38 1 0.5077 -4.6823 -0.8965 39 1 0.5156 -4.6862 0.8834 40 1 -1.8160 -3.8412 0.8946 41 1 -1.8231 -3.8375 -0.8854 42 1 -1.4107 -6.2822 -0.8929 43 1 -1.4036 -6.2867 0.8870 44 1 -3.5753 -9.1250 -0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919498555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = -38.477856 kcal Electronic energy + Delta-G solvation = -23190.608996 eV Core-core repulsion = 19723.047120 eV Total energy + Delta-G solvation = -3467.561875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.79693 -40.04560 -37.29878 -36.59134 -34.09136 -32.86788 -31.86098 -31.14680 -27.72267 -27.49261 -27.17191 -26.97357 -24.34702 -22.71116 -22.35800 -20.73244 -20.34762 -19.20835 -17.55161 -16.97400 -16.79650 -16.19393 -15.93189 -15.61900 -14.94663 -14.51914 -14.37990 -14.19839 -14.05951 -13.94867 -13.37331 -13.00877 -12.67648 -12.45508 -12.39240 -12.22766 -12.19123 -12.00296 -11.89338 -11.58081 -11.30111 -11.21854 -11.04362 -10.89545 -10.73057 -10.63178 -10.51900 -10.49719 -9.82905 -9.59616 -9.33207 -9.21325 -9.06114 -8.44304 -6.08659 -4.12081 0.95600 2.24893 2.33543 2.64526 2.89203 3.26385 3.34107 3.37706 4.06351 4.38099 4.46631 4.52824 4.74738 4.77248 4.99847 5.04310 5.17707 5.27507 5.28973 5.36883 5.38262 5.46109 5.47817 5.50114 5.52716 5.55376 5.66312 5.67732 5.80226 5.87587 5.90573 6.06440 6.10527 6.25007 6.30353 6.43364 6.55613 6.69079 6.87931 7.53852 7.64017 7.66345 7.88951 7.89810 8.29441 8.94280 9.52648 11.02754 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039386 B = 0.002444 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.743899 B =11454.451079 C =11952.923487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.262 5.262 3 N -0.262 5.262 4 C 0.030 3.970 5 C 0.019 3.981 6 C -0.138 4.138 7 C -0.134 4.134 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.023 4.023 11 C 0.535 3.465 12 O -0.493 6.493 13 O -0.359 6.359 14 C 0.068 3.932 15 C -0.108 4.108 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.101 21.618 -0.111 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.052 5.052 3 N -0.097 5.097 4 C -0.125 4.125 5 C 0.017 3.983 6 C -0.196 4.196 7 C -0.192 4.192 8 C -0.197 4.197 9 C -0.175 4.175 10 C -0.149 4.149 11 C 0.378 3.622 12 O -0.379 6.379 13 O -0.275 6.275 14 C -0.004 4.004 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.181 0.819 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.374 21.966 -0.103 26.251 hybrid contribution -0.607 -1.191 0.028 1.337 sum 13.767 20.775 -0.075 24.923 Atomic orbital electron populations 1.22440 0.71968 1.06156 1.05208 1.45813 1.08017 1.01914 1.49434 1.73087 1.03670 1.13475 1.19426 1.21833 0.91654 0.92929 1.06126 1.18896 0.90072 0.92788 0.96574 1.21877 1.00465 1.02274 0.94977 1.21760 1.00929 0.94459 1.02019 1.21890 0.97749 1.01620 0.98489 1.21957 0.95312 0.94416 1.05839 1.20756 0.91679 0.86362 1.16062 1.19651 0.81820 0.87096 0.73683 1.90893 1.54937 1.46520 1.45521 1.86551 1.24149 1.33315 1.83534 1.23616 0.98693 0.75530 1.02578 1.21785 0.88830 1.02034 1.01937 1.19058 0.96711 0.87806 0.97785 1.21180 0.91420 0.92313 1.51091 0.92388 1.25033 0.98398 0.95899 0.95157 1.69969 1.35117 0.97709 1.50452 0.86493 0.85436 0.78160 0.77650 1.19684 1.20947 1.20942 0.89288 0.88525 0.86977 0.92469 0.91904 0.92185 0.92504 0.92453 0.92018 0.92053 0.91858 0.92362 0.81858 0.91159 0.91142 0.92080 0.92106 0.96167 0.96165 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.80 59.85 0.65 1.43 16 2 N -0.26 -3.28 3.75 -63.90 -0.24 -3.52 16 3 N -0.26 -3.26 11.23 33.63 0.38 -2.88 16 4 C 0.03 0.35 5.65 -82.48 -0.47 -0.12 16 5 C 0.02 0.16 0.96 -155.66 -0.15 0.01 16 6 C -0.14 -1.02 8.46 37.16 0.31 -0.71 16 7 C -0.13 -1.06 8.04 37.16 0.30 -0.76 16 8 C -0.14 -1.01 8.20 37.16 0.30 -0.70 16 9 C -0.15 -1.82 10.13 -38.97 -0.39 -2.21 16 10 C -0.02 -0.32 6.96 -82.07 -0.57 -0.90 16 11 C 0.54 8.48 7.93 34.28 0.27 8.75 16 12 O -0.49 -8.95 16.71 -19.30 -0.32 -9.27 16 13 O -0.36 -5.62 7.69 -40.80 -0.31 -5.93 16 14 C 0.07 1.19 5.48 37.16 0.20 1.40 16 15 C -0.11 -2.11 5.53 -26.73 -0.15 -2.26 16 16 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.11 1.13 6.16 -51.93 -0.32 0.81 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.06 0.43 7.60 -51.93 -0.39 0.04 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.16 1.80 7.79 -52.49 -0.41 1.39 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -31.51 369.01 -6.89 -38.40 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.43 Total: -4.08 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.24 Total: -8.77 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.87 Total: -32.08 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.64 Total: -15.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.51 -6.89 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919498555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.077 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds