Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28447 * 125.19984 * 2 1 4 4 C 1.30871 * 110.94681 * 180.26128 * 3 2 1 5 5 C 1.50704 * 126.05836 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46750 * 255.02365 * 5 4 3 7 7 C 1.52996 * 109.47078 * 15.02343 * 5 4 3 8 8 C 1.52999 * 109.46973 * 135.02702 * 5 4 3 9 9 C 1.39642 * 107.88075 * 0.02562 * 4 3 2 10 10 C 1.36655 * 125.19787 * 180.30222 * 2 1 3 11 11 C 1.47008 * 126.88848 * 359.71823 * 10 2 1 12 12 O 1.21551 * 119.99475 * 180.02562 * 11 10 2 13 13 O 1.34814 * 120.00344 * 359.97438 * 11 10 2 14 14 C 1.45195 * 117.00095 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47525 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47593 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99324 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00442 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47209 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46983 * 119.99954 * 21 19 17 24 24 H 1.48502 * 109.47446 * 240.00068 * 21 19 17 25 25 H 1.08996 * 109.47187 * 269.69890 * 1 2 3 26 26 H 1.08997 * 109.46902 * 29.69584 * 1 2 3 27 27 H 1.08997 * 109.47236 * 149.69618 * 1 2 3 28 28 H 1.09004 * 109.47324 * 60.00731 * 6 5 4 29 29 H 1.09006 * 109.47096 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47645 * 299.99961 * 6 5 4 31 31 H 1.09001 * 109.46860 * 60.00439 * 7 5 4 32 32 H 1.09006 * 109.47223 * 179.97438 * 7 5 4 33 33 H 1.08991 * 109.47515 * 299.99951 * 7 5 4 34 34 H 1.08996 * 109.47243 * 60.00149 * 8 5 4 35 35 H 1.09006 * 109.46990 * 180.02562 * 8 5 4 36 36 H 1.09003 * 109.46999 * 299.99472 * 8 5 4 37 37 H 1.07998 * 127.32106 * 180.02562 * 9 4 3 38 38 H 1.09000 * 109.47108 * 299.99406 * 14 13 11 39 39 H 1.09003 * 109.47416 * 59.99810 * 14 13 11 40 40 H 1.09000 * 109.46482 * 299.99712 * 15 14 13 41 41 H 1.09003 * 109.47095 * 59.99536 * 15 14 13 42 42 H 1.09007 * 109.46888 * 300.00112 * 16 15 14 43 43 H 1.08995 * 109.47405 * 59.99421 * 16 15 14 44 44 H 0.96999 * 120.00166 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4738 0.7274 -0.0056 5 6 4.6335 1.6898 -0.0079 6 6 5.2586 1.7317 -1.4037 7 6 4.1377 3.0867 0.3710 8 6 5.6815 1.2280 1.0066 9 6 3.5621 -0.6662 -0.0102 10 6 2.2527 -1.1167 -0.0059 11 6 1.8005 -2.5155 -0.0075 12 8 2.6153 -3.4175 -0.0125 13 8 0.4823 -2.7979 -0.0024 14 6 0.1087 -4.2009 -0.0037 15 6 -1.4165 -4.3227 0.0020 16 6 -1.8102 -5.8011 -0.0001 17 6 -3.3124 -5.9210 0.0049 18 1 -3.9250 -5.0315 0.0096 19 6 -3.9046 -7.1660 0.0035 20 7 -3.1586 -8.2491 -0.0017 21 14 -5.7667 -7.3146 0.0105 22 1 -6.3715 -5.9583 0.0163 23 1 -6.2093 -8.0481 -1.2026 24 1 -6.1998 -8.0554 1.2225 25 1 -0.3633 -0.0054 1.0276 26 1 -0.3633 0.8927 -0.5091 27 1 -0.3633 -0.8872 -0.5185 28 1 4.5120 2.0607 -2.1265 29 1 6.0972 2.4281 -1.4056 30 1 5.6118 0.7365 -1.6737 31 1 3.6924 3.0569 1.3654 32 1 4.9766 3.7828 0.3697 33 1 3.3911 3.4158 -0.3517 34 1 6.0348 0.2328 0.7366 35 1 6.5202 1.9243 1.0052 36 1 5.2362 1.1982 2.0010 37 1 4.4607 -1.2653 -0.0149 38 1 0.5077 -4.6823 -0.8965 39 1 0.5156 -4.6862 0.8834 40 1 -1.8160 -3.8412 0.8946 41 1 -1.8231 -3.8375 -0.8854 42 1 -1.4107 -6.2822 -0.8929 43 1 -1.4036 -6.2867 0.8870 44 1 -3.5753 -9.1250 -0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919498555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = -54.918116 kcal Electronic energy + Delta-G solvation = -23191.321899 eV Core-core repulsion = 19723.047120 eV Total energy + Delta-G solvation = -3468.274778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.75216 -41.35461 -38.01415 -37.94230 -35.96999 -33.86281 -33.57538 -32.25567 -29.14469 -28.21700 -28.05808 -27.77727 -25.87154 -24.26087 -23.20287 -22.23002 -21.58457 -20.27033 -18.69861 -18.41995 -18.00088 -17.90224 -17.04289 -16.62526 -16.49859 -15.72974 -15.61739 -15.07823 -14.99028 -14.90582 -14.48674 -14.16551 -13.96904 -13.85071 -13.67764 -13.39211 -12.98694 -12.93366 -12.87330 -12.58469 -12.50411 -12.48808 -12.32059 -12.15992 -11.99526 -11.94099 -11.84080 -11.52685 -11.46855 -11.43616 -11.24117 -10.58577 -10.36051 -9.94403 -8.22473 -6.33685 -0.15326 1.22573 1.39107 1.41267 1.41697 1.50195 1.55176 1.74784 2.40561 3.11958 3.18894 3.41507 3.72248 3.97596 4.00232 4.07764 4.13328 4.22104 4.30519 4.32322 4.38205 4.51111 4.59452 4.66044 4.78463 4.83158 4.85808 4.87809 4.96571 5.05193 5.08939 5.09374 5.13967 5.22126 5.26376 5.40893 5.48113 5.48600 5.48832 5.63308 5.68047 5.79914 6.17781 6.40773 6.82858 6.92267 7.36073 8.89904 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039386 B = 0.002444 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.743899 B =11454.451079 C =11952.923487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.263 5.263 3 N -0.267 5.267 4 C 0.030 3.970 5 C 0.016 3.984 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.047 4.047 11 C 0.540 3.460 12 O -0.521 6.521 13 O -0.348 6.348 14 C 0.078 3.922 15 C -0.092 4.092 16 C 0.024 3.976 17 C -0.539 4.539 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.173 0.827 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.071 0.929 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.978 23.759 -0.108 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.053 5.053 3 N -0.102 5.102 4 C -0.125 4.125 5 C 0.014 3.986 6 C -0.193 4.193 7 C -0.188 4.188 8 C -0.196 4.196 9 C -0.175 4.175 10 C -0.172 4.172 11 C 0.384 3.616 12 O -0.409 6.409 13 O -0.264 6.264 14 C 0.005 3.995 15 C -0.129 4.129 16 C -0.013 4.013 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.191 0.809 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.244 24.138 -0.100 28.028 hybrid contribution -0.505 -1.791 0.026 1.861 sum 13.739 22.348 -0.074 26.233 Atomic orbital electron populations 1.22655 0.70621 1.06900 1.06175 1.46082 1.08862 1.01371 1.48957 1.73108 1.04235 1.13416 1.19462 1.22358 0.92136 0.93061 1.04969 1.19081 0.89387 0.92428 0.97694 1.21868 1.00830 1.02763 0.93877 1.21734 1.01468 0.94484 1.01115 1.21892 0.97908 1.02238 0.97539 1.22219 0.95191 0.95107 1.04960 1.20650 0.92609 0.85699 1.18229 1.19921 0.81259 0.87744 0.72686 1.90878 1.55399 1.47524 1.47104 1.86542 1.24482 1.31828 1.83581 1.23278 0.97365 0.76603 1.02275 1.21461 0.90214 0.98349 1.02882 1.18945 0.95766 0.91064 0.95510 1.21642 0.92770 0.92771 1.50554 0.91490 1.26004 1.03700 0.95593 0.94724 1.70103 1.37387 0.98334 1.51604 0.85359 0.79106 0.78680 0.77654 1.18232 1.20549 1.20549 0.88170 0.86405 0.87614 0.93363 0.89768 0.92378 0.93387 0.90323 0.92924 0.92034 0.89789 0.93139 0.80917 0.91541 0.91564 0.91095 0.91066 0.98487 0.98502 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.80 127.77 1.38 2.71 16 2 N -0.26 -6.30 3.75 -356.09 -1.34 -7.63 16 3 N -0.27 -6.33 11.23 -47.51 -0.53 -6.87 16 4 C 0.03 0.65 5.65 43.04 0.24 0.89 16 5 C 0.02 0.24 0.96 -52.93 -0.05 0.19 16 6 C -0.14 -1.74 8.46 71.98 0.61 -1.13 16 7 C -0.13 -1.81 8.04 71.98 0.58 -1.23 16 8 C -0.14 -1.71 8.20 71.98 0.59 -1.12 16 9 C -0.15 -3.51 10.13 22.67 0.23 -3.28 16 10 C -0.05 -1.28 6.96 40.75 0.28 -0.99 16 11 C 0.54 17.06 7.93 70.12 0.56 17.61 16 12 O -0.52 -19.12 16.71 19.67 0.33 -18.79 16 13 O -0.35 -10.75 7.69 -57.26 -0.44 -11.19 16 14 C 0.08 2.73 5.48 71.98 0.39 3.12 16 15 C -0.09 -3.54 5.53 30.59 0.17 -3.37 16 16 C 0.02 1.24 4.97 29.85 0.15 1.39 16 17 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 20 N -0.93 -56.16 13.29 21.44 0.28 -55.88 16 21 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 2.02 6.16 -2.39 -0.01 2.01 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 34 H 0.06 0.76 7.60 -2.39 -0.02 0.74 16 35 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.17 3.69 7.79 -2.91 -0.02 3.66 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 42 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.48 369.01 7.12 -60.36 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.96 Total: 9.00 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.83 Total: -14.29 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.58 Total: -70.38 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.11 Total: -29.98 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.48 7.12 -60.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919498555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.445 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds